-
1
-
-
0025890073
-
Dissimilatory Fe(III) and Mn(IV) reduction
-
Lovley DR. 1991. Dissimilatory Fe(III) and Mn(IV) reduction. Microbiol. Rev. 55:259 -287.
-
(1991)
Microbiol. Rev
, vol.55
, pp. 259-287
-
-
Lovley, D.R.1
-
2
-
-
0024191542
-
Novel mode of microbial energy metabolism: organic carbon oxidation coupled to dissimilatory reduction of iron or manganese
-
Lovley DR, Phillips EJ. 1988. Novel mode of microbial energy metabolism: organic carbon oxidation coupled to dissimilatory reduction of iron or manganese. Appl. Environ. Microbiol. 54:1472-1480.
-
(1988)
Appl. Environ. Microbiol
, vol.54
, pp. 1472-1480
-
-
Lovley, D.R.1
Phillips, E.J.2
-
3
-
-
0025018122
-
Respiration-linked proton translocation coupled to anaerobic reduction of manganese(IV) and iron(III) in Shewanella putrefaciens MR-1
-
Myers CR, Nealson KH. 1990. Respiration-linked proton translocation coupled to anaerobic reduction of manganese(IV) and iron(III) in Shewanella putrefaciens MR-1. J. Bacteriol. 172:6232- 6238.
-
(1990)
J. Bacteriol
, vol.172
, pp. 6232-6238
-
-
Myers, C.R.1
Nealson, K.H.2
-
4
-
-
84857082945
-
Dissimilatory reduction of extracellular electron acceptors in anaerobic respiration
-
Richter K, Schicklberger M, Gescher J. 2012. Dissimilatory reduction of extracellular electron acceptors in anaerobic respiration. Appl. Environ. Microbiol. 78:913-921.
-
(2012)
Appl. Environ. Microbiol
, vol.78
, pp. 913-921
-
-
Richter, K.1
Schicklberger, M.2
Gescher, J.3
-
6
-
-
0024219883
-
Bacterial manganese reduction and growth with manganese oxide as the sole electron-acceptor
-
Myers CR, Nealson KH. 1988. Bacterial manganese reduction and growth with manganese oxide as the sole electron-acceptor. Science 240: 1319-1321.
-
(1988)
Science
, vol.240
, pp. 1319-1321
-
-
Myers, C.R.1
Nealson, K.H.2
-
7
-
-
0026532734
-
Microbial reduction of manganese and iron: new approaches to carbon cycling
-
Nealson KH, Myers CR. 1992. Microbial reduction of manganese and iron: new approaches to carbon cycling. Appl. Environ. Microbiol. 58: 439-443.
-
(1992)
Appl. Environ. Microbiol
, vol.58
, pp. 439-443
-
-
Nealson, K.H.1
Myers, C.R.2
-
8
-
-
0033933788
-
Microbial manganese and sulfate reduction in Black Sea shelf sediments
-
Thamdrup B, Rossello-Mora R, Amann R. 2000. Microbial manganese and sulfate reduction in Black Sea shelf sediments. Appl. Environ. Microbiol. 66:2888 -2897.
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 2888-2897
-
-
Thamdrup, B.1
Rossello-Mora, R.2
Amann, R.3
-
9
-
-
0032947007
-
Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov
-
Venkateswaran K, Moser DP, Dollhopf ME, Lies DP, Saffarini DA, MacGregor BJ, Ringelberg DB, White DC, Nishijima M, Sano H, Burghardt J, Stackebrandt E, Nealson KH. 1999. Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov. Int. J. Syst. Bacteriol. 49:705-724.
-
(1999)
Int. J. Syst. Bacteriol
, vol.49
, pp. 705-724
-
-
Venkateswaran, K.1
Moser, D.P.2
Dollhopf, M.E.3
Lies, D.P.4
Saffarini, D.A.5
MacGregor, B.J.6
Ringelberg, D.B.7
White, D.C.8
Nishijima, M.9
Sano, H.10
Burghardt, J.11
Stackebrandt, E.12
Nealson, K.H.13
-
10
-
-
0003487643
-
-
2nd ed. Wiley-VCH, Weinheim, Germany
-
Cornell RM, Schwertmann U. 2003. The iron oxides: structure, properties, reactions, occurrences, and uses, 2nd ed. Wiley-VCH, Weinheim, Germany.
-
(2003)
The iron oxides: structure, properties, reactions, occurrences, and uses
-
-
Cornell, R.M.1
Schwertmann, U.2
-
11
-
-
55149120128
-
Kinetics of reduction of Fe(III) complexes by outer membrane cytochromes MtrC and OmcA of Shewanella oneidensis MR-1
-
Wang Z, Liu C, Wang X, Marshall MJ, Zachara JM, Rosso KM, Dupuis M, Fredrickson JK, Heald S, Shi L. 2008. Kinetics of reduction of Fe(III) complexes by outer membrane cytochromes MtrC and OmcA of Shewanella oneidensis MR-1. Appl. Environ. Microbiol. 74:6746-6755.
-
(2008)
Appl. Environ. Microbiol
, vol.74
, pp. 6746-6755
-
-
Wang, Z.1
Liu, C.2
Wang, X.3
Marshall, M.J.4
Zachara, J.M.5
Rosso, K.M.6
Dupuis, M.7
Fredrickson, J.K.8
Heald, S.9
Shi, L.10
-
12
-
-
47549087897
-
Towards environmental systems biology of Shewanella
-
Fredrickson JK, Romine MF, Beliaev AS, Auchtung JM, Driscoll ME, Gardner TS, Nealson KH, Osterman AL, Pinchuk G, Reed JL, Rodionov DA, Rodrigues JL, Saffarini DA, Serres MH, Spormann AM, Zhulin IB, Tiedje JM. 2008. Towards environmental systems biology of Shewanella. Nat. Rev. Microbiol. 6:592- 603.
-
(2008)
Nat. Rev. Microbiol
, vol.6
, pp. 592-603
-
-
Fredrickson, J.K.1
Romine, M.F.2
Beliaev, A.S.3
Auchtung, J.M.4
Driscoll, M.E.5
Gardner, T.S.6
Nealson, K.H.7
Osterman, A.L.8
Pinchuk, G.9
Reed, J.L.10
Rodionov, D.A.11
Rodrigues, J.L.12
Saffarini, D.A.13
Serres, M.H.14
Spormann, A.M.15
Zhulin, I.B.16
Tiedje, J.M.17
-
13
-
-
44349123893
-
Electron transfer at the microbemineral interface: a grand challenge in biogeochemistry
-
Fredrickson JK, Zachara JM. 2008. Electron transfer at the microbemineral interface: a grand challenge in biogeochemistry. Geobiology 6:245-253.
-
(2008)
Geobiology
, vol.6
, pp. 245-253
-
-
Fredrickson, J.K.1
Zachara, J.M.2
-
15
-
-
0034015380
-
Bacterial respiration: a flexible process for a changing environment
-
Richardson DJ. 2000. Bacterial respiration: a flexible process for a changing environment. Microbiology 146:551-571.
-
(2000)
Microbiology
, vol.146
, pp. 551-571
-
-
Richardson, D.J.1
-
16
-
-
84863520275
-
Molecular underpinnings of Fe(III) oxide reduction by Shewanella oneidensis MR-1
-
Shi L, Rosso KM, Clarke TA, Richardson DJ, Zachara JM, Fredrickson JK. 2012. Molecular underpinnings of Fe(III) oxide reduction by Shewanella oneidensis MR-1. Front. Microbiol. 3:50.
-
(2012)
Front. Microbiol
, vol.3
, pp. 50
-
-
Shi, L.1
Rosso, K.M.2
Clarke, T.A.3
Richardson, D.J.4
Zachara, J.M.5
Fredrickson, J.K.6
-
17
-
-
79959370190
-
Structure of a bacterial cell surface decaheme electron conduit
-
Clarke TA, Edwards MJ, Gates AJ, Hall A, White GF, Bradley J, Reardon CL, Shi L, Beliaev AS, Marshall MJ, Wang Z, Watmough NJ, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ. 2011. Structure of a bacterial cell surface decaheme electron conduit. Proc. Natl. Acad. Sci. U. S. A. 108:9384 -9389.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A
, vol.108
, pp. 9384-9389
-
-
Clarke, T.A.1
Edwards, M.J.2
Gates, A.J.3
Hall, A.4
White, G.F.5
Bradley, J.6
Reardon, C.L.7
Shi, L.8
Beliaev, A.S.9
Marshall, M.J.10
Wang, Z.11
Watmough, N.J.12
Fredrickson, J.K.13
Zachara, J.M.14
Butt, J.N.15
Richardson, D.J.16
-
18
-
-
73349134931
-
Characterization of an electron conduit between bacteria and the extracellular environment
-
Hartshorne RS, Reardon CL, Ross D, Nuester J, Clarke TA, Gates AJ, Mills PC, Fredrickson JK, Zachara JM, Shi L, Beliaev AS, Marshall MJ, Tien M, Brantley S, Butt JN, Richardson DJ. 2009. Characterization of an electron conduit between bacteria and the extracellular environment. Proc. Natl. Acad. Sci. U. S. A. 106:22169 -22174.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A
, vol.106
, pp. 22169-22174
-
-
Hartshorne, R.S.1
Reardon, C.L.2
Ross, D.3
Nuester, J.4
Clarke, T.A.5
Gates, A.J.6
Mills, P.C.7
Fredrickson, J.K.8
Zachara, J.M.9
Shi, L.10
Beliaev, A.S.11
Marshall, M.J.12
Tien, M.13
Brantley, S.14
Butt, J.N.15
Richardson, D.J.16
-
19
-
-
0036841160
-
MtrB is required for proper incorporation of the cytochromes OmcA and OmcB into the outer membrane of Shewanella putrefaciens MR-1
-
Myers CR, Myers JM. 2002. MtrB is required for proper incorporation of the cytochromes OmcA and OmcB into the outer membrane of Shewanella putrefaciens MR-1. Appl. Environ. Microbiol. 68:5585-5594.
-
(2002)
Appl. Environ. Microbiol
, vol.68
, pp. 5585-5594
-
-
Myers, C.R.1
Myers, J.M.2
-
20
-
-
34648827433
-
Characterization of protein-protein interactions involved in iron reduction by Shewanella oneidensis MR-1
-
Ross DE, Ruebush SS, Brantley SL, Hartshorne RS, Clarke TA, Richardson DJ, Tien M. 2007. Characterization of protein-protein interactions involved in iron reduction by Shewanella oneidensis MR-1. Appl. Environ. Microbiol. 73:5797-5808.
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 5797-5808
-
-
Ross, D.E.1
Ruebush, S.S.2
Brantley, S.L.3
Hartshorne, R.S.4
Clarke, T.A.5
Richardson, D.J.6
Tien, M.7
-
21
-
-
33745449038
-
Isolation of a high-affinity functional protein complex between OmcA and MtrC: two outer membrane decaheme c-type cytochromes of Shewanella oneidensis MR-1
-
Shi L, Chen B, Wang Z, Elias DA, Mayer MU, Gorby YA, Ni S, Lower BH, Kennedy DW, Wunschel DS, Mottaz HM, Marshall MJ, Hill EA, Beliaev AS, Zachara JM, Fredrickson JK, Squier TC. 2006. Isolation of a high-affinity functional protein complex between OmcA and MtrC: two outer membrane decaheme c-type cytochromes of Shewanella oneidensis MR-1. J. Bacteriol. 188:4705- 4714.
-
(2006)
J. Bacteriol
, vol.188
, pp. 4705-4714
-
-
Shi, L.1
Chen, B.2
Wang, Z.3
Elias, D.A.4
Mayer, M.U.5
Gorby, Y.A.6
Ni, S.7
Lower, B.H.8
Kennedy, D.W.9
Wunschel, D.S.10
Mottaz, H.M.11
Marshall, M.J.12
Hill, E.A.13
Beliaev, A.S.14
Zachara, J.M.15
Fredrickson, J.K.16
Squier, T.C.17
-
22
-
-
0031754775
-
Shewanella putrefaciens mtrB encodes an outer membrane protein required for Fe(III) and Mn(IV) reduction
-
Beliaev AS, Saffarini DA. 1998. Shewanella putrefaciens mtrB encodes an outer membrane protein required for Fe(III) and Mn(IV) reduction. J. Bacteriol. 180:6292- 6297.
-
(1998)
J. Bacteriol
, vol.180
, pp. 6292-6297
-
-
Beliaev, A.S.1
Saffarini, D.A.2
-
23
-
-
0035131413
-
MtrC, an outer membrane decahaem c cytochrome required for metal reduction in Shewanella putrefaciens MR-1
-
Beliaev AS, Saffarini DA, McLaughlin JL, Hunnicutt D. 2001. MtrC, an outer membrane decahaem c cytochrome required for metal reduction in Shewanella putrefaciens MR-1. Mol. Microbiol. 39:722-730.
-
(2001)
Mol. Microbiol
, vol.39
, pp. 722-730
-
-
Beliaev, A.S.1
Saffarini, D.A.2
McLaughlin, J.L.3
Hunnicutt, D.4
-
24
-
-
35949000517
-
Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants
-
Bretschger O, Obraztsova A, Sturm CA, Chang IS, Gorby YA, Reed SB, Culley DE, Reardon CL, Barua S, Romine MF, Zhou J, Beliaev AS, Bouhenni R, Saffarini D, Mansfeld F, Kim BH, Fredrickson JK, Nealson KH. 2007. Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants. Appl. Environ. Microbiol. 73: 7003-7012.
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 7003-7012
-
-
Bretschger, O.1
Obraztsova, A.2
Sturm, C.A.3
Chang, I.S.4
Gorby, Y.A.5
Reed, S.B.6
Culley, D.E.7
Reardon, C.L.8
Barua, S.9
Romine, M.F.10
Zhou, J.11
Beliaev, A.S.12
Bouhenni, R.13
Saffarini, D.14
Mansfeld, F.15
Kim, B.H.16
Fredrickson, J.K.17
Nealson, K.H.18
-
25
-
-
77955382673
-
Modularity of the Mtr respiratory pathway of Shewanella oneidensis strain MR-1
-
Coursolle D, Gralnick JA. 2010. Modularity of the Mtr respiratory pathway of Shewanella oneidensis strain MR-1. Mol. Microbiol. 77:995-1008.
-
(2010)
Mol. Microbiol.
, vol.77
, pp. 995-1008
-
-
Coursolle, D.1
Gralnick, J.A.2
-
26
-
-
84870165628
-
Reconstruction of extracellular respiratory pathways for iron(III) reduction in Shewanella oneidensis strain MR-1
-
Coursolle D, Gralnick JA. 2012. Reconstruction of extracellular respiratory pathways for iron(III) reduction in Shewanella oneidensis strain MR-1. Front. Microbiol. 3:56.
-
(2012)
Front. Microbiol
, vol.3
, pp. 56
-
-
Coursolle, D.1
Gralnick, J.A.2
-
27
-
-
73249114332
-
Periplasmic electron transfer via the c-type cytochromes MtrA and FccA of Shewanella oneidensis MR-1
-
Schuetz B, Schicklberger M, Kuermann J, Spormann AM, Gescher J. 2009. Periplasmic electron transfer via the c-type cytochromes MtrA and FccA of Shewanella oneidensis MR-1. Appl. Environ. Microbiol. 75:7789- 7796.
-
(2009)
Appl. Environ. Microbiol
, vol.75
, pp. 7789-7796
-
-
Schuetz, B.1
Schicklberger, M.2
Kuermann, J.3
Spormann, A.M.4
Gescher, J.5
-
28
-
-
34250639301
-
Respiration of metal (hydr)oxides by Shewanella and Geobacter: a key role for multihaem c-type cytochromes
-
Shi L, Squier TC, Zachara JM, Fredrickson JK. 2007. Respiration of metal (hydr)oxides by Shewanella and Geobacter: a key role for multihaem c-type cytochromes. Mol. Microbiol. 65:12-20.
-
(2007)
Mol. Microbiol
, vol.65
, pp. 12-20
-
-
Shi, L.1
Squier, T.C.2
Zachara, J.M.3
Fredrickson, J.K.4
-
29
-
-
77951130441
-
Involvement and specificity of Shewanella oneidensis outer membrane cytochromes in the reduction of soluble and solid-phase terminal electron acceptors
-
Bücking C, Popp F, Kerzenmacher S, Gescher J. 2010. Involvement and specificity of Shewanella oneidensis outer membrane cytochromes in the reduction of soluble and solid-phase terminal electron acceptors. FEMS Microbiol. Lett. 306:144 -151.
-
(2010)
FEMS Microbiol. Lett
, vol.306
, pp. 144-151
-
-
Bücking, C.1
Popp, F.2
Kerzenmacher, S.3
Gescher, J.4
-
30
-
-
79953210779
-
Involvement of the Shewanella oneidensis decaheme cytochrome MtrA in the periplasmic stability of the beta-barrel protein MtrB
-
Schicklberger M, Bucking C, Schuetz B, Heide H, Gescher J. 2011. Involvement of the Shewanella oneidensis decaheme cytochrome MtrA in the periplasmic stability of the beta-barrel protein MtrB. Appl. Environ. Microbiol. 77:1520 -1523.
-
(2011)
Appl. Environ. Microbiol
, vol.77
, pp. 1520-1523
-
-
Schicklberger, M.1
Bucking, C.2
Schuetz, B.3
Heide, H.4
Gescher, J.5
-
31
-
-
33645224039
-
Extracellular respiration of dimethyl sulfoxide by Shewanella oneidensis strain MR-1
-
Gralnick JA, Vali H, Lies DP, Newman DK. 2006. Extracellular respiration of dimethyl sulfoxide by Shewanella oneidensis strain MR-1. Proc. Natl. Acad. Sci. U. S. A. 103:4669-4674.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A
, vol.103
, pp. 4669-4674
-
-
Gralnick, J.A.1
Vali, H.2
Lies, D.P.3
Newman, D.K.4
-
32
-
-
0030861452
-
Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements
-
Lutz R, Bujard H. 1997. Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements. Nucleic Acids Res. 25:1203-1210.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 1203-1210
-
-
Lutz, R.1
Bujard, H.2
-
33
-
-
33847670407
-
Ferrozine-a new spectrophotometric reagent for iron
-
Stookey LL. 1970. Ferrozine-a new spectrophotometric reagent for iron. Anal. Chem. 42:779 -781.
-
(1970)
Anal. Chem
, vol.42
, pp. 779-781
-
-
Stookey, L.L.1
-
34
-
-
0041344634
-
Characterization of the Shewanella oneidensis MR-1 decaheme cytochrome MtrA: expression in Escherichia coli confers the ability to reduce soluble Fe(III) chelates
-
Pitts KE, Dobbin PS, Reyes-Ramirez F, Thomson AJ, Richardson DJ, Seward HE. 2003. Characterization of the Shewanella oneidensis MR-1 decaheme cytochrome MtrA: expression in Escherichia coli confers the ability to reduce soluble Fe(III) chelates. J. Biol. Chem. 278:27758 -27765.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 27758-27765
-
-
Pitts, K.E.1
Dobbin, P.S.2
Reyes-Ramirez, F.3
Thomson, A.J.4
Richardson, D.J.5
Seward, H.E.6
-
35
-
-
0028847646
-
Characterization and environmental regulation of outer membrane proteins in Xenorhabdus nematophilus
-
Leisman GB, Waukau J, Forst SA. 1995. Characterization and environmental regulation of outer membrane proteins in Xenorhabdus nematophilus. Appl. Environ. Microbiol. 61:200 -204.
-
(1995)
Appl. Environ. Microbiol
, vol.61
, pp. 200-204
-
-
Leisman, G.B.1
Waukau, J.2
Forst, S.A.3
-
36
-
-
60349083955
-
In vivo assembly and single-molecule characterization of the transcription machinery from Shewanella oneidensis MR-1
-
Gassman NR, Ho SO, Korlann Y, Chiang J, Wu Y, Perry LJ, Kim Y, Weiss S. 2008. In vivo assembly and single-molecule characterization of the transcription machinery from Shewanella oneidensis MR-1. Protein Expr. Purif. 65:66 -76.
-
(2008)
Protein Expr. Purif
, vol.65
, pp. 66-76
-
-
Gassman, N.R.1
Ho, S.O.2
Korlann, Y.3
Chiang, J.4
Wu, Y.5
Perry, L.J.6
Kim, Y.7
Weiss, S.8
-
37
-
-
33746045692
-
Saccharomyces cerevisiae-based molecular tool kit for manipulation of genes from gram-negative bacteria
-
Shanks RM, Caiazza NC, Hinsa SM, Toutain CM, O'Toole GA. 2006. Saccharomyces cerevisiae-based molecular tool kit for manipulation of genes from gram-negative bacteria. Appl. Environ. Microbiol. 72:5027- 5036.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 5027-5036
-
-
Shanks, R.M.1
Caiazza, N.C.2
Hinsa, S.M.3
Toutain, C.M.4
O'Toole, G.A.5
-
38
-
-
0027982037
-
The Salmonella typhimurium invasion genes invF and invG encode homologues of the AraC and PulD family of proteins
-
Kaniga K, Bossio JC, Galan JE. 1994. The Salmonella typhimurium invasion genes invF and invG encode homologues of the AraC and PulD family of proteins. Mol. Microbiol. 13:555-568.
-
(1994)
Mol. Microbiol
, vol.13
, pp. 555-568
-
-
Kaniga, K.1
Bossio, J.C.2
Galan, J.E.3
-
39
-
-
67349270900
-
Enzymatic assembly of DNA molecules up to several hundred kilobases
-
Gibson DG, Young L, Chuang RY, Venter JC, Hutchison CA, 3rd, Smith HO. 2009. Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat. Methods 6:343-345.
-
(2009)
Nat. Methods
, vol.6
, pp. 343-345
-
-
Gibson, D.G.1
Young, L.2
Chuang, R.Y.3
Venter, J.C.4
Hutchison 3rd, C.A.5
Smith, H.O.6
-
40
-
-
67749133487
-
MotX and MotY are required for flagellar rotation in Shewanella oneidensis MR-1
-
Koerdt A, Paulick A, Mock M, Jost K, Thormann KM. 2009. MotX and MotY are required for flagellar rotation in Shewanella oneidensis MR-1. J. Bacteriol. 191:5085-5093.
-
(2009)
J. Bacteriol
, vol.191
, pp. 5085-5093
-
-
Koerdt, A.1
Paulick, A.2
Mock, M.3
Jost, K.4
Thormann, K.M.5
-
42
-
-
0009482260
-
Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications
-
Towbin H, Staehelin T, Gordon J. 1979. Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc. Natl. Acad. Sci. U. S. A. 76:4350-4354.
-
(1979)
Proc. Natl. Acad. Sci. U. S. A
, vol.76
, pp. 4350-4354
-
-
Towbin, H.1
Staehelin, T.2
Gordon, J.3
-
43
-
-
85010439719
-
Procedure for isolation of deoxyribonucleic acid from micro-organisms
-
Marmur J. 1961. Procedure for isolation of deoxyribonucleic acid from micro-organisms. J. Mol. Biol. 3:208 -218.
-
(1961)
J. Mol. Biol
, vol.3
, pp. 208-218
-
-
Marmur, J.1
-
44
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754 -1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
45
-
-
77949512406
-
Tablet-next generation sequence assembly visualization
-
Milne I, Bayer M, Cardle L, Shaw P, Stephen G, Wright F, Marshall D. 2010. Tablet-next generation sequence assembly visualization. Bioinformatics 26:401- 402.
-
(2010)
Bioinformatics
, vol.26
, pp. 401-402
-
-
Milne, I.1
Bayer, M.2
Cardle, L.3
Shaw, P.4
Stephen, G.5
Wright, F.6
Marshall, D.7
-
46
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli UK. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
-
47
-
-
79955546577
-
Partial functional replacement ofCymAby SirCD in Shewanella oneidensis MR-1
-
Cordova CD, Schicklberger MFR, Yu Y, Spormann AM. 2011. Partial functional replacement ofCymAby SirCD in Shewanella oneidensis MR-1. J. Bacteriol. 193:2312-2321.
-
(2011)
J. Bacteriol
, vol.193
, pp. 2312-2321
-
-
Cordova, C.D.1
Schicklberger, M.F.R.2
Yu, Y.3
Spormann, A.M.4
-
48
-
-
48149083295
-
Electrochemical interrogations of the Mtr cytochromes from Shewanella: opening a potential window
-
Firer-Sherwood M, Pulcu GS, Elliott SJ. 2008. Electrochemical interrogations of the Mtr cytochromes from Shewanella: opening a potential window. J. Biol. Inorg. Chem. 13:849-854.
-
(2008)
J. Biol. Inorg. Chem
, vol.13
, pp. 849-854
-
-
Firer-Sherwood, M.1
Pulcu, G.S.2
Elliott, S.J.3
-
49
-
-
41749120309
-
Dissimilatory iron reduction in Escherichia coli: identification of CymA of Shewanella oneidensis and NapC of E. coli as ferric reductases
-
Gescher JS, Cordova CD, Spormann AM. 2008. Dissimilatory iron reduction in Escherichia coli: identification of CymA of Shewanella oneidensis and NapC of E. coli as ferric reductases. Mol. Microbiol. 68:706 -719.
-
(2008)
Mol. Microbiol
, vol.68
, pp. 706-719
-
-
Gescher, J.S.1
Cordova, C.D.2
Spormann, A.M.3
-
50
-
-
77953637460
-
Purification and characterization of OmcZ, an outer-surface, octaheme c-type cytochrome essential for optimal current production by Geobacter sulfurreducens
-
Inoue K, Qian X, Morgado L, Kim BC, Mester T, Izallalen M, Salgueiro CA, Lovley DR. 2010. Purification and characterization of OmcZ, an outer-surface, octaheme c-type cytochrome essential for optimal current production by Geobacter sulfurreducens. Appl. Environ. Microbiol. 76: 3999-4007.
-
(2010)
Appl. Environ. Microbiol
, vol.76
, pp. 3999-4007
-
-
Inoue, K.1
Qian, X.2
Morgado, L.3
Kim, B.C.4
Mester, T.5
Izallalen, M.6
Salgueiro, C.A.7
Lovley, D.R.8
-
51
-
-
0037379469
-
OmcB, a c-type polyheme cytochrome, involved in Fe(III) reduction in Geobacter sulfurreducens
-
Leang C, Coppi MV, Lovley DR. 2003. OmcB, a c-type polyheme cytochrome, involved in Fe(III) reduction in Geobacter sulfurreducens. J. Bacteriol. 185:2096 -2103.
-
(2003)
J. Bacteriol
, vol.185
, pp. 2096-2103
-
-
Leang, C.1
Coppi, M.V.2
Lovley, D.R.3
-
52
-
-
25144513177
-
Inhibition of NO3 _ and NO2 _ reduction by microbial Fe(III) reduction: evidence of a reaction betweenNO2 _ and cell surface-bound Fe2_
-
Coby AJ, Picardal FW. 2005. Inhibition of NO3 _ and NO2 _ reduction by microbial Fe(III) reduction: evidence of a reaction betweenNO2 _ and cell surface-bound Fe2_. Appl. Environ. Microbiol. 71:5267-5274.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 5267-5274
-
-
Coby, A.J.1
Picardal, F.W.2
-
53
-
-
79959886819
-
Bioenergetic challenges of microbial iron metabolisms
-
Bird LJ, Bonnefoy V, Newman DK. 2011. Bioenergetic challenges of microbial iron metabolisms. Trends Microbiol. 19:330 -340.
-
(2011)
Trends Microbiol
, vol.19
, pp. 330-340
-
-
Bird, L.J.1
Bonnefoy, V.2
Newman, D.K.3
-
54
-
-
84865657350
-
Outermembrane cytochrome-independent reduction of extracellular electron acceptors in Shewanella oneidensis
-
Bücking C, Piepenbrock A, Kappler A, Gescher J. 2012. Outermembrane cytochrome-independent reduction of extracellular electron acceptors in Shewanella oneidensis. Microbiology 158:2144 -2157.
-
(2012)
Microbiology
, vol.158
, pp. 2144-2157
-
-
Bücking, C.1
Piepenbrock, A.2
Kappler, A.3
Gescher, J.4
-
55
-
-
77957937698
-
Iron-oxidizing bacteria: an environmental and genomic perspective
-
Emerson D, Fleming EJ, McBeth JM. 2010. Iron-oxidizing bacteria: an environmental and genomic perspective. Annu. Rev. Microbiol. 64:561- 583.
-
(2010)
Annu. Rev. Microbiol
, vol.64
, pp. 561-583
-
-
Emerson, D.1
Fleming, E.J.2
McBeth, J.M.3
-
56
-
-
33947358262
-
The pio operon is essential for phototrophic Fe(II) oxidation in Rhodopseudomonas palustris TIE-1
-
Jiao Y, Newman DK. 2007. The pio operon is essential for phototrophic Fe(II) oxidation in Rhodopseudomonas palustris TIE-1. J. Bacteriol. 189: 1765-1773.
-
(2007)
J. Bacteriol
, vol.189
, pp. 1765-1773
-
-
Jiao, Y.1
Newman, D.K.2
-
57
-
-
84863581057
-
Identification and characterization of MtoA: a decaheme c-type cytochrome of the neutrophilic Fe(II)-oxidizing bacterium Sideroxydans lithotrophicus ES-1
-
Liu J, Wang Z, Belchik SM, Edwards MJ, Liu C, Kennedy DW, Merkley ED, Lipton MS, Butt JN, Richardson DJ, Zachara JM, Fredrickson JK, Rosso KM, Shi L. 2012. Identification and characterization of MtoA: a decaheme c-type cytochrome of the neutrophilic Fe(II)-oxidizing bacterium Sideroxydans lithotrophicus ES-1. Front. Microbiol. 3:37.
-
(2012)
Front. Microbiol
, vol.3
, pp. 37
-
-
Liu, J.1
Wang, Z.2
Belchik, S.M.3
Edwards, M.J.4
Liu, C.5
Kennedy, D.W.6
Merkley, E.D.7
Lipton, M.S.8
Butt, J.N.9
Richardson, D.J.10
Zachara, J.M.11
Fredrickson, J.K.12
Rosso, K.M.13
Shi, L.14
-
58
-
-
84863507534
-
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data
-
Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28:1647-1649.
-
(2012)
Bioinformatics
, vol.28
, pp. 1647-1649
-
-
Kearse, M.1
Moir, R.2
Wilson, A.3
Stones-Havas, S.4
Cheung, M.5
Sturrock, S.6
Buxton, S.7
Cooper, A.8
Markowitz, S.9
Duran, C.10
Thierer, T.11
Ashton, B.12
Meintjes, P.13
Drummond, A.14
|