Genetic requirements for the function of the archaeal virus SSV1 in Sulfolobus solfataricus: Construction and testing of viral shuttle vectors

Genetics

Volumn 152, Issue 4, 1999, Pages 1397-1405

  Stedman, Kenneth M ^a   Schleper, Christa ^a,b   Rumpf, Evelyn ^a   Zillig, Wolfram ^a  

^a MAX PLANCK INSTITUTE OF BIOCHEMISTRY   (Germany)

^b DARMSTADT UNIVERSITY OF TECHNOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS VECTOR;

ARTICLE; BACTERIAL GROWTH; ESCHERICHIA COLI; GENE DISRUPTION; GENE INSERTION; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; SHUTTLE VECTOR; SULFOLOBUS SOLFATARICUS; ULTRAVIOLET IRRADIATION; VIRAL GENETICS; VIRUS GENOME; VIRUS MUTATION; VIRUS RECOMBINANT;

CLONING, MOLECULAR; DNA, VIRAL; ESCHERICHIA COLI; FUSELLOVIRIDAE; GENETIC VECTORS; OPEN READING FRAMES; SPECIES SPECIFICITY; SULFOLOBUS; ULTRAVIOLET RAYS; VIRUS REPLICATION;

ACTINOBACTERIA (CLASS); ARBOVIRUS; ARCHAEA; BACTERIA (MICROORGANISMS); CRENARCHAEOTA; ESCHERICHIA COLI; INVERTEBRATA; SULFOLOBUS SOLFACTARICUS; SULFOLOBUS SOLFATARICUS; UNCULTURED ACTINOMYCETE;

EID: 0345583679     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (41)

1. AAGAARD, C., I. LEVIEV, R. N. ARAVALLI, P. FORTERRE, D. PRIEUR el al., 1996 General vectors for archaeal hyperthermophiles: strategies based on a mobile intron and a plasmid. FEMS Microbiol. Rev. 18: 93-104.
2. ARAVALLI, R. N., and R. A. GARRETT, 1997 Shuttle vectors for hyperthermophilic archaea. Extremophiles 1: 183-191.
3. BIRNBOIM, H. C., and J. DOLY, 1979 A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7: 1513-1523.
4. BROCK, T. D., K. M. BROCK, R. T. BELLY and R. L. WEISS, 1972 Sulfolobus: a new genus of sulfur-oxidizing bacteria living at low pH and high temperature. Arch. Mikrobiol. 84: 54-68.
5. CANNIO, R., P. CONTURSI, M. ROSSI and S. BARTOLUCCI, 1988 An autonomously replicating transforming vector for Sulfolobus solfalaricus. J. Bacteriol. 180: 3237-3240.
6. D'HALLUIN, J. C., 1995 Virus assembly. Curr. Top. Microbiol. Immunol. 199: 47-66.
7. EDGELL, D., and W. DOOLITTLE, 1997 Archaea and the origin (s) of DNA replication proteins. Cell 89: 995-998.
8. ELFERINK, M. G., C. SCHLEPER and W. ZILLIG, 1996 Transformation of the extremely thermoacidophilic archaeon Sulfolobus solfataricus a self-spreading vector. FEMS Microbiol. Lett. 137: 31-35.
9. ERAUSO, G., S. MARSIN, N. BENBOUZID-ROLLET, M. BAUCHER, T. BARBEYRON et al., 1996 Sequence of plasmid pGT5 from the archaeon Pyrococcus abyssi: evidence for rolling-circle replication in a hyperthermophile. J. Bacteriol. 178: 3232-3237.
10. GROGAN, D., P. PALM and W. ZILLIG, 1990 Isolate B12, which harbors a virus-like element, represents a new species of lhe archaebacterial genus Sulfolobus, Sulfolobus shibatae, sp. nov. Arch. Microbiol. 154: 594-599.
11. HAIN, J., W. D. REITER, U. HÜDEPOHL and W. ZILLIG, 1992 Elements of an archaeal promoter defined by mutational analysis. Nucleic Acids Res. 20: 5423-5428.
12. ISHINO, Y., K. KOMORI, I. K. CANN and Y. KOGA, 1998 A novel DNA polymerase family found in Archaea. J. Bacteriol. 180: 2232-2236.
13. KEELING, P. J., H. P. KLENK, R. K. SINGH, O. FEELEY, C. SCHLEPER et al., 1996 Complete nucleotide sequence of the Sulfolobus islandicus multicopy plasmid pRN1. Plasmid 35: 141-144.
14. KOONIN, E., 1992 Archaebacterial virus SSV1 encodes a putative DnaA-like protein. Nucleic Acids Res. 20: 1143.
15. KRAFT, R., J. TARDIFF, K. S. KRAUTER and L. A. LEINWAND, 1988 Using mini-prep plasmid DNA for sequencing double stranded templates with Sequenase. Biotechniques 6: 544-546, 549.
16. MARSIN, S., and P. FORTERRE, 1998 A rolling circle replication initiator protein with a nucleotidyl-transferase activity encoded by the plasmid pGT5 from the hyperthermophilic archaeon Pyrococcus abyssi. Mol. Microbiol. 27: 1183-1192.
17. MARTIN, A., S. YEATS, D. JANEKOVIC, W. D. REITER, W. AICHER et al., 1984 SAV-1 a temperate UV inducible DNA virus-like particle from the archaebacterium Sulfolobus acidocaldarius isolate B12. EMBO J. 3: 2165-2168.
18. MUSKHELISHVILI, G., 1994 The archaeal SSV integrase promotes intermolecular excisive recombination in vitro. Syst. Appl. Microbiol. 16: 605-608.
19. MUSKHELISHVILI, G., P. PALM and W. ZILLIG, 1993 SSV1-encoded site-specific recombination system in Sulfolobus shibatae. Mol. Gen. Genet. 237: 334-342.
20. OSTERLUND, M., H. LUTHMAN, S. V. NILSSON and G. MAGNUSSON, 1982 Ethidium-bromide-inhibited restriction endonucleases cleave one strand of circular DNA. Gene 20: 121-125.
21. PALM, P., C. SCHLEPER, B. GRAMPP, S. YEATS, P. MCWILLIAM et al., 1991 Complete nucleotide sequence of the virus SSV1 of the archaebacterium Sulfolobus shibatae. Virology 185: 242-250.
22. PARKER, R. C., R. M. WATSON and J. VINOGRAD, 1977 Mapping of closed circular DNAs by cleavage with restriction endonucleases and calibration by agarose gel electrophoresis. Proc. Natl. Acad. Sci. USA 74: 851-855.
23. PFEIFER, F., and U. BLASEIO, 1990 Transposition burst of the 1SH27 insertion element family in Halobarterium halobium. Nucleic Acids Res. 18: 6921-6925.
24. PRANGISHVILI, D., R. P. VASHAKIDZE, M. G. CHELIDZE and I. Y. GABRIADZE, 1985 A restriction endonuclease Sua 1 from the thermoacidophilic archaebacterium Sulfolobus acidocaldorius. FEBS Lett. 192: 57-60.
25. REITER, W. D., and P. PALM, 1990 Identification and characterization of a defective SSV1 genome integrated into a tRNA gene in the archaebacterium Sulfolobus sp. B12. Mol. Gen. Genet. 221: 65-71.
26. REITER, W. D., P. PALM, A. HENSCHEN, F. LOTTSPEICH, W. ZILLIG et al., 1987a Identification and characterization of the genes encoding three structural proteins of the Sulfolobus virus-like particle SSV1. Mol. Gen. Genet. 206: 144-153.
27. REITER, W. D., P. PALM, S. YEATS and W. ZILLIG, 1987b Gene expression in archaebacteria: physical mapping of constitutive and UV-inducible transcripts from the Sulfolobus virus-like particle SSV1. Mol. Gen. Genet. 209: 270-275.
28. REITER, W. D., P. PALM and W. ZILLIG, 1988 Transcription termination in the archaebacterium Sulfolobus: signal structures and linkage to transcription initiation. Nucleic Acids Res. 16: 2445-2459.
29. RUSSEL, M., N. LINDEROTH and A. SALI, 1997 Filamentous phage assembly: variation on a protein export theme. Gene 192: 23-32.
30. SAMBROOK, J., E. F. FRITSCH and T. MANIATIS, 1989 Molecular Cloning: A laboratory Manual, Ed. 2. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
31. SCHLEPER, C., K. KUBO and W. ZILLIG, 1992 The particle SSV1 from the extremely thermophilic archaeon Sulfolobus is a virus: demonstration of infectivity and of transfection with viral DNA. Proc. Natl. Acad. Sci. USA 89: 7645-7649.
32. SCHLEPER, C., R. RODER, T. SINGER and W. ZILLIG, 1994 An insertion element of the extremely thermophilic archaeon Sulfolobus solfataricus transposes into the endogenous beta-galactosidase gene. Mol. Gen. Genet. 243: 91-96.
33. SENSEN, C. W., H. P. KLENK, R. K. SINGH, G. ALLARD, C. C. CHAN et al., 1996 Organizational characteristics and information content of an archaeal genome: 156 kb of sequence from Sulfolobus solfataricus P2. Mol. Microbiol. 22: 175-191.
34. SENSEN, C. W., R. L. CHARLEBOIS, C. CHOW, I. G. CLAUSEN, B. CURTIS et al., 1998 Completing the sequence of the Sulfolobus solfataricus P2 genome. Extremophiles 2: 305-312.
35. SHE, Q. X., H. E. PHAN, R. A. GARRETT, S. V. ALBERS, K. M. STEDMAN et al., 1998 Genetic profile of pNOB8 from Sulfolobus - the first conjugative plasmid from an archaeon. Extremophiles 2: 417-425.
36. STOLT, P., and W. ZILLIG, 1995 Archaebacterial bacteriophages, in Encyclopedia of Virology Plus (on CD-ROM), edited by R. WEBSTER and A. GRANOFF. Academic Press, London.
37. WOODCOCK, D. M., P. J. CROWTHER, J. DOHERTY, S. JEFFERSON, E. DECRUZ et al., 1989 Quantitative evaluation of Escherichia coli host strains for tolerance to cytosine methylation in plasmid and phage recombinants. Nucleic Acids Res. 17: 3469-3478.
38. YEATS, S., P. MCWILLIAM and W. ZILLIG, 1982 A plasmid in the archaebacterium Sulfolobus solfataricus. EMBO J. 1: 1035-1038.
39. ZILLIG, W., A. KLETZIN, C. SCHLEPER, I. HOLTZ, D. JANEKOVIC et al., 1994 Screening for Sulfolobales, their plasmids and their viruses in Icelandic solfataras. Syst. Appl. Microbiol. 16: 609-628.
40. ZILLIG, W., D. PRANGISHVILI, C. SCHLEPER, M. ELFERINK, I. HOLZ et al., 1996 Viruses, plasmids and other genetic elements of thermophilic and hyperthermophilic Archaea. FEMS Microbiol. Rev. 18: 225-236.
41. ZILLIG, W., H. P. ARNOLD, I. HOLZ, D. PRANGISHVILI, A. SCHWEIER et al., 1998 Genetic elements in the extremely thermophilic archaeon Sulfolobus. Extremophiles 2: 131-140.