Differential virus host-ranges of the Fuselloviridae of hyperthermophilic Archaea: Implications for evolution in extreme environments

Frontiers in Microbiology

Volumn 3, Issue AUG, 2012, Pages

  Ceballos, Ruben M ^a   Marceau, Caleb D ^b,c   Marceau, Joshua O ^d   Morris, Steven ^b   Clore, Adam J ^b   Stedman, Kenneth M ^b  

^a UNIVERSITY OF MINNESOTA   (United States)

^b PORTLAND STATE UNIVERSITY   (United States)

^c STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d UNIVERSITY OF MONTANA   (United States)

Author keywords

Archaea; Crenarchaea; Fusellovirus; Halo assay; Host range; Hyperthermophilic; Sulfolobus; Sulfolobus spindle shaped virus

Indexed keywords

EID: 84874563772     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2012.00295     Document Type: Article

References (38)

1. Barrangou, R., Fremaux, C., Deveau, H., Richards, M., Boyaval, P., Moineau, S., Romero, D. A., and Horvath, P. (2007). CRISPR provides acquired resistance against viruses in prokaryotes. Science 315, 1709-1712.
2. Cannio, R., Contursi, P., Rossi, M., and Bartolucci, S. (1998). An autonomously replicating transforming vector for Sulfolobus solfataricus. J. Bacteriol. 180, 3237-3240.
3. Cannio, R., Contursi, P., Rossi, M., and Bartolucci, S. (2001). Thermoadaptation of a mesophilic hygromycin B phosphotransferase by directed evolution in hyper-thermophilic Archaea: selection of a stable genetic marker for DNA transfer into Sulfolobus solfataricus. Extermophiles5, 153-159.
4. Chen, L., Brugger, K., Skovgaard, M., Redder, P., She, Q., Torarinsson, E., Greve, B., Awayez, M., Zibat, A., Klenk, H. P., and Garrett, R. A. (2005). The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota. J. Bacteriol. 187, 4992-4999.
5. Frols, S., Gordon, P. M., Panlilio, M. A., Schleper, C., and Sensen, C. W. (2007). Elucidating the transcription cycle of the UV-inducible hyperthermophilic archaeal virus SSV1 by DNA microarrays. Virology 365, 48-59.
6. Gandon, S., and Michalakis, Y. (2002). Local adaptation, evolutionary potential and host-parasite coevolution: interactions between migration, mutation, population size and generation time. J. Evol. Biol. 15,451-462.
7. Greischar, M. A., and Koskella, B. (2007). A synthesis of experimental work on parasite local adaptation. Ecol. Lett. 10, 418-434.
8. Grogan, D. W. (1989). Phenotypic characterization of the archaebacterial genus Sulfolobus: comparison of five wild-type strains. J. Bacteriol. 171,6710-6719.
9. Grogan, D. W., Ozarzak, M. A., and Bernander, R. (2008). Variation in gene content among geographically diverse Sulfolobus isolates. Environ. Microbiol. 10, 137-146.
10. Held, N. L., and Whitaker, R. J. (2009). Viral biogeography revealed by signatures in Sulfolobus islandicus genomes. Environ. Microbiol. 11, 457-466.
11. Horvath, P., and Barrangou, R. (2010). CRISPR/Cas, the immune system of bacteria and archaea. Science 327, 167-170.
12. Huber, H., and Stetter, K. O. (2001). "Family Sulfolobaceae", in Bergey's Manual of Systematic Bacteriology, 2nd Edn., Vol. 1, eds D. Boone, R. Castenholz, and G. Garrity (New York, NY: Springer-Verlag), 198.
13. Kawarabayasi, Y., Hino, Y., Horikawa, H., Jin-No, K., Takahashi, M., Sekine, M., Baba, S.-I., Ankai, A., Kosugi, H., Hosoyama, A., Fukui, S., Nagai, Y., Nishijima, K., Otsuka, R., Nakazawa, H., Takamiya, M., Kato, Y., Yoshizawa, T., Tanaka, T., Kudoh, Y., Yamazaki, J., Kushida, N., Oguchi, A., Aoki, K.-I., Masuda, S., Yanagii, M., Nishimura, M., Yamagishi, A., Oshima, T., and Kikuchi, H. (2001). Complete genome sequence of an Aerobic Thermoacidophilic Crenarchaeon, Sulfolobus tokodaii strain7. DNA Res. 8, 123-140.
14. Kawecki, T. J., and Ebert, D. (2004). Conceptual issues in local adaptation. Ecol. Lett. 7, 1225-1241.
15. Keeling, P. J., Klenk, H. P., Singh, R. K., Schenk, M. E., Sensen, C. W., Zillig, W., and Doolittle, W. F. (1998). Sulfolobus islandicus plasmids pRN1 and pRN2 share distant but common evolutionary ancestry. Extremophiles2, 391-393.
16. Kurosawa, N., Itoh, Y H., Iwai, T., Sugai, A., Uda, I., Kimura, N., Horiuchi, T., and Itoh, T. (1998). Sulfurisphaera ohwakuensis gen. nov., sp. nov., a novel extremely thermophilic acidophile of the order Sulfolobales. Int. J. Syst. Bacteriol. 48(Pt 2), 451-456.
17. Labrie, S. J., Samson, J. E., and Moineau, S. (2010). Bacteriophage resistance mechanisms. Nat. Rev. Microbiol. 8,317-327.
18. Martin, A., Yeats, S., Janekovic, D., Reiter, W. D., Aicher, W., and Zillig, W. (1984). SAV 1, a temperate u.v.-inducible DNA virus-like particle from the archaebacterium Sulfolobus acidocaldarius isolate B12.EMBOJ. 3,2165-2168.
19. Palm, P., Schleper, C., Grampp, B., Yeats, S., McWilliam, P., Reiter, W. D., and Zillig, W. (1991). Complete nucleotide sequence of the virus SSV1 of the archaebacterium Sulfolobus shibatae. Virology 185, 242-250.
20. Peng, X. (2008). Evidence for the horizontal transfer of an integrase gene from a fusellovirus to a pRN-like plasmid within a single strain of Sulfolobus and the implications for plasmid survival. Microbiology 154, 383-391.
21. Prangishvili, D., Arnold, H. P., Gotz, D., Ziese, U., Holz, I., Kristjansson, J. K., and Zillig, W. (1999). A novel virus family, the Rudiviridae: structure, virus-host interactions and genome variability of the sulfolobus viruses SIRV1 and SIRV2. Genetics 152, 1387-1396.
22. Prangishvili, D., Forterre, P., and Garrett, R. A. (2006). Viruses of the Archaea: a unifying view. Nat. Rev. Microbiol. 4, 837-848.
23. Purschke, W. G., and Schafer, G. (2001). Independent replication of the plasmids pRN1 and pRN2 in the archaeon Sulfolobus islandicus. FEMS Microbiol. Lett. 200, 97-102.
24. Redder, P., Peng, X., Brugger, K., Shah, S. A., Roesch, F., Greve, B., She, Q., Schleper, C., Forterre, P., Garrett, R. A., and Prangishvili, D. (2009). Four newly isolated fuselloviruses from extreme geothermal environments reveal unusual morphologies and a possible interviral recombination mechanism. Environ. Microbiol. 11,2849-2862.
25. Reno, M. L., Held, N. L., Fields, C. J., Burke, P. V., and Whitaker, R. J. (2009). Biogeography of the Sulfolobus islandicus pangenome. Proc. Natl. Acad. Sci. U.S.A. 106, 8605-8610.
26. Schleper, C., Kubo, K., and Zillig, W. (1992). The particle SSV1 from the extremely thermophilic archaeon Sulfolobus is a virus: demonstration of infectivity and of transfection with viral DNA. Proc. Natl. Acad. Sci. U.S.A. 89, 7645-7649.
27. She, Q., Singh, R. K., Confalonieri, F., Zivanovic, Y., Allard, G., Awayez, M. J., Chan-Weiher, C. C., Clausen, I. G., Curtis, B. A., De Moors, A., Erauso, G., Fletcher, C., Gordon, P. M., Heikamp-De Jong, I., Jeffries, A. C., Kozera, C. J., Medina, N., Peng, X., Thi-Ngoc, H. P., Redder, P., Schenk, M. E., Theriault, C., Tolstrup, N., Charlebois, R. L., Doolittle, W. F., Duguet, M., Gaasterland, T., Garrett, R. A., Ragan, M. A., Sensen, C. W., and Van Der Oost, J. (2001). The complete genome of the crenarchaeon Sulfolobus solfataricus P2. Proc. Natl. Acad. Sci. U.S.A. 98, 7835-7840.
28. Snyder, J. C., Wiedenheft, B., Lavin, M., Roberto, F. F., Spuhler, J., Ortmann, A. C., Douglas, T., and Young, M. (2007). Virus movement maintains local virus population diversity. Proc. Natl. Acad. Sci. U.S.A. 104, 19102-19107.
29. Stedman, K. M. (2008). "The fuselloviruses of Archaea," in Encyclopedia of Virology, 3rd Edn., eds B. W. J. Mahy and M. H. V Van Regenmortel (Oxford: Elsevier), 296-300.
30. Stedman, K. M., Clore, A., and Combet-Blanc, Y (2006). Bio-geographical Diversity of Archaeal Viruses. Cambridge: Cambridge University Press.
31. Stedman, K. M., Schleper, C., Rumpf, E., and Zillig, W. (1999). Genetic requirements for the function of the archaeal virus SSV1 in Sulfolobus solfataricus: construction and testing of viral shuttle vectors. Genetics 152, 1397-1405.
32. Stedman, K. M., She, Q., Phan, H., Arnold, H. P., Holz, I., Garrett, R. A., and Zillig, W. (2003). Relationships between fuselloviruses infecting the extremely thermophilic archaeon Sulfolobus: SSV1 and SSV2. Res. Microbiol. 154, 295-302.
33. Suzuki, T., Iwasaki, T., Uzawa, T., Hara, K., Nemoto, N., Kon, T., Ueki, T., Yamagishi, A., and Oshima, T. (2002). Sulfolobus tokodaii sp. nov. (f. Sulfolobus sp. strain 7), a new member of the genus Sulfolobus isolated from Beppu Hot Springs, Japan. Extremophiles 6, 39-44.
34. Whitaker, R. J., Grogan, D. W., and Taylor, J. W. (2003). Geographic barriers isolate endemic populations of hyperthermophilic archaea. Science 301, 976-978.
35. Wiedenheft, B., Stedman, K., Roberto, E, Willits, D., Gleske, A. K., Zoeller, L., Snyder, J., Douglas, T., and Young, M. (2004). Comparative genomic analysis of hyperthermophilic archaeal Fuselloviridae viruses.J. Virol. 78, 1954-1961.
36. Yeats, S., McWilliam, P., and Zillig, W. (1982). A plasmid in the archae-bacterium Sulfolobus acidocaldarius. EMBOJ. 1, 1035-1038.
37. Zillig, W., Arnold, H. P., Holz, I., Prangishvili, D., Schweier, A., Stedman, K., She, Q., Phan, H., Garrett, R., and Kristjansson, J. K. (1998). Genetic elements in the extremely thermophilic archaeon Sulfolobus. Extremophiles 2, 131-140.
38. Zillig, W., Kletzin, A., Schleper, C., Holz, I., Janekovic, D., Hain, J., Lanzendoerfer, M., and Kristjansson, J. K. (1994). Screening for Sulfolobales, their plasmids and their viruses in Icelandic sol-fataras. Syst. Appl. Microbiol. 16, 609-628.