메뉴 건너뛰기




Volumn 161, Issue 3, 2013, Pages 1445-1457

Structure-guided engineering of plant phytochrome B with altered photochemistry and light signaling

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84874595646     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.112.208892     Document Type: Article
Times cited : (42)

References (56)
  • 2
    • 33746428382 scopus 로고    scopus 로고
    • Photoactivated phytochrome induces rapid PIF3 phosphorylation prior to proteasomemediated degradation
    • Al-Sady B, Ni W, Kircher S, Schäfer E, Quail PH (2006) Photoactivated phytochrome induces rapid PIF3 phosphorylation prior to proteasomemediated degradation. Mol Cell 23: 439-446
    • (2006) Mol Cell , vol.23 , pp. 439-446
    • Al-Sady, B.1    Ni, W.2    Kircher, S.3    Schäfer, E.4    Quail, P.H.5
  • 4
    • 0027938970 scopus 로고
    • Signaling among neighboring plants and the development of size inequalities in plant populations
    • Ballaré CL, Scopel AL, Jordan ET, Vierstra RD (1994) Signaling among neighboring plants and the development of size inequalities in plant populations. Proc Natl Acad Sci USA 91: 10094-10098
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 10094-10098
    • Ballaré, C.L.1    Scopel, A.L.2    Jordan, E.T.3    Vierstra, R.D.4
  • 5
    • 84864860526 scopus 로고    scopus 로고
    • Structure of a bacteriophytochrome and lightstimulated protomer swapping with a gene repressor
    • Bellini D, Papiz MZ (2012) Structure of a bacteriophytochrome and lightstimulated protomer swapping with a gene repressor. Structure 20: 1436-1446
    • (2012) Structure , vol.20 , pp. 1436-1446
    • Bellini, D.1    Papiz, M.Z.2
  • 6
    • 0035856979 scopus 로고    scopus 로고
    • Bacteriophytochromes are photochromic histidine kinases using a biliverdin chromophore
    • Bhoo SH, Davis SJ, Walker J, Karniol B, Vierstra RD (2001) Bacteriophytochromes are photochromic histidine kinases using a biliverdin chromophore. Nature 414: 776-779
    • (2001) Nature , vol.414 , pp. 776-779
    • Bhoo, S.H.1    Davis, S.J.2    Walker, J.3    Karniol, B.4    Vierstra, R.D.5
  • 7
    • 77955485244 scopus 로고    scopus 로고
    • Affinity purification of the Arabidopsis 26 S proteasome reveals a diverse array of plant proteolytic complexes
    • Book AJ, Gladman NP, Lee SS, Scalf M, Smith LM, Vierstra RD (2010) Affinity purification of the Arabidopsis 26 S proteasome reveals a diverse array of plant proteolytic complexes. J Biol Chem 285: 25554-25569
    • (2010) J Biol Chem , vol.285 , pp. 25554-25569
    • Book, A.J.1    Gladman, N.P.2    Lee, S.S.3    Scalf, M.4    Smith, L.M.5    Vierstra, R.D.6
  • 8
    • 0025885497 scopus 로고
    • Phytochrome a overexpression inhibits hypocotyl elongation in transgenic Arabidopsis
    • Boylan MT, Quail PH (1991) Phytochrome a overexpression inhibits hypocotyl elongation in transgenic Arabidopsis. Proc Natl Acad Sci USA 88: 10806-10810
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 10806-10810
    • Boylan, M.T.1    Quail, P.H.2
  • 9
    • 84872126119 scopus 로고    scopus 로고
    • A photo-labile thioether linkage to phycocyanobilin provides the foundation for the blue/green photocycles in the DXCF-cyanobacteriochromes
    • Burgie ES, Walker JM, Phillips GN Jr, Vierstra RD (2013) A photo-labile thioether linkage to phycocyanobilin provides the foundation for the blue/green photocycles in the DXCF-cyanobacteriochromes. Structure 21: 88-97
    • (2013) Structure , vol.21 , pp. 88-97
    • Burgie, E.S.1    Walker, J.M.2    Phillips Jr., G.N.3    Vierstra, R.D.4
  • 10
    • 80755129056 scopus 로고    scopus 로고
    • Phytochrome signaling mechanisms and the control of plant development
    • Chen M, Chory J (2011) Phytochrome signaling mechanisms and the control of plant development. Trends Cell Biol 21: 664-671
    • (2011) Trends Cell Biol , vol.21 , pp. 664-671
    • Chen, M.1    Chory, J.2
  • 11
    • 0345060801 scopus 로고    scopus 로고
    • Characterization of the requirements for localization of phytochrome B to nuclear bodies
    • Chen M, Schwab R, Chory J (2003) Characterization of the requirements for localization of phytochrome B to nuclear bodies. Proc Natl Acad Sci USA 100: 14493-14498
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 14493-14498
    • Chen, M.1    Schwab, R.2    Chory, J.3
  • 12
    • 0026728663 scopus 로고
    • Phytochrome requires the 6-kDa N-terminal domain for full biological activity
    • Cherry JR, Hondred D, Walker JM, Vierstra RD (1992) Phytochrome requires the 6-kDa N-terminal domain for full biological activity. Proc Natl Acad Sci USA 89: 5039-5043
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 5039-5043
    • Cherry, J.R.1    Hondred, D.2    Walker, J.M.3    Vierstra, R.D.4
  • 13
    • 84865834797 scopus 로고    scopus 로고
    • The light-response BTB1 and BTB2 proteins assemble nuclear ubiquitin ligases that modify phytochrome B and D signaling in Arabidopsis
    • Christians MJ, Gingerich DJ, Hua Z, Lauer TD, Vierstra RD (2012) The light-response BTB1 and BTB2 proteins assemble nuclear ubiquitin ligases that modify phytochrome B and D signaling in Arabidopsis. Plant Physiol 160: 118-134
    • (2012) Plant Physiol , vol.160 , pp. 118-134
    • Christians, M.J.1    Gingerich, D.J.2    Hua, Z.3    Lauer, T.D.4    Vierstra, R.D.5
  • 14
    • 52949096101 scopus 로고    scopus 로고
    • Solution structure of a cyanobacterial phytochrome GAF domain in the red-light-absorbing ground state
    • Cornilescu G, Ulijasz AT, Cornilescu CC, Markley JL, Vierstra RD (2008) Solution structure of a cyanobacterial phytochrome GAF domain in the red-light-absorbing ground state. J Mol Biol 383: 403-413
    • (2008) J Mol Biol , vol.383 , pp. 403-413
    • Cornilescu, G.1    Ulijasz, A.T.2    Cornilescu, C.C.3    Markley, J.L.4    Vierstra, R.D.5
  • 15
    • 0031420987 scopus 로고    scopus 로고
    • Biochemical characterization of Arabidopsis wild-type and mutant phytochrome B holoproteins
    • Elich TD, Chory J (1997) Biochemical characterization of Arabidopsis wild-type and mutant phytochrome B holoproteins. Plant Cell 9: 2271-2280
    • (1997) Plant Cell , vol.9 , pp. 2271-2280
    • Elich, T.D.1    Chory, J.2
  • 16
    • 55749108535 scopus 로고    scopus 로고
    • The structure of a complete phytochrome sensory module in the Pr ground state
    • Essen LO, Mailliet J, Hughes J (2008) The structure of a complete phytochrome sensory module in the Pr ground state. Proc Natl Acad Sci USA 105: 14709-14714
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 14709-14714
    • Essen, L.O.1    Mailliet, J.2    Hughes, J.3
  • 17
    • 4544352058 scopus 로고    scopus 로고
    • Phenotypic characterization of a photomorphogenic mutant
    • Fankhauser C, Casal JJ (2004) Phenotypic characterization of a photomorphogenic mutant. Plant J 39: 747-760
    • (2004) Plant J , vol.39 , pp. 747-760
    • Fankhauser, C.1    Casal, J.J.2
  • 18
    • 10644265997 scopus 로고    scopus 로고
    • Harnessing phytochrome's glowing potential
    • Fischer AJ, Lagarias JC (2004) Harnessing phytochrome's glowing potential. Proc Natl Acad Sci USA 101: 17334-17339
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 17334-17339
    • Fischer, A.J.1    Lagarias, J.C.2
  • 19
    • 72049106410 scopus 로고    scopus 로고
    • Phytochrome functions in Arabidopsis development
    • Franklin KA, Quail PH (2010) Phytochrome functions in Arabidopsis development. J Exp Bot 61: 11-24
    • (2010) J Exp Bot , vol.61 , pp. 11-24
    • Franklin, K.A.1    Quail, P.H.2
  • 20
    • 0035845489 scopus 로고    scopus 로고
    • Genetic engineering of phytochrome biosynthesis in bacteria
    • Gambetta GA, Lagarias JC (2001) Genetic engineering of phytochrome biosynthesis in bacteria. Proc Natl Acad Sci USA 98: 10566-10571
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 10566-10571
    • Gambetta, G.A.1    Lagarias, J.C.2
  • 23
    • 0031779178 scopus 로고    scopus 로고
    • Coordination of phytochrome levels in phyB mutants of Arabidopsis as revealed by apoprotein-specific monoclonal antibodies
    • Hirschfeld M, Tepperman JM, Clack T, Quail PH, Sharrock RA (1998) Coordination of phytochrome levels in phyB mutants of Arabidopsis as revealed by apoprotein-specific monoclonal antibodies. Genetics 149: 523-535
    • (1998) Genetics , vol.149 , pp. 523-535
    • Hirschfeld, M.1    Tepperman, J.M.2    Clack, T.3    Quail, P.H.4    Sharrock, R.A.5
  • 24
    • 67849110085 scopus 로고    scopus 로고
    • A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
    • Hu W, Su YS, Lagarias JC (2009) A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks. Mol Plant 2: 166-182
    • (2009) Mol Plant , vol.2 , pp. 166-182
    • Hu, W.1    Su, Y.S.2    Lagarias, J.C.3
  • 26
    • 27144507187 scopus 로고    scopus 로고
    • Phylogenetic analysis of the phytochrome superfamily reveals distinct microbial subfamilies of photoreceptors
    • Karniol B, Wagner JR, Walker JM, Vierstra RD (2005) Phylogenetic analysis of the phytochrome superfamily reveals distinct microbial subfamilies of photoreceptors. Biochem J 392: 103-116
    • (2005) Biochem J , vol.392 , pp. 103-116
    • Karniol, B.1    Wagner, J.R.2    Walker, J.M.3    Vierstra, R.D.4
  • 27
    • 0035984054 scopus 로고    scopus 로고
    • Nucleocytoplasmic partitioning of the plant photoreceptors phytochrome A, B, C, D, and E is regulated differentially by light and exhibits a diurnal rhythm
    • Kircher S, Gil P, Kozma-Bognár L, Fejes E, Speth V, Husselstein-Muller T, Bauer D, Adám E, Schäfer E, Nagy F (2002) Nucleocytoplasmic partitioning of the plant photoreceptors phytochrome A, B, C, D, and E is regulated differentially by light and exhibits a diurnal rhythm. Plant Cell 14: 1541-1555
    • (2002) Plant Cell , vol.14 , pp. 1541-1555
    • Kircher, S.1    Gil, P.2    Kozma-Bognár, L.3    Fejes, E.4    Speth, V.5    Husselstein-Muller, T.6    Bauer, D.7    Adám, E.8    Schäfer, E.9    Nagy, F.10
  • 28
    • 0034608882 scopus 로고    scopus 로고
    • The histidine kinase-related domain participates in phytochrome B function but is dispensable
    • Krall L, Reed JW (2000) The histidine kinase-related domain participates in phytochrome B function but is dispensable. Proc Natl Acad Sci USA 97: 8169-8174
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 8169-8174
    • Krall, L.1    Reed, J.W.2
  • 29
    • 0034030297 scopus 로고    scopus 로고
    • A new type of mutation in the plant photoreceptor phytochrome B causes loss of photoreversibility and an extremely enhanced light sensitivity
    • Kretsch T, Poppe C, Schäfer E (2000) A new type of mutation in the plant photoreceptor phytochrome B causes loss of photoreversibility and an extremely enhanced light sensitivity. Plant J 22: 177-186
    • (2000) Plant J , vol.22 , pp. 177-186
    • Kretsch, T.1    Poppe, C.2    Schäfer, E.3
  • 30
    • 0029126957 scopus 로고
    • In vivo characterization of phytochrome-phycocyanobilin adducts in yeast
    • Kunkel T, Speth V, Büche C, Schäfer E (1995) In vivo characterization of phytochrome-phycocyanobilin adducts in yeast. J Biol Chem 270: 20193-20200
    • (1995) J Biol Chem , vol.270 , pp. 20193-20200
    • Kunkel, T.1    Speth, V.2    Büche, C.3    Schäfer, E.4
  • 31
    • 77954654259 scopus 로고    scopus 로고
    • Quaternary organization of a phytochrome dimer as revealed by cryoelectron microscopy
    • Li H, Zhang J, Vierstra RD, Li H (2010) Quaternary organization of a phytochrome dimer as revealed by cryoelectron microscopy. Proc Natl Acad Sci USA 107: 10872-10877
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 10872-10877
    • Li, H.1    Zhang, J.2    Vierstra, R.D.3    Li, H.4
  • 32
    • 80053313196 scopus 로고    scopus 로고
    • Spectroscopy and a high-resolution crystal structure of Tyr263 mutants of cyanobacterial phytochrome Cph1
    • Mailliet J, Psakis G, Feilke K, Sineshchekov V, Essen LO, Hughes J (2011) Spectroscopy and a high-resolution crystal structure of Tyr263 mutants of cyanobacterial phytochrome Cph1. J Mol Biol 413: 115-127
    • (2011) J Mol Biol , vol.413 , pp. 115-127
    • Mailliet, J.1    Psakis, G.2    Feilke, K.3    Sineshchekov, V.4    Essen, L.O.5    Hughes, J.6
  • 34
    • 78049254337 scopus 로고    scopus 로고
    • Phytochrome: Structural basis for its functions
    • Nagatani A (2010) Phytochrome: structural basis for its functions. Curr Opin Plant Biol 13: 565-570
    • (2010) Curr Opin Plant Biol , vol.13 , pp. 565-570
    • Nagatani, A.1
  • 35
    • 34250651201 scopus 로고    scopus 로고
    • PIL5, a phytochrome-interacting bHLH protein, regulates gibberellin responsiveness by binding directly to the GAI and RGA promoters in Arabidopsis seeds
    • Oh E, Yamaguchi S, Hu J, Yusuke J, Jung B, Paik I, Lee HS, Sun TP, Kamiya Y, Choi G (2007) PIL5, a phytochrome-interacting bHLH protein, regulates gibberellin responsiveness by binding directly to the GAI and RGA promoters in Arabidopsis seeds. Plant Cell 19: 1192-1208
    • (2007) Plant Cell , vol.19 , pp. 1192-1208
    • Oh, E.1    Yamaguchi, S.2    Hu, J.3    Yusuke, J.4    Jung, B.5    Paik, I.6    Lee, H.S.7    Sun, T.P.8    Kamiya, Y.9    Choi, G.10
  • 36
    • 50849131895 scopus 로고    scopus 로고
    • Mutant screen distinguishes between residues necessary for light-signal perception and signal transfer by phytochrome B
    • Oka Y, Matsushita T, Mochizuki N, Quail PH, Nagatani A (2008) Mutant screen distinguishes between residues necessary for light-signal perception and signal transfer by phytochrome B. PLoS Genet 4: e1000158
    • (2008) PLoS Genet , vol.4
    • Oka, Y.1    Matsushita, T.2    Mochizuki, N.3    Quail, P.H.4    Nagatani, A.5
  • 38
    • 0027949428 scopus 로고
    • Phytochrome A and phytochrome B have overlapping but distinct functions in Arabidopsis development
    • Reed JW, Nagatani A, Elich TD, Fagan M, Chory J (1994) Phytochrome A and phytochrome B have overlapping but distinct functions in Arabidopsis development. Plant Physiol 104: 1139-1149
    • (1994) Plant Physiol , vol.104 , pp. 1139-1149
    • Reed, J.W.1    Nagatani, A.2    Elich, T.D.3    Fagan, M.4    Chory, J.5
  • 39
    • 0027548252 scopus 로고
    • Mutations in the gene for the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development
    • Reed JW, Nagpal P, Poole DS, Furuya M, Chory J (1993) Mutations in the gene for the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development. Plant Cell 5: 147-157
    • (1993) Plant Cell , vol.5 , pp. 147-157
    • Reed, J.W.1    Nagpal, P.2    Poole, D.S.3    Furuya, M.4    Chory, J.5
  • 42
    • 0039932366 scopus 로고
    • Partial purification and peptide mapping of ubiquitin phytochrome conjugates in oat
    • Shanklin J, Jabben M, Vierstra RD (1989) Partial purification and peptide mapping of ubiquitin phytochrome conjugates in oat. Biochemistry 28: 6028-6034
    • (1989) Biochemistry , vol.28 , pp. 6028-6034
    • Shanklin, J.1    Jabben, M.2    Vierstra, R.D.3
  • 43
    • 0024760523 scopus 로고
    • Novel phytochrome sequences in Arabidopsis thaliana: Structure, evolution, and differential expression of a plant regulatory photoreceptor family
    • Sharrock RA, Quail PH (1989) Novel phytochrome sequences in Arabidopsis thaliana: structure, evolution, and differential expression of a plant regulatory photoreceptor family. Genes Dev 3: 1745-1757
    • (1989) Genes Dev , vol.3 , pp. 1745-1757
    • Sharrock, R.A.1    Quail, P.H.2
  • 44
    • 34548309457 scopus 로고    scopus 로고
    • Light-independent phytochrome signaling mediated by dominant GAF domain tyrosine mutants of Arabidopsis phytochromes in transgenic plants
    • Su YS, Lagarias JC (2007) Light-independent phytochrome signaling mediated by dominant GAF domain tyrosine mutants of Arabidopsis phytochromes in transgenic plants. Plant Cell 19: 2124-2139
    • (2007) Plant Cell , vol.19 , pp. 2124-2139
    • Su, Y.S.1    Lagarias, J.C.2
  • 46
    • 79961030921 scopus 로고    scopus 로고
    • Phytochrome signaling: Solving the Gordian knot with microbial relatives
    • Vierstra RD, Zhang J (2011) Phytochrome signaling: solving the Gordian knot with microbial relatives. Trends Plant Sci 16: 417-426
    • (2011) Trends Plant Sci , vol.16 , pp. 417-426
    • Vierstra, R.D.1    Zhang, J.2
  • 48
    • 0029021892 scopus 로고
    • Mutational analysis of phytochrome B identifies a small COOH-terminal-domain region critical for regulatory activity
    • Wagner D, Quail PH (1995) Mutational analysis of phytochrome B identifies a small COOH-terminal-domain region critical for regulatory activity. Proc Natl Acad Sci USA 92: 8596-8600
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 8596-8600
    • Wagner, D.1    Quail, P.H.2
  • 49
    • 0001649223 scopus 로고
    • Overexpression of phytochrome B induces a short hypocotyl phenotype in transgenic Arabidopsis
    • Wagner D, Tepperman JM, Quail PH (1991) Overexpression of phytochrome B induces a short hypocotyl phenotype in transgenic Arabidopsis. Plant Cell 3: 1275-1288
    • (1991) Plant Cell , vol.3 , pp. 1275-1288
    • Wagner, D.1    Tepperman, J.M.2    Quail, P.H.3
  • 50
    • 27844461604 scopus 로고    scopus 로고
    • A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome
    • Wagner JR, Brunzelle JS, Forest KT, Vierstra RD (2005) A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome. Nature 438: 325-331
    • (2005) Nature , vol.438 , pp. 325-331
    • Wagner, J.R.1    Brunzelle, J.S.2    Forest, K.T.3    Vierstra, R.D.4
  • 51
    • 34249728355 scopus 로고    scopus 로고
    • High resolution structure of Deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution
    • Wagner JR, Zhang J, Brunzelle JS, Vierstra RD, Forest KT (2007) High resolution structure of Deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution. J Biol Chem 282: 12298-12309
    • (2007) J Biol Chem , vol.282 , pp. 12298-12309
    • Wagner, J.R.1    Zhang, J.2    Brunzelle, J.S.3    Vierstra, R.D.4    Forest, K.T.5
  • 53
    • 55749108880 scopus 로고    scopus 로고
    • Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: Photoconversion and signal transduction
    • Yang X, Kuk J, Moffat K (2008) Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: photoconversion and signal transduction. Proc Natl Acad Sci USA 105: 14715-14720
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 14715-14720
    • Yang, X.1    Kuk, J.2    Moffat, K.3
  • 54
    • 81555214075 scopus 로고    scopus 로고
    • Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome
    • Yang X, Ren Z, Kuk J, Moffat K (2011) Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome. Nature 479: 428-432
    • (2011) Nature , vol.479 , pp. 428-432
    • Yang, X.1    Ren, Z.2    Kuk, J.3    Moffat, K.4
  • 55
    • 34547628072 scopus 로고    scopus 로고
    • Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion
    • Yang X, Stojkovic EA, Kuk J, Moffat K (2007) Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion. Proc Natl Acad Sci USA 104: 12571-12576
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 12571-12576
    • Yang, X.1    Stojkovic, E.A.2    Kuk, J.3    Moffat, K.4
  • 56
    • 0032506138 scopus 로고    scopus 로고
    • Eukaryotic phytochromes: Light-regulated serine/threonine protein kinases with histidine kinase ancestry
    • Yeh KC, Lagarias JC (1998) Eukaryotic phytochromes: light-regulated serine/threonine protein kinases with histidine kinase ancestry. Proc Natl Acad Sci USA 95: 13976-13981
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 13976-13981
    • Yeh, K.C.1    Lagarias, J.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.