Molecular identification and phylogenetic study of coxsackievirus A24 variant isolated from an outbreak of acute hemorrhagic conjunctivitis in India in 2010

Archives of Virology

Volumn 158, Issue 3, 2013, Pages 679-684

  Shukla, Deepti ^a   Kumar, Arvind ^a   Srivastava, Shalini ^b   Dhole, Tapan N ^a  

^a SANJAY GANDHI POSTGRADUATE INSTITUTE OF MEDICAL SCIENCES   (India)

^b UNIVERSITY OF LUCKNOW   (India)

Author keywords

3C; Coxsackievirus A24; Molecular identification; Phylogenetic analysis; VP1

Indexed keywords

COXSACKIEVIRUS;

EID: 84874652629     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-012-1520-7     Document Type: Review

References (29)

1. Knowles NJ, Hovi T, Hyypiä T, King AMQ, Lindberg M, Pallansch MA, Palmenberg AC, Simmonds P, Skern T, Stanway G, Yamashita T, Zell R (2011) Picornaviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy: classification and nomenclature of viruses: ninth report of the international committee on taxonomy of viruses. Elsevier, San Diego, pp 855-880.
2. Pallansch MA, Roos RP (2001) Enteroviruses: polioviruses, coxsackieviruses, echoviruses and newer enteroviruses. In: Knipe DM et al (eds) Fields virology, 4th edn. Lippincott Williams & Wilkins, Philadelphia, pp 723-775.
3. Palacios G, Oberste MS (2005) Enteroviruses as agents of emerging infectious diseases. J Neurovirol 11: 424-433.
4. Bahri O, Rezig D, Nejma-Oueslati BB, Yahia AB, Sassi JB, Hogga N, Sadraoui A, Triki H (2005) Enteroviruses in Tunisia: virological surveillance over 12 years (1992-2003). J Med Microbiol 54: 63-69.
5. Mirkovic RR, Schmidt NJ, Yin-Murphy M, Melnick ML (1974) Enterovirus etiology of the Singapore epidemic of acute conjunctivitis. Intervirology 4: 119-127.
6. Khan A, Sharif S, Shaukat S, Khan S, Zaidi S (2008) An outbreak of acute hemorrhagic conjunctivitis (AHC) caused by coxsackievirus A24 variant in Pakistan. Virus Res 137: 150-152.
7. Yeo DS, Seah SG, Chew JS, Lim EA, Liaw JC, Loh JP, Tan BH (2007) Molecular identification of coxsackievirus A24 variant, isolated from an outbreak of acute hemorrhagic conjunctivitis in Singapore in 2005. Arch Virol 152: 2005-2016.
8. Wu D, Ke CW, Mo YL, Sun LM, Li H, Chen QX, Zou LR, Fang L, Huang P, Zhen HY (2008) Multiple outbreaks of acute hemorrhagic conjunctivitis due to a variant of coxsackievirus A24: Guangdong, China 2007. J Med Virol 80: 1762-1768.
9. Leveque N, Amine IL, Cartet G, Hammani AB, Khazraji YC, Lina B, Muyembe JJ, Norder H, Chomel JJ (2006) Two outbreaks of acute hemorrhagic conjunctivitis in Africa due to genotype III coxsackievirus A24 variant. Eur J Clin Microbiol Infect Dis 26: 199-202.
10. Tavares FN, Costa EV, Oliveira SS, Nicolai CC, Baran M, da Silva EE (2006) Acute hemorrhagic conjunctivitis and coxsackievirus A24v, Rio de Janeiro, Brazil, 2004. Emerg Infect Dis 12: 495-497.
11. Park K, Lee K, Lee J, Yeo S, Lee S, Cheon DS, Choi W, Ahn J, Kim S, Jee Y (2006) Acute hemorrhagic conjunctivitis epidemic caused by coxsackievirus A24 variants in Korea during 2002-2003. J Med Virol 78: 91-97.
12. Kurokawa M, Rai SK, Ono K, Gurung R, Ruit S (2006) Viral investigation of acute hemorrhagic conjunctivitis outbreak (2003) in Nepal using molecular methods. Southeast Asian J Trop Med Public Health 37: 904-910.
13. Cabrerizo M, Echevarria JE, Otero A, Lucas P, Trallero G (2008) Molecular characterization of a coxsackievirus A24 variant that caused an outbreak of acute haemorrhagic conjunctivitis in Spain, 2004. J Clin Virol 43: 323-327.
14. Chu PY, Ke GM, Chang CH, Lin JC, Sun CY, Huang WL, Tsai YC, Ke LY, Lin KH (2009) Molecular epidemiology of coxsackie A type 24 variant in Taiwan, 2000-2007. J Clin Virol 45: 285-291.
15. Tavares FN, Campos Rde M, Burlandy FM, Fontella R, de Melo MM, da Costa EV, da Silva EE (2011) Molecular characterization and phylogenetic study of coxsackievirus A24v causing outbreaks of acute hemorrhagic conjunctivitis (AHC) in Brazil. PLoS One 6: e23206.
16. De W, Huanying Z, Hui L, Corina M, Xue G, Leng L, Hanri Z, Ling F, Yanling M, Huiqiong Z, Huan Z, Jing K, Caiyun L, Yoshida H, Changwen K (2012) Phylogenetic and molecular characterization of coxsackievirus A24 variant isolates from a 2010 acute hemorrhagic conjunctivitis outbreak in Guangdong. China. Virol J 9: 41.
17. Aubry C, Gautret P, Nougairede A, Dussouil AS, Botelho-Nevers E, Zandotti C, De Lamballerie X, Brouqui P, Parola P (2012) 2012 outbreak of acute haemorrhagic conjunctivitis in Indian Ocean Islands: identification of coxsackievirus A24 in a returned traveller. Euro Surveill 17, pii: 20185.
18. Fonseca MC, Sarmiento L, Resik S, Pereda N, Rodríguez H, Kourí V, Martínez PA, Piñón A, Limonta D, Más P, Hung LH (2012) Isolation of Coxsackievirus A24 variant from patients with hemorrhagic conjunctivitis in Cuba, 2008-2009. J Clin Virol 53: 77-81.
19. Christopher S, John TJ, Charles V, Ray S (1977) Coxsackievirus A24 variant EH 24/70 and enterovirus type 70 in an epidemic of acute haemorrhagic conjunctivitis-a preliminary report. Indian J Med Res 65: 593-595.
20. Christopher S, Theogaraj S, Godbole S, John TJ (1982) An epidemic of acute hemorrhagic conjunctivitis due to coxsackievirus A24. J Infect Dis 146: 16-19.
21. Broor S, Kishore J, Dogra V, Satapathy G, Seth P (1992) An epidemic of acute haemorrhagic conjunctivitis caused by coxsackie A24 variant. Indian J Med Res 95: 253-255.
22. Kishore J, Isomura S (2002) Detection & differentiation of Coxsackie A 24 variant isolated from an epidemic of acute haemorrhagic conjunctivitis in north India by RT-PCR using a novel primer pair. Indian J Med Res 115: 176-183.
23. Madhavan HN, Malathy J, Priya K (2000) An outbreak of acute conjunctivitis caused by Coxsackie virus A 24. Indian J Ophthalmol 48: 159.
24. Gopalkrishna V, Patil PR, Kolhapure RM, Bilaiya H, Fulmali PV, Deolankar RP (2007) Outbreak of acute hemorrhagic conjunctivitis in Maharashtra and Gujarat states of India, caused by Coxsackie virus A-24 variant. J Med Virol 79: 748-753.
25. Gunson RN, Maclean AR, Shepherd SJ, Carman WF (2009) Simultaneous detection and quantitation of cytomegalovirus, Epstein-Barr virus, and adenovirus by use of real-time PCR and pooled standards. J Clin Microbiol 47: 765-770.
26. Nix WA, Oberste MS, Pallansch MA (2006) Sensitive, semi nested PCR amplification of VP1 sequences for direct identification of all enterovirus serotypes from original clinical specimens. J Clin Microbiol 44: 2698-2704.
27. Kimura M (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120.
28. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. Mol Biol Evol 24: 1596-1599.
29. Goh KT, Ooi PL, Miyamura K, Ogino T, Yamazaki S (1990) Acute haemorrhagic conjunctivitis: seroepidemiology of coxsackievirus A24 variant and enterovirus 70 in Singapore. J Med Virol 31: 245-247.