Correcting susceptibility-induced distortion in diffusion-weighted MRI using constrained nonrigid registration

2012 Conference Handbook - Asia-Pacific Signal and Information Processing Association Annual Summit and Conference, APSIPA ASC 2012

Volumn , Issue , 2012, Pages

  Bhushan, Chitresh ^a   Haldar, Justin P ^a   Joshi, Anand A ^a   Leahy, Richard M ^a  

^a UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADDITIONAL DATUM; ANATOMICAL IMAGES; BRAIN REGIONS; DIFFUSION MRIS; DIFFUSION-WEIGHTED MAGNETIC RESONANCE IMAGING; DIFFUSION-WEIGHTED MRI; ECHO PLANAR IMAGING; EXPERIMENTAL DATUM; GEOMETRIC DISTORTION; HIGH RESOLUTION; HUMAN HEAD; INHOMOGENEITIES; MRI SCAN; NONRIGID REGISTRATION; PHYSICS-BASED INFORMATION; PULSE SEQUENCE; SPATIAL REGULARIZATIONS;

BRAIN; DATA PROCESSING; MAGNETIC RESONANCE IMAGING;

DIFFUSION;

EID: 84874434482     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (37)

1. D. K. Jones, Diffusion MRI: Theory, Methods, and Applications. Oxford University Press, Inc., 2011.
2. H. Johansen-Berg and T. E. Behrens, Diffusion MRI: from Quantitative Measurement to in-vivo Neuroanatomy. Academic Press, 2009.
3. K. Kantarci, R. Avula, M. Senjem, A. Samikoglu, B. Zhang, S. Weigand, S. Przybelski, H. Edmonson, P. Vemuri, D. Knopman, T. Ferman, B. Boeve, R. Petersen, and C. Jack, "Dementia with Lewy bodies and Alzheimer disease: Neurodegenerative patterns characterized by DTI," Neurology, vol. 74, no. 22, pp. 1814-1821, 2010.
4. J. L. R. Andersson and S. Skare, "Image distortion and its correction in diffusion MRI," in Diffusion MRI: Theory, Methods, and Applications (D. K. Jones, ed.), 2010.
5. 0 field variations," Magnetic Resonance in Medicine, vol. 34, no. 1, pp. 65-73, 1995.
6. D. K. Jones and M. Cercignani, "Twenty-five pitfalls in the analysis of diffusion MRI data," NMR in Biomedicine, vol. 23, no. 7, pp. 803-820, 2010.
7. C. Studholme, R. T. Constable, and J. S. Duncan, "Accurate alignment of functional EPI data to anatomical MRI using a physics-based distortion model," IEEE Transactions on Medical Imaging, vol. 19, pp. 1115 -1127, nov. 2000.
8. M. O. Irfanoglu, L. Walker, J. Sarlls, S. Marenco, and C. Pierpaoli, "Effects of image distortions originating from susceptibility variations and concomitant fields on diffusion MRI tractography results," NeuroImage, vol. 61, no. 1, pp. 275-288, 2012.
9. K. V. Embleton, H. A. Haroon, D. M. Morris, M. A. L. Ralph, and G. J. Parker, "Distortion correction for diffusion-weighted MRI tractography and fMRI in the temporal lobes," Human Brain Mapping, vol. 31, no. 10, pp. 1570-1587, 2010.
10. R. Weisskoff and T. Davis, "Correcting gross distortion on echo planar images," in Proceedings of the SMRM 11th Annual Meeting Berlin, p. 4515, 1992.
11. H. Zeng and R. T. Constable, "Image distortion correction in EPI: Comparison of field mapping with point spread function mapping," Magnetic Resonance in Medicine, vol. 48, no. 1, pp. 137-146, 2002.
12. R. Bowtell, D. McIntyre, M. Commandre, P. Glover, and P. Mansfield, "Correction of geometric distortion in echo planar images," in Proceedings of the Society of Magnetic Resonance, San Francisco, 1994.
13. J. L. Andersson, S. Skare, and J. Ashburner, "How to correct susceptibility distortions in spin-echo echo-planar images: application to diffusion tensor imaging," NeuroImage, vol. 20, no. 2, pp. 870-888, 2003.
14. J. Kybic, P. Thevenaz, A. Nirkko, and M. Unser, "Unwarping of unidirectionally distorted EPI images," IEEE Transactions on Medical Imaging, vol. 19, pp. 80-93, feb. 2000.
15. M. Irfanoglu, L. Walker, S. Sammet, C. Pierpaoli, and R. Machiraju,"Susceptibility distortion correction for echo planar images with non-uniform b-spline grid sampling: A diffusion tensor image study," in Medical Image Computing and Computer-Assisted Intervention 2011 (G. Fichtinger, A. Martel, and T. Peters, eds.), vol. 6892 of Lecture Notes in Computer Science, pp. 174-181, Springer Berlin / Heidelberg, 2011.
16. R. Tao, P. Fletcher, S. Gerber, and R. Whitaker, "A variational image-based approach to the correction of susceptibility artifacts in the alignment of diffusion weighted and structural MRI," in Information Processing in Medical Imaging (J. Prince, D. Pham, and K. Myers, eds.), vol. 5636 of Lecture Notes in Computer Science, pp. 664-675, Springer Berlin / Heidelberg, 2009.
17. 0 susceptibility induced distortion in diffusion-weighted images using large-deformation diffeomorphic metric mapping," Magnetic Resonance Imaging, vol. 26, no. 9, pp. 1294-1302, 2008.
18. X.-F. Yao and Z.-J. Song, "Deformable registration for geometric distortion correction of diffusion tensor imaging," in Computer Analysis of Images and Patterns (P. Real, D. Diaz-Pernil, H. Molina-Abril, A. Berciano, and W. Kropatsch, eds.), vol. 6854 of Lecture Notes in Computer Science, pp. 545-553, Springer Berlin / Heidelberg, 2011.
19. M. Wu, L.-C. Chang, L. Walker, H. Lemaitre, A. Barnett, S. Marenco, and C. Pierpaoli, "Comparison of EPI distortion correction methods in diffusion tensor MRI using a novel framework," in Medical Image Computing and Computer-Assisted Intervention - MICCAI 2008 (D. Metaxas, L. Axel, G. Fichtinger, and G. Székely, eds.), vol. 5242 of Lecture Notes in Computer Science, pp. 321-329, Springer Berlin / Heidelberg, 2008.
20. P. Viola and W. M. Wells, "Alignment by maximization of mutual information," International Journal of Computer Vision, vol. 24, pp. 137-154, 1997. 10.1023/A:1007958904918.
21. F. Maes, A. Collignon, D. Vandermeulen, G. Marchal, and P. Suetens, "Multimodality image registration by maximization of mutual information," Medical Imaging, IEEE Transactions on, vol. 16, pp. 187-198, april 1997.
22. C. Studholme, D. Hill, and D. J. Hawkes, "An overlap invariant entropy measure of 3D medical image alignment," Pattern Recognition, vol. 32, no. 1, pp. 71-86, 1999.
23. M. Holden, "A review of geometric transformations for nonrigid body registration," IEEE Transactions on Medical Imaging, vol. 27, pp. 111-128, jan. 2008.
24. D. Rueckert, L. Sonoda, C. Hayes, D. Hill, M. Leach, and D. Hawkes, "Nonrigid registration using free-form deformations: application to breast mr images," IEEE Transactions on Medical Imaging, vol. 18, pp. 712-721, aug. 1999.
25. R. H. Bartels, J. C. Beatty, and B. A. Barsky, An Introduction to Splines for Use in Computer Graphics & Geometric Modeling. San Francisco, CA, USA: Morgan Kaufmann Publishers Inc., 1987.
26. J. P. Pluim, J. A. Maintz, and M. A. Viergever, "Mutual-information- based registration of medical images: a survey," IEEE Transactions on Medical Imaging, vol. 22, pp. 986-1004, aug. 2003.
27. D. Rueckert, M. J. Clarkson, D. L. G. Hill, and D. J. Hawkes, "Non-rigid registration using higher-order mutual information," vol. 3979, pp. 438-447, SPIE, 2000.
28. C. Studholme, D. Hill, and D. Hawkes,"Incorporating connected region labelling into automated image registration using mutual information," in Proceedings of the Workshop on Mathematical Methods in Biomedical Image Analysis, 1996, pp. 23-31, jun 1996.
29. F. Bookstein, "Principal warps: thin-plate splines and the decomposition of deformations," IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 11, pp. 567-585, jun 1989.
30. R. O. Duda, P. E. Hart, and D. G. Stork, Pattern Classification, vol. 10. John Wiley and Sons., 2001.
31. P. Thevenaz and M. Unser, "Optimization of mutual information for multiresolution image registration," IEEE Transactions on Image Processing, vol. 9, pp. 2083-2099, dec 2000.
32. R. Xu, Y.-W. Chen, S.-Y. Tang, S. Morikawa, and Y. Kurumi, "Parzen-window based normalized mutual information for medical image registration," IEICE Transactions on Information and Systems, vol. E91.D, no. 1, pp. 132-144, 2008.
33. J. M. Lane and R. F. Riesenfeld, "A theoretical development for the computer generation and display of piecewise polynomial surfaces," IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. PAMI-2, pp. 35-46, jan. 1980.
34. J. P. Pluim, J. A. Maintz, and M. A. Viergever, "Interpolation artefacts in mutual information-based image registration," Computer Vision and Image Understanding, vol. 77, no. 2, pp. 211-232, 2000.
35. J. Tsao, "Interpolation artifacts in multimodality image registration based on maximization of mutual information," IEEE Transactions on Medical Imaging, vol. 22, no. 7, pp. 854-864, 2003.
36. E. Schneider and G. Glover, "Rapid in vivo proton shimming," Magnetic Resonance in Medicine, vol. 18, no. 2, pp. 335-347, 1991.
37. D. Hernando, P. Kellman, J. P. Haldar, and Z.-P. Liang,"Robust water/fat separation in the presence of large field inhomogeneities using a graph cut algorithm," Magnetic Resonance in Medicine, vol. 63, no. 1, pp. 79-90, 2010.