Molecular epidemiology, genome characterization, and recombination event of human parechovirus

Virology

Volumn 421, Issue 2, 2011, Pages 159-166

  Chieochansin, Thaweesak ^a   Vichiwattana, Preeyaporn ^a   Korkong, Sumeth ^a   Theamboonlers, Apiradee ^a   Poovorawan, Yong ^a  

^a CHULALONGKORN UNIVERSITY   (Thailand)

Author keywords

Genotype; HPeV; Human parechovirus; Recombination

Indexed keywords

ARTICLE; CHILD; CONTROLLED STUDY; FECES ANALYSIS; FEMALE; GASTROINTESTINAL TRACT; GENOTYPE; HUMAN; INFANT; MAJOR CLINICAL STUDY; MALE; MOLECULAR EPIDEMIOLOGY; NONHUMAN; PARECHOVIRUS; PARECHOVIRUS 1B; PARECHOVIRUS INFECTION; PRIORITY JOURNAL; RESPIRATORY SYSTEM; RNA VIRUS INFECTION; THAILAND; THROAT CULTURE; VIRUS CHARACTERIZATION; VIRUS DETECTION; VIRUS GENOME; VIRUS RECOMBINATION;

CHILD; CHILD, PRESCHOOL; EVOLUTION, MOLECULAR; FECES; FEMALE; GASTROINTESTINAL TRACT; GENOME, VIRAL; GENOTYPE; HUMANS; INFANT; MALE; MIDDLE AGED; MOLECULAR EPIDEMIOLOGY; NASOPHARYNX; NUCLEOPROTEINS; PARECHOVIRUS; PICORNAVIRIDAE INFECTIONS; RECOMBINATION, GENETIC; RESPIRATORY SYSTEM; THAILAND;

HUMAN PARECHOVIRUS; PICORNAVIRIDAE;

EID: 80355146836     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2011.09.021     Document Type: Article

References (38)

1. Abed Y., Boivin G. Human parechovirus types 1, 2 and 3 infections in Canada. Emerg. Infect. Dis. 2006, 12:969-975.
2. Benschop K.S., Schinkel J., Luken M.E., van den Broek P.J., Beersma M.F., Menelik N., van Eijk H.W., Zaaijer H.L., VandenBroucke-Grauls C.M., Beld M.G., Wolthers K.C. Fourth human parechovirus serotype. Emerg. Infect. Dis. 2006, 12:1572-1575.
3. Benschop K.S., Schinkel J., Minnaar R.P., Pajkrt D., Spanjerberg L., Kraakman H.C., Berkhout B., Zaaijer H.L., Beld M.G., Wolthers K.C. Human parechovirus infections in Dutch children and the association between serotype and disease severity. Clin. Infect. Dis. 2006, 42:204-210.
4. Benschop K., Thomas X., Serpenti C., Molenkamp R., Wolthers K. High prevalence of human Parechovirus (HPeV) genotypes in the Amsterdam region and identification of specific HPeV variants by direct genotyping of stool samples. J. Clin. Microbiol. 2008, 46:3965-3970.
5. Benschop K.S., Williams C.H., Wolthers K.C., Stanway G., Simmonds P. Widespread recombination within human parechoviruses: analysis of temporal dynamics and constraints. J. Gen. Virol. 2008, 89:1030-1035.
6. Benschop K.S., de Vries M., Minnaar R.P., Stanway G., van der Hoek L., Wolthers K.C., Simmonds P. Comprehensive full-length sequence analyses of human parechoviruses: diversity and recombination. J. Gen. Virol. 2010, 91:145-154.
7. Boivin G., Abed Y., Boucher F.D. Human parechovirus 3 and neonatal infections. Emerg. Infect. Dis. 2005, 11:103-105.
8. Calvert J., Chieochansin T., Benschop K.S., McWilliam, Leitch E.C., Drexler J.F., Grywna K., da Costa, Ribeiro H., Drosten C., Harvala H., Poovorawan Y., Wolthers K.C., Simmonds P. Recombination dynamics of human parechoviruses: investigation of type-specific differences in frequency and epidemiological correlates. J. Gen. Virol. 2010, 91:1229-1238.
9. Drexler J.F., Grywna K., Stöcker A., Almeida P.S., Medrado-Ribeiro T.C., Eschbach-Bludau M., Petersen N., da Costa-Ribeiro-Jr H., Drosten C. Novel human parechovirus from Brazil. Emerg. Infect. Dis. 2009, 15:310-313.
10. Drexler, J.F., Grywna, K., Lukashev, A., Stöcker, A., Almeida, P.S., Wieseler, J., Ribeiro, T.C., Petersen, N., Ribeiro, Had, C. Jr., Belalov, I., Kümmerer, B.M., Drosten, C., 2011. Full genome sequence analysis of parechoviruses from Brazil reveals geographical patterns in the evolution of non-structural genes and intratypic recombination in the capsid region. J. Gen. Virol. 92, 564-571.
11. Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
12. Faria N.R., de Vries M., van Hemert F.J., Benschop K., van der Hoek L. Rooting human parechovirus evolution in time. BMC Evol. Biol. 2009, 9:164.
13. Figueroa J.P., Ashley D., King D., Hull B. An outbreak of acute flaccid paralysis in Jamaica associated with echovirus type 22. J. Med. Virol. 1989, 29:315-319.
14. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 1999, 41:95-98.
15. Harvala H., Simmonds P. Human parechoviruses: biology, epidemiology and clinical significance. J. Clin. Virol. 2009, 45:1-9.
16. Harvala, H., Robertson, I., McWilliam, Leitch, E.C., Benschop, K., Wolthers, K.C., Templeton, K., Simmonds, P., 2008. Epidemiology and clinical associations of human parechovirus respiratory infections. J. Clin. Microbiol. 46; 3446-3453.
17. Harvala, H., Robertson, I., Chieochansin, T., McWilliam, Leitch, E.C., Templeton, K., Simmonds, P., 2009. Specific association of human parechovirus type 3 with sepsis and fever in young infants, as identified by direct typing of cerebrospinal fluid samples. J. Infect. Dis. 199, 1753-1760.
18. Harvala H., Wolthers K.C., Simmonds P. Parechoviruses in children: understanding a new infection. Curr. Opin. Infect. Dis. 2010, 23:224-230.
19. Ito M., Yamashita T., Tsuzuki H., Takeda N., Sakae K. Isolation and identification of a novel human parechovirus. J. Gen. Virol. 2004, 85:391-398.
20. Ito M., Yamashita T., Tsuzuki H., Kabashima Y., Hasegawa A., Nagaya S., Kawaguchi M., Kobayashi S., Fujiura A., Sakae K., Minagawa H. Detection of human parechoviruses from clinical stool samples in Aichi, Japan. J. Clin. Microbiol. 2010, 48:2683-2688.
21. Khetsuriani N., Lamonte-Fowlkes A., Oberst S., Pallansch M.A. Enterovirus surveillance United States. MMWR Surveill. Summ. 2006, 55:1-20.
22. Li L., Victoria J., Kapoor A., Naeem A., Shaukat S., Sharif S., Alam M.M., Angez M., Zaidi S.Z., Delwart E. Genomic characterization of novel human parechovirus type. Emerg. Infect. Dis. 2009, 15:288-291.
23. Oberste M.S., Maher K., Pallansch M.A. Complete sequence of echovirus 23 and its relationship to echovirus 22 and other human enteroviruses. Virus Res. 1998, 56:217-223.
24. Pham N.T., Trinh Q.D., Khamrin P., Maneekarn N., Shimizu H., Okitsu S., Mizuguchi M., Ushijima H. Diversity of human parechoviruses isolated from stool samples collected from Thai children with acute gastroenteritis. J. Clin. Microbiol. 2010, 48:115-119.
25. Stanway G., Hyypia T. Parechoviruses. J. Virol. 1999, 73:5249-5254.
26. Stanway G., Kalkkinen N., Roivainen M., Ghazi F., Khan M., Smyth M., Meurman O., Hyypiä T. Molecular and biological characteristics of echovirus 22, a representative of a new picornavirus group. J. Virol. 1994, 68:8232-8238.
27. Suwannakarn K., Payungporn S., Chieochansin T., Samransamruajkit R., Amonsin A., Songserm T., Chaisingh A., Chamnanpood P., Chutinimitkul S., Theamboonlers A., Poovorawan Y. Typing (A/B) and subtyping (H1/H3/H5) of influenza A viruses by multiplex real-time RT-PCR assays. J. Virol. Methods 2008, 152:25-31.
28. Tapia G., Cinek O., Witsø E., Kulich M., Rasmussen T., Grinde B., Rønningen K.S. Longitudinal observation of parechovirus in stool samples from Norwegian infants. J. Med. Virol. 2008, 80:1835-1842.
29. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 2007, 24:1596-1599.
30. Tauriainen S., Martiskainen M., Oikarinen S., Lönnrot M., Viskari H., Ilonen J., Simell O., Knip M., Hyöty H. Human parechovirus 1 infections in young children - no association with type 1 diabetes. J. Med. Virol. 2007, 79:457-462.
31. Theamboonlers A., Veravigrom M., Yambangyang O., Trairatvorakul P., Chongsrisawat V., Poovorawan Y. The incidence of rotavirus a isolates of G genotype in Thailand in 2002-2004. Acta Virol. 2002, 49:111-115.
32. Verboon-Maciolek M.A., Krediet T.G., Gerards L.J., Fleer A., van Loon T.M. Clinical and epidemiologic characteristics of viral infections in a neonatal intensive care unit during a 12-year period. Pediatr. Infect. Dis. J. 2005, 24:901-904.
33. Watanabe K., Oie M., Higuchi M., Nishikawa M., Fujii M. Isolation and characterization of novel human parechovirus from clinical samples. Emerg Infect Dis. 2007, 13:889-895.
34. Wigand R., Sabin A.B. Properties of ECHO types 22, 23 and 24 viruses. Arch. Gesamte Virusforsch. 1961, 11:224-247.
35. Williams C.H., Panayiotou M., Girling G.D., Peard C.I., Oikarinen S., Hyöty H., Stanway G. Evolution and conservation in human parechovirus genomes. J. Gen. Virol. 2009, 90:1702-1712.
36. Zhang D.L., Jin Y., Li D.D., Cheng W.X., Xu Z.Q., Yu J.M., Jin M., Yang S.H., Zhang Q., Cui S.X., Liu N., Duan Z.J. Prevalence of human parechovirus in Chinese children hospitalized for acute gastroenteritis. Clin. Microbiol. Infect. 2010, 17:1563-1569.
37. Zhong H., Lin Y., Sun J., Su L., Cao L., Yang Y., Xu J. Prevalence and genotypes of human parechovirus in stool samples from hospitalized children in Shanghai, China, 2008 and 2009. J. Med. Virol. 2011, 83:1428-1434.
38. Zoll J., Galama J.M., van Kuppeveld F.J. Identification of potential recombination breakpoints in human parechoviruses. J. Virol. 2009, 83:3379-3383.