-
1
-
-
70349964711
-
Genomic mutation rates: what high-throughput methods can tell us
-
Nishant K. T, Singh N. D, Alani E, (2009) Genomic mutation rates: what high-throughput methods can tell us. Bioessays 31: 912-920.
-
(2009)
Bioessays
, vol.31
, pp. 912-920
-
-
Nishant, K.T.1
Singh, N.D.2
Alani, E.3
-
2
-
-
67649369319
-
Variation in the ratio of nucleotide substitution and indel rates across genomes in mammals and bacteria
-
Chen J. Q, Wu Y, Yang H, Bergelson J, Kreitman M, et al. (2009) Variation in the ratio of nucleotide substitution and indel rates across genomes in mammals and bacteria. Mol Biol Evol 26: 1523-1531.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 1523-1531
-
-
Chen, J.Q.1
Wu, Y.2
Yang, H.3
Bergelson, J.4
Kreitman, M.5
-
3
-
-
0141764855
-
In polymorphic genomic regions indels cluster with nucleotide polymorphism: Quantum Genomics
-
Longman-Jacobsen N, Williamson J. F, Dawkins R. L, Gaudieri S, (2003) In polymorphic genomic regions indels cluster with nucleotide polymorphism: Quantum Genomics. Gene 312: 257-261.
-
(2003)
Gene
, vol.312
, pp. 257-261
-
-
Longman-Jacobsen, N.1
Williamson, J.F.2
Dawkins, R.L.3
Gaudieri, S.4
-
4
-
-
51349155028
-
Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes
-
Tian D, Wang Q, Zhang P, Araki H, Yang S, et al. (2008) Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes. Nature 455: 105-108.
-
(2008)
Nature
, vol.455
, pp. 105-108
-
-
Tian, D.1
Wang, Q.2
Zhang, P.3
Araki, H.4
Yang, S.5
-
5
-
-
51349160932
-
The pattern of insertion/deletion polymorphism in Arabidopsis thaliana
-
Zhang W, Sun X, Yuan H, Araki H, Wang J, et al. (2008) The pattern of insertion/deletion polymorphism in Arabidopsis thaliana. Mol Genet Genomics 280: 351-361.
-
(2008)
Mol Genet Genomics
, vol.280
, pp. 351-361
-
-
Zhang, W.1
Sun, X.2
Yuan, H.3
Araki, H.4
Wang, J.5
-
6
-
-
70349934568
-
Genomewide association between insertions/deletions and the nucleotide diversity in bacteria
-
Zhu L, Wang Q, Tang P, Araki H, Tian D, (2009) Genomewide association between insertions/deletions and the nucleotide diversity in bacteria. Mol Biol Evol 26: 2353-2361.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 2353-2361
-
-
Zhu, L.1
Wang, Q.2
Tang, P.3
Araki, H.4
Tian, D.5
-
7
-
-
57049144774
-
Evolutionary pattern of protein architecture in mammal and fruit fly genomes
-
Yang H, Wu Y, Feng J, Yang S, Tian D, (2009) Evolutionary pattern of protein architecture in mammal and fruit fly genomes. Genomics 93: 90-97.
-
(2009)
Genomics
, vol.93
, pp. 90-97
-
-
Yang, H.1
Wu, Y.2
Feng, J.3
Yang, S.4
Tian, D.5
-
8
-
-
77951700086
-
Mutation spectrum revealed by breakpoint sequencing of human germline CNVs
-
Conrad D. F, Bird C, Blackburne B, Lindsay S, Mamanova L, et al. (2010) Mutation spectrum revealed by breakpoint sequencing of human germline CNVs. Nat Genet 42: 385-391.
-
(2010)
Nat Genet
, vol.42
, pp. 385-391
-
-
Conrad, D.F.1
Bird, C.2
Blackburne, B.3
Lindsay, S.4
Mamanova, L.5
-
9
-
-
77950461601
-
Origins and functional impact of copy number variation in the human genome
-
Conrad D. F, Pinto D, Redon R, Feuk L, Gokcumen O, et al. (2010) Origins and functional impact of copy number variation in the human genome. Nature 464: 704-712.
-
(2010)
Nature
, vol.464
, pp. 704-712
-
-
Conrad, D.F.1
Pinto, D.2
Redon, R.3
Feuk, L.4
Gokcumen, O.5
-
10
-
-
61349141884
-
Cryptic variation in the human mutation rate
-
doi:10.1371/journal.pbio.1000027
-
Hodgkinson A, Ladoukakis E, Eyre-Walker A, (2009) Cryptic variation in the human mutation rate. PLoS Biol 7: e1000027 doi:10.1371/journal.pbio.1000027.
-
(2009)
PLoS Biol
, vol.7
-
-
Hodgkinson, A.1
Ladoukakis, E.2
Eyre-Walker, A.3
-
11
-
-
74549138184
-
Indel-associated mutation rate varies with mating system in flowering plants
-
Hollister J. D, Ross-Ibarra J, Gaut B. S, (2010) Indel-associated mutation rate varies with mating system in flowering plants. Mol Biol Evol 27: 409-416.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 409-416
-
-
Hollister, J.D.1
Ross-Ibarra, J.2
Gaut, B.S.3
-
12
-
-
55849098118
-
T antigen mutations are a human tumor-specific signature for Merkel cell polyomavirus
-
Shuda M, Feng H, Kwun H. J, Rosen S. T, Gjoerup O, et al. (2008) T antigen mutations are a human tumor-specific signature for Merkel cell polyomavirus. Proc Natl Acad Sci U S A 105: 16272-16277.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 16272-16277
-
-
Shuda, M.1
Feng, H.2
Kwun, H.J.3
Rosen, S.T.4
Gjoerup, O.5
-
13
-
-
3042559580
-
Escherichia coli as a model system to study DNA repair genes of eukaryotic organisms
-
Augusto-Pinto L, Silva C, Lopes D, Machado-Silva A, Machado C. R, (2003) Escherichia coli as a model system to study DNA repair genes of eukaryotic organisms. Genet Mol Res 2: 77-91.
-
(2003)
Genet Mol Res
, vol.2
, pp. 77-91
-
-
Augusto-Pinto, L.1
Silva, C.2
Lopes, D.3
Machado-Silva, A.4
Machado, C.R.5
-
14
-
-
62649089109
-
Population genomics of domestic and wild yeasts
-
Liti G, Carter D. M, Moses A. M, Warringer J, Parts L, et al. (2009) Population genomics of domestic and wild yeasts. Nature 458: 337-341.
-
(2009)
Nature
, vol.458
, pp. 337-341
-
-
Liti, G.1
Carter, D.M.2
Moses, A.M.3
Warringer, J.4
Parts, L.5
-
15
-
-
70349770681
-
Natural history of budding yeast
-
Greig D, Leu J. Y, (2009) Natural history of budding yeast. Curr Biol 19: R886-R890.
-
(2009)
Curr Biol
, vol.19
, pp. 886-890
-
-
Greig, D.1
Leu, J.Y.2
-
16
-
-
0037910313
-
Patterns of transitional mutation biases within and among mammalian genomes
-
Rosenberg M. S, Subramanian S, Kumar S, (2003) Patterns of transitional mutation biases within and among mammalian genomes. Mol Biol Evol 20: 988-993.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 988-993
-
-
Rosenberg, M.S.1
Subramanian, S.2
Kumar, S.3
-
17
-
-
0034669125
-
All three SOS-inducible DNA polymerases (Pol II, Pol IV and Pol V) are involved in induced mutagenesis
-
Napolitano R, Janel-Bintz R, Wagner J, Fuchs R. P, (2000) All three SOS-inducible DNA polymerases (Pol II, Pol IV and Pol V) are involved in induced mutagenesis. Embo J 19: 6259-6265.
-
(2000)
Embo J
, vol.19
, pp. 6259-6265
-
-
Napolitano, R.1
Janel-Bintz, R.2
Wagner, J.3
Fuchs, R.P.4
-
18
-
-
35648951199
-
What a difference a decade makes: insights into translesion DNA synthesis
-
Yang W, Woodgate R, (2007) What a difference a decade makes: insights into translesion DNA synthesis. Proc Natl Acad Sci U S A 104: 15591-15598.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 15591-15598
-
-
Yang, W.1
Woodgate, R.2
-
19
-
-
24944477416
-
A switch from high-fidelity to error-prone DNA double-strand break repair underlies stress-induced mutation
-
Ponder R. G, Fonville N. C, Rosenberg S. M, (2005) A switch from high-fidelity to error-prone DNA double-strand break repair underlies stress-induced mutation. Mol Cell 19: 791-804.
-
(2005)
Mol Cell
, vol.19
, pp. 791-804
-
-
Ponder, R.G.1
Fonville, N.C.2
Rosenberg, S.M.3
-
20
-
-
0033880695
-
Escherichia coli DNA polymerase IV mutator activity: genetic requirements and mutational specificity
-
Wagner J, Nohmi T, (2000) Escherichia coli DNA polymerase IV mutator activity: genetic requirements and mutational specificity. J Bacteriol 182: 4587-4595.
-
(2000)
J Bacteriol
, vol.182
, pp. 4587-4595
-
-
Wagner, J.1
Nohmi, T.2
-
21
-
-
0034681199
-
Highly mutagenic replication by DNA polymerase V (UmuC) provides a mechanistic basis for SOS untargeted mutagenesis
-
Maor-Shoshani A, Reuven N. B, Tomer G, Livneh Z, (2000) Highly mutagenic replication by DNA polymerase V (UmuC) provides a mechanistic basis for SOS untargeted mutagenesis. Proc Natl Acad Sci U S A 97: 565-570.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 565-570
-
-
Maor-Shoshani, A.1
Reuven, N.B.2
Tomer, G.3
Livneh, Z.4
-
22
-
-
0034087476
-
Intrinsic polymerase activities of UmuD'(2)C and MucA'(2)B are responsible for their different mutagenic properties during bypass of a T-T cis-syn cyclobutane dimer
-
O'Grady P. I, Borden A, Vandewiele D, Ozgenc A, Woodgate R, et al. (2000) Intrinsic polymerase activities of UmuD'(2)C and MucA'(2)B are responsible for their different mutagenic properties during bypass of a T-T cis-syn cyclobutane dimer. J Bacteriol 182: 2285-2291.
-
(2000)
J Bacteriol
, vol.182
, pp. 2285-2291
-
-
O'Grady, P.I.1
Borden, A.2
Vandewiele, D.3
Ozgenc, A.4
Woodgate, R.5
-
23
-
-
0032829121
-
A UmuD,C-dependent pathway for spontaneous G:C to C:G transversions in stationary phase Escherichia coli mut Y
-
Timms A. R, Muriel W, Bridges B. A, (1999) A UmuD,C-dependent pathway for spontaneous G:C to C:G transversions in stationary phase Escherichia coli mut Y. Mutat Res 435: 77-80.
-
(1999)
Mutat Res
, vol.435
, pp. 77-80
-
-
Timms, A.R.1
Muriel, W.2
Bridges, B.A.3
-
24
-
-
33947432388
-
Replication fork stalling at natural impediments
-
Mirkin E. V, Mirkin S. M, (2007) Replication fork stalling at natural impediments. Microbiol Mol Biol Rev 71: 13-35.
-
(2007)
Microbiol Mol Biol Rev
, vol.71
, pp. 13-35
-
-
Mirkin, E.V.1
Mirkin, S.M.2
-
25
-
-
0031797308
-
The mutation rates of di-, tri- and tetranucleotide repeats in Drosophila melanogaster
-
Schug M. D, Hutter C. M, Wetterstrand K. A, Gaudette M. S, Mackay T. F, et al. (1998) The mutation rates of di-, tri- and tetranucleotide repeats in Drosophila melanogaster. Mol Biol Evol 15: 1751-1760.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 1751-1760
-
-
Schug, M.D.1
Hutter, C.M.2
Wetterstrand, K.A.3
Gaudette, M.S.4
Mackay, T.F.5
-
26
-
-
0013997442
-
Frameshift mutations and the genetic code. This paper is dedicated to Professor Theodosius Dobzhansky on the occasion of his 66th birthday
-
Streisinger G, Okada Y, Emrich J, Newton J, Tsugita A, et al. (1966) Frameshift mutations and the genetic code. This paper is dedicated to Professor Theodosius Dobzhansky on the occasion of his 66th birthday. Cold Spring Harb Symp Quant Biol 31: 77-84.
-
(1966)
Cold Spring Harb Symp Quant Biol
, vol.31
, pp. 77-84
-
-
Streisinger, G.1
Okada, Y.2
Emrich, J.3
Newton, J.4
Tsugita, A.5
-
27
-
-
0036861699
-
The roles of REV3 and RAD57 in double-strand-break-repair-induced mutagenesis of Saccharomyces cerevisiae
-
Rattray A. J, Shafer B. K, McGill C. B, Strathern J. N, (2002) The roles of REV3 and RAD57 in double-strand-break-repair-induced mutagenesis of Saccharomyces cerevisiae. Genetics 162: 1063-1077.
-
(2002)
Genetics
, vol.162
, pp. 1063-1077
-
-
Rattray, A.J.1
Shafer, B.K.2
McGill, C.B.3
Strathern, J.N.4
-
28
-
-
0034720286
-
Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis
-
Tang M, Pham P, Shen X, Taylor J. S, O'Donnell M, et al. (2000) Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis. Nature 404: 1014-1018.
-
(2000)
Nature
, vol.404
, pp. 1014-1018
-
-
Tang, M.1
Pham, P.2
Shen, X.3
Taylor, J.S.4
O'Donnell, M.5
-
29
-
-
50149084043
-
Double-strand breaks associated with repetitive DNA can reshape the genome
-
Argueso J. L, Westmoreland J, Mieczkowski P. A, Gawel M, Petes T. D, et al. (2008) Double-strand breaks associated with repetitive DNA can reshape the genome. Proc Natl Acad Sci U S A 105: 11845-11850.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 11845-11850
-
-
Argueso, J.L.1
Westmoreland, J.2
Mieczkowski, P.A.3
Gawel, M.4
Petes, T.D.5
-
30
-
-
40849138236
-
Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiae
-
Lang G. I, Murray A. W, (2008) Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiae. Genetics 178: 67-82.
-
(2008)
Genetics
, vol.178
, pp. 67-82
-
-
Lang, G.I.1
Murray, A.W.2
-
31
-
-
78651311207
-
dbDNV: a resource of duplicated gene nucleotide variants in human genome
-
Ho M. R, Tsai K. W, Chen C. H, Lin W. C, (2011) dbDNV: a resource of duplicated gene nucleotide variants in human genome. Nucleic Acids Res 39: D920-D925.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 920-925
-
-
Ho, M.R.1
Tsai, K.W.2
Chen, C.H.3
Lin, W.C.4
-
32
-
-
66349113764
-
Unstable tandem repeats in promoters confer transcriptional evolvability
-
Vinces M. D, Legendre M, Caldara M, Hagihara M, Verstrepen K. J, (2009) Unstable tandem repeats in promoters confer transcriptional evolvability. Science 324: 1213-1216.
-
(2009)
Science
, vol.324
, pp. 1213-1216
-
-
Vinces, M.D.1
Legendre, M.2
Caldara, M.3
Hagihara, M.4
Verstrepen, K.J.5
-
33
-
-
33748900570
-
Accumulation of recessive lethal mutations in Saccharomyces cerevisiae mlh1 mismatch repair mutants is not associated with gross chromosomal rearrangements
-
Heck J. A, Gresham D, Botstein D, Alani E, (2006) Accumulation of recessive lethal mutations in Saccharomyces cerevisiae mlh1 mismatch repair mutants is not associated with gross chromosomal rearrangements. Genetics 174: 519-523.
-
(2006)
Genetics
, vol.174
, pp. 519-523
-
-
Heck, J.A.1
Gresham, D.2
Botstein, D.3
Alani, E.4
-
34
-
-
59249089471
-
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
-
doi:10.1371/journal.pgen.1000344
-
Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, et al. (2009) Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet 5: e1000344 doi:10.1371/journal.pgen.1000344.
-
(2009)
PLoS Genet
, vol.5
-
-
Touchon, M.1
Hoede, C.2
Tenaillon, O.3
Barbe, V.4
Baeriswyl, S.5
-
35
-
-
0000732090
-
Evolution of protein molecules
-
In: Munro H. N, editors, New York, Academic Press
-
Jukes T. H, Cantor C. R, (1969) Evolution of protein molecules. In: Munro H. N, editors. Mammalian protein metabolism New York Academic Press pp. 21-132.
-
(1969)
Mammalian Protein Metabolism
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
36
-
-
37249014088
-
Quantitative genomics of locomotor behavior in Drosophila melanogaster
-
Jordan K. W, Carbone M. A, Yamamoto A, Morgan T. J, Mackay T. F, (2007) Quantitative genomics of locomotor behavior in Drosophila melanogaster. Genome Biol 8: R172.
-
(2007)
Genome Biol
, vol.8
-
-
Jordan, K.W.1
Carbone, M.A.2
Yamamoto, A.3
Morgan, T.J.4
Mackay, T.F.5
-
37
-
-
24744453083
-
Rapid evolution of genomic Acp complement in the melanogaster subgroup of Drosophila
-
Begun D. J, Lindfors H. A, (2005) Rapid evolution of genomic Acp complement in the melanogaster subgroup of Drosophila. Mol Biol Evol 22: 2010-2021.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 2010-2021
-
-
Begun, D.J.1
Lindfors, H.A.2
-
38
-
-
66349117823
-
Fluctuation analysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis
-
Hall B. M, Ma C. X, Liang P, Singh K. K, (2009) Fluctuation analysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis. Bioinformatics 25: 1564-1565.
-
(2009)
Bioinformatics
, vol.25
, pp. 1564-1565
-
-
Hall, B.M.1
Ma, C.X.2
Liang, P.3
Singh, K.K.4
-
39
-
-
0026470403
-
On fluctuation analysis: a new, simple and efficient method for computing the expected number of mutants
-
Sarkar S, Ma W. T, Sandri G. H, (1992) On fluctuation analysis: a new, simple and efficient method for computing the expected number of mutants. Genetica 85: 173-179.
-
(1992)
Genetica
, vol.85
, pp. 173-179
-
-
Sarkar, S.1
Ma, W.T.2
Sandri, G.H.3
-
40
-
-
0034006621
-
Determining mutation rates in bacterial populations
-
Rosche W. A, Foster P. L, (2000) Determining mutation rates in bacterial populations. Methods 20: 4-17.
-
(2000)
Methods
, vol.20
, pp. 4-17
-
-
Rosche, W.A.1
Foster, P.L.2
|