메뉴 건너뛰기




Volumn , Issue , 2010, Pages 159-164

miRSAT & miRCDB: An integrated microRNA sequence analysis tool and a cancer-associated microRNA Database

Author keywords

[No Author keywords available]

Indexed keywords

CODING SYSTEM; COMPUTATIONAL SEQUENCES; EVOLUTIONARY HISTORY; EXPRESSION PROFILE; MICRORNA (MIRNA); MIRNA EXPRESSIONS; SEQUENCE ANALYSIS; SEQUENCE LENGTHS;

EID: 84874694340     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (8)

References (33)
  • 1
    • 0027751663 scopus 로고
    • The C. Elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • R. C. Lee, R. L. Feinbaum, and V. Ambros, "The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14," Cell, Vol. 75, no. 5, pp. 843-54, 1993.
    • (1993) Cell , vol.75 , Issue.5 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 2
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • D. P. Bartel, "MicroRNAs: genomics, biogenesis, mechanism, and function," Cell, Vol. 116, no. 2, pp. 281-97, 2004.
    • (2004) Cell , vol.116 , Issue.2 , pp. 281-297
    • Bartel, D.P.1
  • 3
    • 33645321647 scopus 로고    scopus 로고
    • MicroRNAs in cell proliferation, cell death, and tumorigenesis
    • H. W. Hwang, and J. T. Mendell, "MicroRNAs in cell proliferation, cell death, and tumorigenesis," Br J Cancer, Vol. 94, no. 6, pp. 776-80, 2006.
    • (2006) Br J Cancer , vol.94 , Issue.6 , pp. 776-780
    • Hwang, H.W.1    Mendell, J.T.2
  • 4
    • 7444243756 scopus 로고    scopus 로고
    • MicroRNAs and the regulation of cell death
    • P. Xu, M. Guo, and B. A. Hay, "MicroRNAs and the regulation of cell death," Trends Genet, Vol. 20, no. 12, pp. 617-24, 2004.
    • (2004) Trends Genet , vol.20 , Issue.12 , pp. 617-624
    • Xu, P.1    Guo, M.2    Hay, B.A.3
  • 5
    • 33749528151 scopus 로고    scopus 로고
    • MiRNAs and apoptosis: RNAs to die for
    • M. Jovanovic, and M. O. Hengartner, "miRNAs and apoptosis: RNAs to die for," Oncogene, Vol. 25, no. 46, pp. 6176-87, 2006.
    • (2006) Oncogene , vol.25 , Issue.46 , pp. 6176-6187
    • Jovanovic, M.1    Hengartner, M.O.2
  • 6
    • 28144449396 scopus 로고    scopus 로고
    • Developmental biology. Encountering microRNAs in cell fate signaling
    • X. Karp, and V. Ambros, "Developmental biology. Encountering microRNAs in cell fate signaling," Science, Vol. 310, no. 5752, pp. 1288-9, 2005.
    • (2005) Science , vol.310 , Issue.5752 , pp. 1288-1289
    • Karp, X.1    Ambros, V.2
  • 7
    • 0346727524 scopus 로고    scopus 로고
    • MicroRNAs modulate hematopoietic lineage differentiation
    • C. Z. Chen, L. Li, H. F. Lodish et al., "MicroRNAs modulate hematopoietic lineage differentiation," Science, Vol. 303, no. 5654, pp. 83-6, 2004.
    • (2004) Science , vol.303 , Issue.5654 , pp. 83-86
    • Chen, C.Z.1    Li, L.2    Lodish, H.F.3
  • 8
    • 33845242919 scopus 로고    scopus 로고
    • MicroRNAs: Regulators of gene expression and cell differentiation
    • R. A. Shivdasani, "MicroRNAs: regulators of gene expression and cell differentiation," Blood, Vol. 108, no. 12, pp. 3646-53, 2006.
    • (2006) Blood , vol.108 , Issue.12 , pp. 3646-3653
    • Shivdasani, R.A.1
  • 9
    • 26944495173 scopus 로고    scopus 로고
    • MicroRNA function in animal development
    • E. Wienholds, and R. H. Plasterk, "MicroRNA function in animal development," FEBS Lett, Vol. 579, no. 26, pp. 5911-22, 2005.
    • (2005) FEBS Lett , vol.579 , Issue.26 , pp. 5911-5922
    • Wienholds, E.1    Plasterk, R.H.2
  • 10
    • 9144270691 scopus 로고    scopus 로고
    • A pancreatic islet-specific microRNA regulates insulin secretion
    • M. N. Poy, L. Eliasson, J. Krutzfeldt et al., "A pancreatic islet-specific microRNA regulates insulin secretion," Nature, Vol. 432, no. 7014, pp. 226-30, 2004.
    • (2004) Nature , vol.432 , Issue.7014 , pp. 226-230
    • Poy, M.N.1    Eliasson, L.2    Krutzfeldt, J.3
  • 11
    • 0346094457 scopus 로고    scopus 로고
    • Prediction of Mammalian microRNA targets
    • B. P. Lewis, I. H. Shih, M. W. Jones-Rhoades et al., "Prediction of mammalian microRNA targets," Cell, Vol. 115, no. 7, pp. 787-98, 2003.
    • (2003) Cell , vol.115 , Issue.7 , pp. 787-798
    • Lewis, B.P.1    Shih, I.H.2    Jones-Rhoades, M.W.3
  • 12
    • 20944450160 scopus 로고    scopus 로고
    • Combinatorial microRNA target predictions
    • A. Krek, D. Grun, M. N. Poy et al., "Combinatorial microRNA target predictions," Nat Genet, Vol. 37, no. 5, pp. 495-500, 2005.
    • (2005) Nat Genet , vol.37 , Issue.5 , pp. 495-500
    • Krek, A.1    Grun, D.2    Poy, M.N.3
  • 13
    • 14044251458 scopus 로고    scopus 로고
    • Human MicroRNA targets
    • B. John, A. J. Enright, A. Aravin et al., "Human MicroRNA targets," PLoS Biol, Vol. 2, no. 11, pp. e363, 2004.
    • (2004) PLoS Biol , vol.2 , Issue.11
    • John, B.1    Enright, A.J.2    Aravin, A.3
  • 14
    • 58149186499 scopus 로고    scopus 로고
    • MiRecords: An integrated resource for microRNA-target interactions
    • no. Database issue
    • F. Xiao, Z. Zuo, G. Cai et al., "miRecords: an integrated resource for microRNA-target interactions," Nucleic Acids Res, Vol. 37, no. Database issue, pp. D105-10, 2009.
    • (2009) Nucleic Acids Res , vol.37
    • Xiao, F.1    Zuo, Z.2    Cai, G.3
  • 15
    • 33846188098 scopus 로고    scopus 로고
    • MicroRNAs as oncogenes and tumor suppressors
    • B. Zhang, X. Pan, G. P. Cobb et al., "microRNAs as oncogenes and tumor suppressors," Dev Biol, Vol. 302, no. 1, pp. 1-12, 2007.
    • (2007) Dev Biol , vol.302 , Issue.1 , pp. 1-12
    • Zhang, B.1    Pan, X.2    Cobb, G.P.3
  • 17
    • 33750370444 scopus 로고    scopus 로고
    • MicroRNA signatures in human cancers
    • G. A. Calin, and C. M. Croce, "MicroRNA signatures in human cancers," Nat Rev Cancer, Vol. 6, no. 11, pp. 857-66, 2006.
    • (2006) Nat Rev Cancer , vol.6 , Issue.11 , pp. 857-866
    • Calin, G.A.1    Croce, C.M.2
  • 18
    • 23844555119 scopus 로고    scopus 로고
    • MicroRNA gene expression deregulation in human breast cancer
    • M. V. Iorio, M. Ferracin, C. G. Liu et al., "MicroRNA gene expression deregulation in human breast cancer," Cancer Res, Vol. 65, no. 16, pp. 7065-70, 2005.
    • (2005) Cancer Res , vol.65 , Issue.16 , pp. 7065-7070
    • Iorio, M.V.1    Ferracin, M.2    Liu, C.G.3
  • 19
    • 34447134869 scopus 로고    scopus 로고
    • Patterns of known and novel small RNAs in human cervical cancer
    • W. O. Lui, N. Pourmand, B. K. Patterson et al., "Patterns of known and novel small RNAs in human cervical cancer," Cancer Res, Vol. 67, no. 13, pp. 6031-43, 2007.
    • (2007) Cancer Res , vol.67 , Issue.13 , pp. 6031-6043
    • Lui, W.O.1    Pourmand, N.2    Patterson, B.K.3
  • 20
    • 34447117003 scopus 로고    scopus 로고
    • Cyclin G1 is a target of miR-122a, a microRNA frequently down-regulated in human hepatocellular carcinoma
    • L. Gramantieri, M. Ferracin, F. Fornari et al., "Cyclin G1 is a target of miR-122a, a microRNA frequently down-regulated in human hepatocellular carcinoma," Cancer Res, Vol. 67, no. 13, pp. 6092-9, 2007.
    • (2007) Cancer Res , vol.67 , Issue.13 , pp. 6092-6099
    • Gramantieri, L.1    Ferracin, M.2    Fornari, F.3
  • 21
    • 2542626605 scopus 로고    scopus 로고
    • Reduced expression of the let-7 microRNAs in human lung cancers in association with shortened postoperative survival
    • J. Takamizawa, H. Konishi, K. Yanagisawa et al., "Reduced expression of the let-7 microRNAs in human lung cancers in association with shortened postoperative survival," Cancer Res, Vol. 64, no. 11, pp. 3753-6, 2004.
    • (2004) Cancer Res , vol.64 , Issue.11 , pp. 3753-3756
    • Takamizawa, J.1    Konishi, H.2    Yanagisawa, K.3
  • 22
    • 34447132924 scopus 로고    scopus 로고
    • MicroRNA expression profiling in prostate cancer
    • K. P. Porkka, M. J. Pfeiffer, K. K. Waltering et al., "MicroRNA expression profiling in prostate cancer," Cancer Res, Vol. 67, no. 13, pp. 6130-5, 2007.
    • (2007) Cancer Res , vol.67 , Issue.13 , pp. 6130-6135
    • Porkka, K.P.1    Pfeiffer, M.J.2    Waltering, K.K.3
  • 23
    • 38049123402 scopus 로고    scopus 로고
    • MicroRNA expression signatures accurately discriminate acute lymphoblastic leukemia from acute myeloid leukemia
    • S. Mi, J. Lu, M. Sun et al., "MicroRNA expression signatures accurately discriminate acute lymphoblastic leukemia from acute myeloid leukemia," Proc Natl Acad Sci U S A, Vol. 104, no. 50, pp. 19971-6, 2007.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , Issue.50 , pp. 19971-19976
    • Mi, S.1    Lu, J.2    Sun, M.3
  • 25
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • B. P. Lewis, C. B. Burge, and D. P. Bartel, "Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets," Cell, Vol. 120, no. 1, pp. 15-20, 2005.
    • (2005) Cell , vol.120 , Issue.1 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 27
    • 20444460289 scopus 로고    scopus 로고
    • MicroRNA expression profiles classify human cancers
    • J. Lu, G. Getz, E. A. Miska et al., "MicroRNA expression profiles classify human cancers," Nature, Vol. 435, no. 7043, pp. 834-8, 2005.
    • (2005) Nature , vol.435 , Issue.7043 , pp. 834-838
    • Lu, J.1    Getz, G.2    Miska, E.A.3
  • 28
    • 55549120234 scopus 로고    scopus 로고
    • MicroRNA miR-21 overexpression in human breast cancer is associated with advanced clinical stage, lymph node metastasis and patient poor prognosis
    • L. X. Yan, X. F. Huang, Q. Shao et al., "MicroRNA miR-21 overexpression in human breast cancer is associated with advanced clinical stage, lymph node metastasis and patient poor prognosis," RNA, Vol. 14, no. 11, pp. 2348-60, 2008.
    • (2008) RNA , vol.14 , Issue.11 , pp. 2348-2360
    • Yan, L.X.1    Huang, X.F.2    Shao, Q.3
  • 29
    • 63449123568 scopus 로고    scopus 로고
    • MiRNA expression in urothelial carcinomas: Important roles of miR-10a, miR-222, miR-125b, miR-7 and miR-452 for tumor stage and metastasis, and frequent homozygous losses of miR-31
    • S. Veerla, D. Lindgren, A. Kvist et al., "MiRNA expression in urothelial carcinomas: important roles of miR-10a, miR-222, miR-125b, miR-7 and miR-452 for tumor stage and metastasis, and frequent homozygous losses of miR-31," Int J Cancer, Vol. 124, no. 9, pp. 2236-42, 2009.
    • (2009) Int J Cancer , vol.124 , Issue.9 , pp. 2236-2242
    • Veerla, S.1    Lindgren, D.2    Kvist, A.3
  • 30
    • 84883580481 scopus 로고    scopus 로고
    • November 18
    • "PubMed," November 18, 2009; http://www.ncbi.nlm.nih.gov/ PubMed/.
    • (2009) PubMed
  • 31
    • 58149179989 scopus 로고    scopus 로고
    • MiR2Disease: A manually curated database for microRNA deregulation in human disease
    • no. Database issue
    • Q. Jiang, Y. Wang, Y. Hao et al., "miR2Disease: a manually curated database for microRNA deregulation in human disease," Nucleic Acids Res, Vol. 37, no. Database issue, pp. D98-104, 2009.
    • (2009) Nucleic Acids Res , vol.37
    • Jiang, Q.1    Wang, Y.2    Hao, Y.3
  • 32
    • 84883594079 scopus 로고    scopus 로고
    • October 21
    • X. Wang. "miRDB wiki," October 21, 2009; http://mirdb.org/wiki/ index.php5?title=Main-Page.
    • (2009) MiRDB Wiki
    • Wang, X.1
  • 33
    • 31044444975 scopus 로고    scopus 로고
    • TarBase: A comprehensive database of experimentally supported animal microRNA targets
    • P. Sethupathy, B. Corda, and A. G. Hatzigeorgiou, "TarBase: A comprehensive database of experimentally supported animal microRNA targets," RNA, Vol. 12, no. 2, pp. 192-7, 2006.
    • (2006) RNA , vol.12 , Issue.2 , pp. 192-197
    • Sethupathy, P.1    Corda, B.2    Hatzigeorgiou, A.G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.