메뉴 건너뛰기




Volumn 9, Issue 2, 2013, Pages

Identification and Manipulation of the Molecular Determinants Influencing Poliovirus Recombination

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC RNA;

EID: 84874771467     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1003164     Document Type: Article
Times cited : (52)

References (61)
  • 1
    • 60049100931 scopus 로고    scopus 로고
    • Transmission networks and population turnover of echovirus 30
    • doi:10.1128/JVI.02109-08
    • McWilliam Leitch EC, Bendig J, Cabrerizo M, Cardosa J, Hyypiä T, et al. (2009) Transmission networks and population turnover of echovirus 30. J Virol 83: 2109-2118 doi:10.1128/JVI.02109-08.
    • (2009) J Virol , vol.83 , pp. 2109-2118
    • McWilliam Leitch, E.C.1    Bendig, J.2    Cabrerizo, M.3    Cardosa, J.4    Hyypiä, T.5
  • 2
    • 36749059426 scopus 로고    scopus 로고
    • Norovirus Recombination
    • doi:10.1099/vir.0.83321-0
    • Bull RA, Tanaka MM, White PA, (2007) Norovirus Recombination. J Gen Virol 88: 3347-3359 doi:10.1099/vir.0.83321-0.
    • (2007) J Gen Virol , vol.88 , pp. 3347-3359
    • Bull, R.A.1    Tanaka, M.M.2    White, P.A.3
  • 3
    • 79951492622 scopus 로고    scopus 로고
    • Evidence of a Recombinant Wild-Type Human Astrovirus Strain from a Kenyan Child with Gastroenteritis
    • doi:10.1128/JCM.01093-10
    • Wolfaardt M, Kiulia NM, Mwenda JM, Taylor MB, (2011) Evidence of a Recombinant Wild-Type Human Astrovirus Strain from a Kenyan Child with Gastroenteritis. J Clin Microbiol 49: 728-731 doi:10.1128/JCM.01093-10.
    • (2011) J Clin Microbiol , vol.49 , pp. 728-731
    • Wolfaardt, M.1    Kiulia, N.M.2    Mwenda, J.M.3    Taylor, M.B.4
  • 4
    • 0037316427 scopus 로고    scopus 로고
    • The Extent of Homologous Recombination in Members of the Genus Flavivirus
    • doi:10.1099/vir.0.18660-0
    • Twiddy SS, Holmes EC, (2003) The Extent of Homologous Recombination in Members of the Genus Flavivirus. J Gen Virol 84: 429-440 doi:10.1099/vir.0.18660-0.
    • (2003) J Gen Virol , vol.84 , pp. 429-440
    • Twiddy, S.S.1    Holmes, E.C.2
  • 5
    • 33751253784 scopus 로고    scopus 로고
    • Recombination Patterns in Aphthoviruses Mirror Those Found in Other Picornaviruses
    • doi:10.1128/JVI.01100-06
    • Heath L, Van Der Walt E, Varsani A, Martin DP, (2006) Recombination Patterns in Aphthoviruses Mirror Those Found in Other Picornaviruses. J Virol 80: 11827-11832 doi:10.1128/JVI.01100-06.
    • (2006) J Virol , vol.80 , pp. 11827-11832
    • Heath, L.1    van der Walt, E.2    Varsani, A.3    Martin, D.P.4
  • 6
    • 77956804573 scopus 로고    scopus 로고
    • Analysis of Genetic Diversity and Sites of Recombination in Human Rhinovirus Species C
    • doi:10.1128/JVI.00962-10
    • McIntyre CL, McWilliam Leitch EC, Savolainen-Kopra C, Hovi T, Simmonds P, (2010) Analysis of Genetic Diversity and Sites of Recombination in Human Rhinovirus Species C. J Virol 84: 10297-10310 doi:10.1128/JVI.00962-10.
    • (2010) J Virol , vol.84 , pp. 10297-10310
    • McIntyre, C.L.1    McWilliam Leitch, E.C.2    Savolainen-Kopra, C.3    Hovi, T.4    Simmonds, P.5
  • 7
    • 68149164713 scopus 로고    scopus 로고
    • Evidence of Recombination and Genetic Diversity in Human Rhinoviruses in Children with Acute Respiratory Infection
    • doi:10.1371/journal.pone.0006355
    • Huang T, Wang W, Bessaud M, Ren P, Sheng J, et al. (2009) Evidence of Recombination and Genetic Diversity in Human Rhinoviruses in Children with Acute Respiratory Infection. PLoS One 4 doi:10.1371/journal.pone.0006355.
    • (2009) PLoS One 4
    • Huang, T.1    Wang, W.2    Bessaud, M.3    Ren, P.4    Sheng, J.5
  • 8
    • 33645992762 scopus 로고    scopus 로고
    • Frequency and dynamics of recombination within different species of human enteroviruses
    • doi:10.1128/JVI.80.1.483-493.2006
    • Simmonds P, Welch J, (2006) Frequency and dynamics of recombination within different species of human enteroviruses. J Virol 80: 483-493 doi:10.1128/JVI.80.1.483-493.2006.
    • (2006) J Virol , vol.80 , pp. 483-493
    • Simmonds, P.1    Welch, J.2
  • 9
    • 1542287492 scopus 로고    scopus 로고
    • RNA Recombination Plays a Major Role in Genomic Change During Circulation of Coxsackie B Viruses
    • doi:10.1128/JVI.78.6.2948-2955.2004
    • Oberste MS, Peñaranda S, Pallansch MA, (2004) RNA Recombination Plays a Major Role in Genomic Change During Circulation of Coxsackie B Viruses. J Virol 78: 2948-2955 doi:10.1128/JVI.78.6.2948-2955.2004.
    • (2004) J Virol , vol.78 , pp. 2948-2955
    • Oberste, M.S.1    Peñaranda, S.2    Pallansch, M.A.3
  • 10
    • 80355146836 scopus 로고    scopus 로고
    • Molecular epidemiology, genome characterization, and recombination event of human parechovirus
    • doi:10.1016/j.virol.2011.09.021
    • Chieochansin T, Vichiwattana P, Korkong S, Theamboonlers A, Poovorawan Y, (2011) Molecular epidemiology, genome characterization, and recombination event of human parechovirus. Virology 421: 159-166 doi:10.1016/j.virol.2011.09.021.
    • (2011) Virology , vol.421 , pp. 159-166
    • Chieochansin, T.1    Vichiwattana, P.2    Korkong, S.3    Theamboonlers, A.4    Poovorawan, Y.5
  • 11
    • 34548233360 scopus 로고    scopus 로고
    • Enterovirus surveillance reveals proposed new serotypes and provides new insight into enterovirus 5′-untranslated region evolution
    • doi:10.1099/vir.0.82866-0
    • Smura T, Blomqvist S, Paananen A, Vuorinen T, Sobotová Z, et al. (2007) Enterovirus surveillance reveals proposed new serotypes and provides new insight into enterovirus 5′-untranslated region evolution. J Gen Virol 88: 2520-2526 doi:10.1099/vir.0.82866-0.
    • (2007) J Gen Virol , vol.88 , pp. 2520-2526
    • Smura, T.1    Blomqvist, S.2    Paananen, A.3    Vuorinen, T.4    Sobotová, Z.5
  • 12
    • 77956028248 scopus 로고    scopus 로고
    • Human Enterovirus 109: A Novel Interspecies Recombinant Enterovirus Isolated from a Case of Acute Pediatric Respiratory Illness in Nicaragua
    • doi:10.1128/JVI.00698-10
    • Yozwiak NL, Skewes-Cox P, Gordon A, Saborio S, Kuan G, et al. (2010) Human Enterovirus 109: A Novel Interspecies Recombinant Enterovirus Isolated from a Case of Acute Pediatric Respiratory Illness in Nicaragua. J Virol 84: 9047-9058 doi:10.1128/JVI.00698-10.
    • (2010) J Virol , vol.84 , pp. 9047-9058
    • Yozwiak, N.L.1    Skewes-Cox, P.2    Gordon, A.3    Saborio, S.4    Kuan, G.5
  • 13
    • 0034973281 scopus 로고    scopus 로고
    • Genomic Features of Intertypic Recombinant Sabin Poliovirus Strains Excreted by Primary Vaccinees
    • doi:10.1128/JVI.75.13.5740-5751.2001
    • Cuervo NS, Guillot S, Romanenkova N, Combiescu M, Aubert-Combiescu A, et al. (2001) Genomic Features of Intertypic Recombinant Sabin Poliovirus Strains Excreted by Primary Vaccinees. J Virol 75: 5740-5751 doi:10.1128/JVI.75.13.5740-5751.2001.
    • (2001) J Virol , vol.75 , pp. 5740-5751
    • Cuervo, N.S.1    Guillot, S.2    Romanenkova, N.3    Combiescu, M.4    Aubert-Combiescu, A.5
  • 14
    • 0033858149 scopus 로고    scopus 로고
    • Natural Genetic Exchanges Between Vaccine and Wild Poliovirus Strains in Humans
    • doi:10.1128/JVI.74.18.8434-8443.2000
    • Guillot S, Caro V, Cuervo N, Korotkova E, Combiescu M, et al. (2000) Natural Genetic Exchanges Between Vaccine and Wild Poliovirus Strains in Humans. J Virol 74: 8434-8443 doi:10.1128/JVI.74.18.8434-8443.2000.
    • (2000) J Virol , vol.74 , pp. 8434-8443
    • Guillot, S.1    Caro, V.2    Cuervo, N.3    Korotkova, E.4    Combiescu, M.5
  • 15
    • 34249021717 scopus 로고    scopus 로고
    • Isolation of recombinant type 2 vaccine-derived poliovirus (VDPV) from a Nigerian child
    • doi:10.1016/j.virusres.2007.03.009
    • Adu F, Iber J, Bukbuk D, Gumede N, Yang S-J, et al. (2007) Isolation of recombinant type 2 vaccine-derived poliovirus (VDPV) from a Nigerian child. Virus Research 127: 17-25 doi:10.1016/j.virusres.2007.03.009.
    • (2007) Virus Research , vol.127 , pp. 17-25
    • Adu, F.1    Iber, J.2    Bukbuk, D.3    Gumede, N.4    Yang, S.-J.5
  • 17
    • 0038784829 scopus 로고    scopus 로고
    • Circulation of Endemic Type 2 Vaccine-Derived Poliovirus in Egypt from 1983 to 1993
    • doi:10.1128/JVI.77.15.8366-8377.2003
    • Yang C-F, Naguib T, Yang S-J, Nasr E, Jorba J, et al. (2003) Circulation of Endemic Type 2 Vaccine-Derived Poliovirus in Egypt from 1983 to 1993. J Virol 77: 8366-8377 doi:10.1128/JVI.77.15.8366-8377.2003.
    • (2003) J Virol , vol.77 , pp. 8366-8377
    • Yang, C.-F.1    Naguib, T.2    Yang, S.-J.3    Nasr, E.4    Jorba, J.5
  • 18
    • 0141677704 scopus 로고    scopus 로고
    • Serial Recombination During Circulation of Type 1 Wild-Vaccine Recombinant Polioviruses in China
    • doi:10.1128/JVI.77.20.10994-11005.2003
    • Liu H-M, Zheng D-P, Zhang L-B, Oberste MS, Kew OM, et al. (2003) Serial Recombination During Circulation of Type 1 Wild-Vaccine Recombinant Polioviruses in China. J Virol 77: 10994-11005 doi:10.1128/JVI.77.20.10994-11005.2003.
    • (2003) J Virol , vol.77 , pp. 10994-11005
    • Liu, H.-M.1    Zheng, D.-P.2    Zhang, L.-B.3    Oberste, M.S.4    Kew, O.M.5
  • 19
    • 2942687256 scopus 로고    scopus 로고
    • Live flavivirus vaccines: reasons for caution
    • doi:10.1016/S0140-6736(04)16459-3
    • Seligman SJ, Gould EA, (2004) Live flavivirus vaccines: reasons for caution. Lancet 363: 2073-2075 doi:10.1016/S0140-6736(04)16459-3.
    • (2004) Lancet , vol.363 , pp. 2073-2075
    • Seligman, S.J.1    Gould, E.A.2
  • 20
    • 73849176898 scopus 로고
    • Genetic Recombination with Newcastle Disease Virus, Polioviruses, and Influenza
    • doi:10.1101/SQB.1962.027.001.028
    • Hirst GK, (1962) Genetic Recombination with Newcastle Disease Virus, Polioviruses, and Influenza. Cold Spring Harbor Symposia on Quantitative Biology 27: 303-309 doi:10.1101/SQB.1962.027.001.028.
    • (1962) Cold Spring Harbor Symposia on Quantitative Biology , vol.27 , pp. 303-309
    • Hirst, G.K.1
  • 21
    • 0019169573 scopus 로고
    • Biochemical evidence for intertypic genetic recombination of polioviruses
    • Romanova LI, Tolskaya EA, Kolesnikova MS, Agol VI, (1980) Biochemical evidence for intertypic genetic recombination of polioviruses. FEBS Lett 118: 109-112.
    • (1980) FEBS Lett , vol.118 , pp. 109-112
    • Romanova, L.I.1    Tolskaya, E.A.2    Kolesnikova, M.S.3    Agol, V.I.4
  • 22
    • 0023017765 scopus 로고
    • The mechanism of RNA recombination in poliovirus
    • Kirkegaard K, Baltimore D, (1986) The mechanism of RNA recombination in poliovirus. Cell 47: 433-443.
    • (1986) Cell , vol.47 , pp. 433-443
    • Kirkegaard, K.1    Baltimore, D.2
  • 23
    • 0026623162 scopus 로고
    • Poliovirus RNA recombination: mechanistic studies in the absence of selection
    • Jarvis TC, Kirkegaard K, (1992) Poliovirus RNA recombination: mechanistic studies in the absence of selection. EMBO J 11: 3135-3145.
    • (1992) EMBO J , vol.11 , pp. 3135-3145
    • Jarvis, T.C.1    Kirkegaard, K.2
  • 24
    • 0030924255 scopus 로고    scopus 로고
    • Poliovirus RNA recombination in cell-free extracts
    • Tang RS, Barton DJ, Flanegan JB, Kirkegaard K, (1997) Poliovirus RNA recombination in cell-free extracts. RNA 3: 624-633.
    • (1997) RNA , vol.3 , pp. 624-633
    • Tang, R.S.1    Barton, D.J.2    Flanegan, J.B.3    Kirkegaard, K.4
  • 25
    • 0031443645 scopus 로고    scopus 로고
    • Genetic Recombination of Poliovirus in a Cell-Free System
    • Duggal R, Cuconati A, Gromeier M, Wimmer E, (1997) Genetic Recombination of Poliovirus in a Cell-Free System. PNAS 94: 13786-13791.
    • (1997) PNAS , vol.94 , pp. 13786-13791
    • Duggal, R.1    Cuconati, A.2    Gromeier, M.3    Wimmer, E.4
  • 26
    • 0033602708 scopus 로고    scopus 로고
    • Genetic Recombination of Poliovirusin Vitroandin Vivo: Temperature-Dependent Alteration of Crossover Sites
    • doi:10.1006/viro.1999.9703
    • Duggal R, Wimmer E, (1999) Genetic Recombination of Poliovirusin Vitroandin Vivo: Temperature-Dependent Alteration of Crossover Sites. Virology 258: 30-41 doi:10.1006/viro.1999.9703.
    • (1999) Virology , vol.258 , pp. 30-41
    • Duggal, R.1    Wimmer, E.2
  • 27
    • 0014317346 scopus 로고
    • A genetic map of poliovirus temperature-sensitive mutants
    • Cooper PD, (1968) A genetic map of poliovirus temperature-sensitive mutants. Virology 35: 584-596.
    • (1968) Virology , vol.35 , pp. 584-596
    • Cooper, P.D.1
  • 28
    • 84983719085 scopus 로고    scopus 로고
    • Intratypic recombination among lineages of type 1 vaccine-derived poliovirus emerging during chronic infection of an immunodeficient patient
    • doi:10.1128/JVI.79.20.12623-12634.2005
    • Yang C-F, Chen H-Y, Jorba J, Sun H-C, Yang S-J, et al. (2005) Intratypic recombination among lineages of type 1 vaccine-derived poliovirus emerging during chronic infection of an immunodeficient patient. J Virol 79: 12623-12634 doi:10.1128/JVI.79.20.12623-12634.2005.
    • (2005) J Virol , vol.79 , pp. 12623-12634
    • Yang, C.-F.1    Chen, H.-Y.2    Jorba, J.3    Sun, H.-C.4    Yang, S.-J.5
  • 29
    • 0024267181 scopus 로고
    • Preferred Sites of Recombination in Poliovirus RNA: An Analysis of 40 Intertypic Cross-Over Sequences
    • doi:10.1093/nar/16.24.11705
    • King AMQ, (1988) Preferred Sites of Recombination in Poliovirus RNA: An Analysis of 40 Intertypic Cross-Over Sequences. Nucl Acids Res 16: 11705-11723 doi:10.1093/nar/16.24.11705.
    • (1988) Nucl Acids Res , vol.16 , pp. 11705-11723
    • King, A.M.Q.1
  • 30
    • 0346688632 scopus 로고    scopus 로고
    • Evidence for Frequent Recombination within Species Human Enterovirus B Based on Complete Genomic Sequences of All Thirty-Seven Serotypes
    • doi:10.1128/JVI.78.2.855-867.2004
    • Oberste MS, Maher K, Pallansch MA, (2004) Evidence for Frequent Recombination within Species Human Enterovirus B Based on Complete Genomic Sequences of All Thirty-Seven Serotypes. J Virol 78: 855-867 doi:10.1128/JVI.78.2.855-867.2004.
    • (2004) J Virol , vol.78 , pp. 855-867
    • Oberste, M.S.1    Maher, K.2    Pallansch, M.A.3
  • 31
    • 77957316181 scopus 로고    scopus 로고
    • Correlation between recombination junctions and RNA secondary structure elements in poliovirus Sabin strains
    • doi:10.1007/s11262-010-0512-5
    • Dedepsidis E, Kyriakopoulou Z, Pliaka V, Markoulatos P, (2010) Correlation between recombination junctions and RNA secondary structure elements in poliovirus Sabin strains. Virus Genes 41: 181-191 doi:10.1007/s11262-010-0512-5.
    • (2010) Virus Genes , vol.41 , pp. 181-191
    • Dedepsidis, E.1    Kyriakopoulou, Z.2    Pliaka, V.3    Markoulatos, P.4
  • 32
    • 0023634933 scopus 로고
    • Studies on the recombination between RNA genomes of poliovirus: The primary structure and nonrandom distribution of crossover regions in the genomes of intertypic poliovirus recombinants
    • doi:10.1016/0042-6822(87)90170-X
    • Tolskaya EA, Romanova LI, Blinov VM, Viktorova EG, Sinyakov AN, et al. (1987) Studies on the recombination between RNA genomes of poliovirus: The primary structure and nonrandom distribution of crossover regions in the genomes of intertypic poliovirus recombinants. Virology 161: 54-61 doi:10.1016/0042-6822(87)90170-X.
    • (1987) Virology , vol.161 , pp. 54-61
    • Tolskaya, E.A.1    Romanova, L.I.2    Blinov, V.M.3    Viktorova, E.G.4    Sinyakov, A.N.5
  • 33
    • 53749090392 scopus 로고    scopus 로고
    • Identification of a Conserved RNA Replication Element (cre) Within the 3Dpol-Coding Sequence of Hepatoviruses
    • doi:10.1128/JVI.00787-08
    • Yang Y, Yi M, Evans DJ, Simmonds P, Lemon SM, (2008) Identification of a Conserved RNA Replication Element (cre) Within the 3Dpol-Coding Sequence of Hepatoviruses. J Virol 82: 10118-10128 doi:10.1128/JVI.00787-08.
    • (2008) J Virol , vol.82 , pp. 10118-10128
    • Yang, Y.1    Yi, M.2    Evans, D.J.3    Simmonds, P.4    Lemon, S.M.5
  • 34
    • 34249828988 scopus 로고    scopus 로고
    • A Phylogenetically Conserved RNA Structure in the Poliovirus Open Reading Frame Inhibits the Antiviral Endoribonuclease RNase L
    • doi:10.1128/JVI.01857-06
    • Han J-Q, Townsend HL, Jha BK, Paranjape JM, Silverman RH, et al. (2007) A Phylogenetically Conserved RNA Structure in the Poliovirus Open Reading Frame Inhibits the Antiviral Endoribonuclease RNase L. J Virol 81: 5561-5572 doi:10.1128/JVI.01857-06.
    • (2007) J Virol , vol.81 , pp. 5561-5572
    • Han, J.-Q.1    Townsend, H.L.2    Jha, B.K.3    Paranjape, J.M.4    Silverman, R.H.5
  • 35
    • 33748923860 scopus 로고    scopus 로고
    • Reduction of the Rate of Poliovirus Protein Synthesis through Large-Scale Codon Deoptimization Causes Attenuation of Viral Virulence by Lowering Specific Infectivity
    • doi:10.1128/JVI.00738-06
    • Mueller S, Papamichail D, Coleman JR, Skiena S, Wimmer E, (2006) Reduction of the Rate of Poliovirus Protein Synthesis through Large-Scale Codon Deoptimization Causes Attenuation of Viral Virulence by Lowering Specific Infectivity. J Virol 80: 9687-9696 doi:10.1128/JVI.00738-06.
    • (2006) J Virol , vol.80 , pp. 9687-9696
    • Mueller, S.1    Papamichail, D.2    Coleman, J.R.3    Skiena, S.4    Wimmer, E.5
  • 36
    • 70349272204 scopus 로고    scopus 로고
    • Genetic Inactivation of Poliovirus Infectivity by Increasing the Frequencies of CpG and UpA Dinucleotides within and across Synonymous Capsid Region Codons
    • doi:10.1128/JVI.00508-09
    • Burns CC, Campagnoli R, Shaw J, Vincent A, Jorba J, et al. (2009) Genetic Inactivation of Poliovirus Infectivity by Increasing the Frequencies of CpG and UpA Dinucleotides within and across Synonymous Capsid Region Codons. J Virol 83: 9957-9969 doi:10.1128/JVI.00508-09.
    • (2009) J Virol , vol.83 , pp. 9957-9969
    • Burns, C.C.1    Campagnoli, R.2    Shaw, J.3    Vincent, A.4    Jorba, J.5
  • 37
    • 79958172988 scopus 로고    scopus 로고
    • Temporal Analysis of the Honey Bee Microbiome Reveals Four Novel Viruses and Seasonal Prevalence of Known Viruses, Nosema, and Crithidia
    • doi:10.1371/journal.pone.0020656
    • Runckel C, Flenniken ML, Engel JC, Ruby JG, Ganem D, et al. (2011) Temporal Analysis of the Honey Bee Microbiome Reveals Four Novel Viruses and Seasonal Prevalence of Known Viruses, Nosema, and Crithidia. PLoS ONE 6: e20656 doi:10.1371/journal.pone.0020656.
    • (2011) PLoS ONE , vol.6
    • Runckel, C.1    Flenniken, M.L.2    Engel, J.C.3    Ruby, J.G.4    Ganem, D.5
  • 38
    • 0025112945 scopus 로고
    • Template switching by reverse transcriptase during DNA synthesis
    • Luo GX, Taylor J, (1990) Template switching by reverse transcriptase during DNA synthesis. J Virol 64: 4321-4328.
    • (1990) J Virol , vol.64 , pp. 4321-4328
    • Luo, G.X.1    Taylor, J.2
  • 39
    • 0029059015 scopus 로고
    • Template-switching during DNA synthesis by Thermus aquaticus DNA polymerase I
    • Odelberg SJ, Weiss RB, Hata A, White R, (1995) Template-switching during DNA synthesis by Thermus aquaticus DNA polymerase I. Nucleic Acids Res 23: 2049-2057.
    • (1995) Nucleic Acids Res , vol.23 , pp. 2049-2057
    • Odelberg, S.J.1    Weiss, R.B.2    Hata, A.3    White, R.4
  • 40
    • 33745379412 scopus 로고    scopus 로고
    • BEAMing: single-molecule PCR on microparticles in water-in-oil emulsions
    • doi:10.1038/nmeth898
    • Diehl F, Li M, He Y, Kinzler KW, Vogelstein B, et al. (2006) BEAMing: single-molecule PCR on microparticles in water-in-oil emulsions. Nat Methods 3: 551-559 doi:10.1038/nmeth898.
    • (2006) Nat Methods , vol.3 , pp. 551-559
    • Diehl, F.1    Li, M.2    He, Y.3    Kinzler, K.W.4    Vogelstein, B.5
  • 41
    • 41949124934 scopus 로고    scopus 로고
    • Deciphering Human Immunodeficiency Virus Type 1 Transmission and Early Envelope Diversification by Single-Genome Amplification and Sequencing
    • doi:10.1128/JVI.02660-07
    • Salazar-Gonzalez JF, Bailes E, Pham KT, Salazar MG, Guffey MB, et al. (2008) Deciphering Human Immunodeficiency Virus Type 1 Transmission and Early Envelope Diversification by Single-Genome Amplification and Sequencing. J Virol 82: 3952-3970 doi:10.1128/JVI.02660-07.
    • (2008) J Virol , vol.82 , pp. 3952-3970
    • Salazar-Gonzalez, J.F.1    Bailes, E.2    Pham, K.T.3    Salazar, M.G.4    Guffey, M.B.5
  • 42
    • 79551712478 scopus 로고    scopus 로고
    • Beyond the Consensus: Dissecting Within-Host Viral Population Diversity of Foot-and-Mouth Disease Virus by Using Next-Generation Genome Sequencing
    • doi:10.1128/JVI.01396-10
    • Wright CF, Morelli MJ, Thébaud G, Knowles NJ, Herzyk P, et al. (2011) Beyond the Consensus: Dissecting Within-Host Viral Population Diversity of Foot-and-Mouth Disease Virus by Using Next-Generation Genome Sequencing. J Virol 85: 2266-2275 doi:10.1128/JVI.01396-10.
    • (2011) J Virol , vol.85 , pp. 2266-2275
    • Wright, C.F.1    Morelli, M.J.2    Thébaud, G.3    Knowles, N.J.4    Herzyk, P.5
  • 43
    • 78649401437 scopus 로고    scopus 로고
    • RNA structures facilitate recombination-mediated gene swapping in HIV-1
    • doi:10.1128/JVI.01302-10
    • Simon-Loriere E, Martin DP, Weeks KM, Negroni M, (2010) RNA structures facilitate recombination-mediated gene swapping in HIV-1. J Virol 84: 12675-12682 doi:10.1128/JVI.01302-10.
    • (2010) J Virol , vol.84 , pp. 12675-12682
    • Simon-Loriere, E.1    Martin, D.P.2    Weeks, K.M.3    Negroni, M.4
  • 45
    • 0033755326 scopus 로고    scopus 로고
    • Genetic and Biochemical Studies of Poliovirus cis-Acting Replication Element cre in Relation to VPg Uridylylation
    • Rieder E, Paul AV, Kim DW, van Boom JH, Wimmer E, (2000) Genetic and Biochemical Studies of Poliovirus cis-Acting Replication Element cre in Relation to VPg Uridylylation. J Virol 74: 10371-10380.
    • (2000) J Virol , vol.74 , pp. 10371-10380
    • Rieder, E.1    Paul, A.V.2    Kim, D.W.3    van Boom, J.H.4    Wimmer, E.5
  • 46
    • 84934438960 scopus 로고    scopus 로고
    • UNAFold: Software for Nucleic Acid Folding and Hybridization
    • In: Keith JM, editor Totowa: Humana Press
    • Markham NR, Zuker M (2008) UNAFold: Software for Nucleic Acid Folding and Hybridization. In: Keith JM, editor. Bioinformatics: Structure, Function and Applications. Volume 453. Totowa: Humana Press. pp. 3-31.
    • (2008) Bioinformatics: Structure, Function and Applications , vol.453 , pp. 3-31
    • Markham, N.R.1    Zuker, M.2
  • 47
    • 0027186549 scopus 로고
    • The Lempel-Ziv complexity and local structure analysis of genomes
    • Gusev VD, Kulichkov VA, Chupakhina OM, (1993) The Lempel-Ziv complexity and local structure analysis of genomes. BioSystems 30: 183-200.
    • (1993) BioSystems , vol.30 , pp. 183-200
    • Gusev, V.D.1    Kulichkov, V.A.2    Chupakhina, O.M.3
  • 48
    • 1342303735 scopus 로고    scopus 로고
    • Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray
    • Bozdech Z, Zhu J, Joachimiak MP, Cohen FE, Pulliam B, et al. (2003) Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray. Genome Biol 4: R9.
    • (2003) Genome Biol , vol.4
    • Bozdech, Z.1    Zhu, J.2    Joachimiak, M.P.3    Cohen, F.E.4    Pulliam, B.5
  • 49
    • 37748998907 scopus 로고    scopus 로고
    • fREDUCE: detection of degenerate regulatory elements using correlation with expression
    • doi:10.1186/1471-2105-8-399
    • Wu RZ, Chaivorapol C, Zheng J, Li H, Liang S, (2007) fREDUCE: detection of degenerate regulatory elements using correlation with expression. BMC Bioinformatics 8: 399 doi:10.1186/1471-2105-8-399.
    • (2007) BMC Bioinformatics , vol.8 , pp. 399
    • Wu, R.Z.1    Chaivorapol, C.2    Zheng, J.3    Li, H.4    Liang, S.5
  • 50
    • 0035228215 scopus 로고    scopus 로고
    • BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes
    • Liu X, Brutlag DL, Liu JS, (2001) BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes. Pac Symp Biocomput pp. 127-138.
    • (2001) Pac Symp Biocomput , pp. 127-138
    • Liu, X.1    Brutlag, D.L.2    Liu, J.S.3
  • 51
    • 77951080101 scopus 로고    scopus 로고
    • High-Performance Single Cell Genetic Analysis Using Microfluidic Emulsion Generator Arrays
    • doi:10.1021/ac902683t
    • Zeng Y, Novak R, Shuga J, Smith MT, Mathies RA, (2010) High-Performance Single Cell Genetic Analysis Using Microfluidic Emulsion Generator Arrays. Anal Chem 82: 3183-3190 doi:10.1021/ac902683t.
    • (2010) Anal Chem , vol.82 , pp. 3183-3190
    • Zeng, Y.1    Novak, R.2    Shuga, J.3    Smith, M.T.4    Mathies, R.A.5
  • 53
    • 33751214219 scopus 로고    scopus 로고
    • Comparison of avian and human influenza A viruses reveals a mutational bias on the viral genomes
    • doi:10.1128/JVI.01414-06
    • Rabadan R, Levine AJ, Robins H, (2006) Comparison of avian and human influenza A viruses reveals a mutational bias on the viral genomes. J Virol 80: 11887-11891 doi:10.1128/JVI.01414-06.
    • (2006) J Virol , vol.80 , pp. 11887-11891
    • Rabadan, R.1    Levine, A.J.2    Robins, H.3
  • 54
    • 66149093121 scopus 로고    scopus 로고
    • Different Evolutionary Trajectories of European Avian-Like and Classical Swine H1N1 Influenza A Viruses
    • doi:10.1128/JVI.02565-08
    • Dunham EJ, Dugan VG, Kaser EK, Perkins SE, Brown IH, et al. (2009) Different Evolutionary Trajectories of European Avian-Like and Classical Swine H1N1 Influenza A Viruses. J Virol 83: 5485-5494 doi:10.1128/JVI.02565-08.
    • (2009) J Virol , vol.83 , pp. 5485-5494
    • Dunham, E.J.1    Dugan, V.G.2    Kaser, E.K.3    Perkins, S.E.4    Brown, I.H.5
  • 55
    • 0028221062 scopus 로고
    • Why is CpG suppressed in the genomes of virtually all small eukaryotic viruses but not in those of large eukaryotic viruses?
    • Karlin, Doerfler W, Cardon LR, (1994) Why is CpG suppressed in the genomes of virtually all small eukaryotic viruses but not in those of large eukaryotic viruses? Journal of Virology 68: 2889-2897.
    • (1994) Journal of Virology , vol.68 , pp. 2889-2897
    • Karlin, D.W.1    Cardon, L.R.2
  • 56
    • 0030726485 scopus 로고    scopus 로고
    • Dinucleotide and Stop Codon Frequencies in Single-Stranded RNA Viruses
    • Rima BK, McFerran NV, (1997) Dinucleotide and Stop Codon Frequencies in Single-Stranded RNA Viruses. J Gen Virol 78: 2859-2870.
    • (1997) J Gen Virol , vol.78 , pp. 2859-2870
    • Rima, B.K.1    McFerran, N.V.2
  • 57
    • 13544250809 scopus 로고    scopus 로고
    • CpG RNA: Identification of Novel Single-Stranded RNA That Stimulates Human CD14+CD11c+ Monocytes
    • Sugiyama T, Gursel M, Takeshita F, Coban C, Conover J, et al. (2005) CpG RNA: Identification of Novel Single-Stranded RNA That Stimulates Human CD14+CD11c+ Monocytes. J Immunol 174: 2273-2279.
    • (2005) J Immunol , vol.174 , pp. 2273-2279
    • Sugiyama, T.1    Gursel, M.2    Takeshita, F.3    Coban, C.4    Conover, J.5
  • 58
    • 0346104825 scopus 로고    scopus 로고
    • Mammalian Mutation Pressure, Synonymous Codon Choice, and mRNA Degradation
    • doi:10.1007/s00239-003-2519-1
    • Duan J, Antezana M, (2003) Mammalian Mutation Pressure, Synonymous Codon Choice, and mRNA Degradation. Journal of Molecular Evolution 57: 694-701 doi:10.1007/s00239-003-2519-1.
    • (2003) Journal of Molecular Evolution , vol.57 , pp. 694-701
    • Duan, J.1    Antezana, M.2
  • 59
    • 0011051225 scopus 로고
    • Evolution of the Genome and the Genetic Code: Selection at the Dinucleotide Level by Methylation and Polyribonucleotide Cleavage
    • Beutler E, Gelbart T, Han JH, Koziol JA, Beutler B, (1989) Evolution of the Genome and the Genetic Code: Selection at the Dinucleotide Level by Methylation and Polyribonucleotide Cleavage. PNAS 86: 192-196.
    • (1989) PNAS , vol.86 , pp. 192-196
    • Beutler, E.1    Gelbart, T.2    Han, J.H.3    Koziol, J.A.4    Beutler, B.5
  • 60
    • 79952853435 scopus 로고    scopus 로고
    • Exploring the Fitness Landscape of an RNA Virus by Using a Universal Barcode Microarray
    • doi:10.1128/JVI.02217-10
    • Lauring AS, Andino R, (2011) Exploring the Fitness Landscape of an RNA Virus by Using a Universal Barcode Microarray. J Virol 85: 3780-3791 doi:10.1128/JVI.02217-10.
    • (2011) J Virol , vol.85 , pp. 3780-3791
    • Lauring, A.S.1    Andino, R.2
  • 61
    • 0033919960 scopus 로고    scopus 로고
    • Poliovirus Requires a Precise 5′ End for Efficient Positive-Strand RNA Synthesis
    • doi:10.1128/JVI.74.14.6394-6400.2000
    • Herold J, Andino R, (2000) Poliovirus Requires a Precise 5′ End for Efficient Positive-Strand RNA Synthesis. J Virol 74: 6394-6400 doi:10.1128/JVI.74.14.6394-6400.2000.
    • (2000) J Virol , vol.74 , pp. 6394-6400
    • Herold, J.1    Andino, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.