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Volumn 53, Issue 5, 2013, Pages 410-419

Anoxybacillus kaynarcensis sp. nov., a moderately thermophilic, xylanase producing bacterium

Author keywords

Anoxybacillus kaynarcensis; Thermophilic; Xylanase

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; ENDO 1,4 BETA XYLANASE; RNA 16S;

EID: 84874373541     PISSN: 0233111X     EISSN: 15214028     Source Type: Journal    
DOI: 10.1002/jobm.201100638     Document Type: Article
Times cited : (24)

References (43)
  • 1
    • 0034525524 scopus 로고    scopus 로고
    • Anoxybacillus pushchinensis gen. nov., sp. nov., a novel anaerobic, alkaliphilic, moderately thermophilic bacterium from manure, and description of Anoxybacillus flavithermus comb. nov
    • Pikuta, E., Lysenko, A., Chuvilskaya N., Mendrock, U., et al., 2000. Anoxybacillus pushchinensis gen. nov., sp. nov., a novel anaerobic, alkaliphilic, moderately thermophilic bacterium from manure, and description of Anoxybacillus flavithermus comb. nov. Int. J. Syst. Evol. Microbiol., 50, 2109-2117.
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 2109-2117
    • Pikuta, E.1    Lysenko, A.2    Chuvilskaya, N.3    Mendrock, U.4
  • 3
    • 0035231776 scopus 로고    scopus 로고
    • Taxonomy of Campylobacter, Arcobacter, Helicobacter and related bacteria: current status, future prospects and immediate concerns
    • On, S.L., 2001. Taxonomy of Campylobacter, Arcobacter, Helicobacter and related bacteria: current status, future prospects and immediate concerns. Symp. Ser. Soc. Appl. Microbiol., 30, 1-5.
    • (2001) Symp. Ser. Soc. Appl. Microbiol. , vol.30 , pp. 1-5
    • On, S.L.1
  • 4
    • 1142297445 scopus 로고    scopus 로고
    • gyrB as a phylogenetic discriminator for members of the Bacillus anthracis-cereus-thuringiensis group
    • La Duc, M.T., Satomi, M., Agata, N., Venkateswaran, K., 2004. gyrB as a phylogenetic discriminator for members of the Bacillus anthracis-cereus-thuringiensis group. J. Microbiol. Methods, 56, 383-394.
    • (2004) J. Microbiol. Methods , vol.56 , pp. 383-394
    • La Duc, M.T.1    Satomi, M.2    Agata, N.3    Venkateswaran, K.4
  • 5
    • 0345328128 scopus 로고    scopus 로고
    • Gene sequences useful for predicting relatedness of whole genomes in bacteria
    • Zeigler, D.R., 2003. Gene sequences useful for predicting relatedness of whole genomes in bacteria. Int. J. Syst. Evol. Microbiol., 53, 1893-1900.
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 1893-1900
    • Zeigler, D.R.1
  • 6
    • 3042700320 scopus 로고    scopus 로고
    • Use of rpoB gene analysis for identification of nitrogenfixing Paenibacillus species as an alternative to the 16S rRNA gene
    • Da Mota, F.F., Gomes, E.A., Paiva, E., Rosado, A.S., Seldin, L., 2004. Use of rpoB gene analysis for identification of nitrogenfixing Paenibacillus species as an alternative to the 16S rRNA gene. Lett. Appl. Microbiol., 39, 34-40.
    • (2004) Lett. Appl. Microbiol. , vol.39 , pp. 34-40
    • Da Mota, F.F.1    Gomes, E.A.2    Paiva, E.3    Rosado, A.S.4    Seldin, L.5
  • 7
    • 80955158025 scopus 로고    scopus 로고
    • Use of rpoB Sequences and rep-PCR for Phylogenetic study of Anoxybacillus species
    • Inan, K., Bektas, Y., Canakci, S., Belduz, A.O., 2011. Use of rpoB Sequences and rep-PCR for Phylogenetic study of Anoxybacillus species. J. Microbiol., 49, 782-790.
    • (2011) J. Microbiol. , vol.49 , pp. 782-790
    • Inan, K.1    Bektas, Y.2    Canakci, S.3    Belduz, A.O.4
  • 8
    • 0027955374 scopus 로고
    • The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA analysis
    • Rainey, F.A., Fritze, D., Stackebrandt, E., 1994. The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA analysis. FEMS Microbiol. Lett., 115, 205-212.
    • (1994) FEMS Microbiol. Lett. , vol.115 , pp. 205-212
    • Rainey, F.A.1    Fritze, D.2    Stackebrandt, E.3
  • 9
    • 0035709113 scopus 로고    scopus 로고
    • A polyphasic taxonomic study of thermophilic bacilli from shallow, marine vents
    • Maugeri, T.I., Gugliandolo, C., Caccamo, D., Stackebrandt, E., 2001. A polyphasic taxonomic study of thermophilic bacilli from shallow, marine vents. Sys. Appl. Microbiol., 24, 572-587.
    • (2001) Sys. Appl. Microbiol. , vol.24 , pp. 572-587
    • Maugeri, T.I.1    Gugliandolo, C.2    Caccamo, D.3    Stackebrandt, E.4
  • 10
    • 0037411739 scopus 로고    scopus 로고
    • Developments in industrially important thermostable enzymes: a review
    • Haki, G.D., Rakshit, S.K., 2003. Developments in industrially important thermostable enzymes: a review. Bioresour. Technol. 89, 17-34.
    • (2003) Bioresour. Technol. , vol.89 , pp. 17-34
    • Haki, G.D.1    Rakshit, S.K.2
  • 11
    • 0020980077 scopus 로고
    • Advantages of using thermophiles in biotechnological processes: expectations and reality
    • Sonnleitner, B., Fiechter, A., 1983. Advantages of using thermophiles in biotechnological processes: expectations and reality. Trends Biotechnol., 1, 74-80.
    • (1983) Trends Biotechnol. , vol.1 , pp. 74-80
    • Sonnleitner, B.1    Fiechter, A.2
  • 12
    • 0000919838 scopus 로고
    • An improved technique for staining red halophilic bacteria
    • Dussault, H.P., 1955. An improved technique for staining red halophilic bacteria. J. Bacteriol., 70, 484-485.
    • (1955) J. Bacteriol. , vol.70 , pp. 484-485
    • Dussault, H.P.1
  • 13
    • 0028824739 scopus 로고
    • Efficacy of the Ryu nonstaining KOH technique for rapidly determining Gram reactions of food-borne and waterborne bacteria and yeasts
    • Powers, E.M., 1995. Efficacy of the Ryu nonstaining KOH technique for rapidly determining Gram reactions of food-borne and waterborne bacteria and yeasts. Appl. Environ. Microbiol., 61, 3756-3758.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 3756-3758
    • Powers, E.M.1
  • 14
    • 33751205027 scopus 로고    scopus 로고
    • Brevibacillus ginsengisoli sp. nov., a denitrifying bacterium isolated from soil of a ginseng field
    • Baek, S.H., Im, W.T., Oh, H.W., Lee, J.S., et al., 2006. Brevibacillus ginsengisoli sp. nov., a denitrifying bacterium isolated from soil of a ginseng field. Int. J. Syst. Evol. Microbiol., 56, 2665-2669.
    • (2006) Int. J. Syst. Evol. Microbiol. , vol.56 , pp. 2665-2669
    • Baek, S.H.1    Im, W.T.2    Oh, H.W.3    Lee, J.S.4
  • 15
    • 0000612080 scopus 로고
    • Phenotypic characterization
    • Gerhardt, P., Murray, R.G.E., Wood, W.A., Krieg, N.R., Washington, DC: American Society for Microbiology
    • Smibert, R.M., Krieg, N.R., 1994. Phenotypic characterization. In: Gerhardt, P., Murray, R.G.E., Wood, W.A., Krieg, N.R., (eds.) Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology, pp. 607-654.
    • (1994) Methods for General and Molecular Bacteriology , pp. 607-654
    • Smibert, R.M.1    Krieg, N.R.2
  • 17
    • 0029949236 scopus 로고    scopus 로고
    • Isolation of Thermus strains from hot compost (60 to 80°C)
    • Beffa, T., Blanc, M., Lyon, P.F., Vogt, G., et al., 1996. Isolation of Thermus strains from hot compost (60 to 80°C). Appl. Environ. Microbiol., 62, 1723-1727.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1723-1727
    • Beffa, T.1    Blanc, M.2    Lyon, P.F.3    Vogt, G.4
  • 18
    • 35648991375 scopus 로고    scopus 로고
    • EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequence
    • Chun, J., Lee, J.H., Jung, Y., Kim, M., et al., 2007. EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequence. Int. J. Syst. Evol. Microbiol., 57, 2259-2261.
    • (2007) Int. J. Syst. Evol. Microbiol. , vol.57 , pp. 2259-2261
    • Chun, J.1    Lee, J.H.2    Jung, Y.3    Kim, M.4
  • 19
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall, T.A., 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids. Symp. Ser., 41, 95-98.
    • (1999) Nucleic Acids. Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 20
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., Higgins, D.G., 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 24, 4876-4882.
    • (1997) Nucleic Acids Res. , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 21
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M., 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol., 16, 111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 22
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou, N., Nei, M., 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 23
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: a maximum likelihood approach
    • Felsenstein, J., 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol., 17, 368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 24
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: minimum change for a specific tree topology
    • Fitch, W.M., 1971. Toward defining the course of evolution: minimum change for a specific tree topology. Syst. Zool., 20, 406-416.
    • (1971) Syst. Zool. , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 25
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein, J., 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 26
    • 34547781750 scopus 로고    scopus 로고
    • MEG A4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura, K., Dudley, J., Nei, M., Kumar, S., 2007. MEG A4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol., 24, 1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 27
    • 84878199057 scopus 로고    scopus 로고
    • PAUP*: Phylogenetic analysis using parsimony (* and other methods), version 4. Sunderland, MA: Sinauer Associates
    • Swofford, D.L., 2002. PAUP*: Phylogenetic analysis using parsimony (* and other methods), version 4. Sunderland, MA: Sinauer Associates.
    • (2002)
    • Swofford, D.L.1
  • 28
    • 0033860832 scopus 로고    scopus 로고
    • rpoB-Based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity
    • Dahllöf, I., Baillie, H., Kjelleberg, S., 2000. rpoB-Based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity. Appl. Environ. Microbiol., 66, 3376-3380.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3376-3380
    • Dahllöf, I.1    Baillie, H.2    Kjelleberg, S.3
  • 29
    • 0023752959 scopus 로고
    • Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradorhizobium japonicum
    • Kuykendall, L.D., Roy, M.A., O'Neill, J.J., Devine, T.E., 1988. Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradorhizobium japonicum. Int. J. Syst. Bacteriol., 38, 358-361.
    • (1988) Int. J. Syst. Bacteriol. , vol.38 , pp. 358-361
    • Kuykendall, L.D.1    Roy, M.A.2    O'Neill, J.J.3    Devine, T.E.4
  • 30
    • 0019982011 scopus 로고
    • Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxyl acids
    • Miller, L.T., 1982. Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxyl acids. J. Clin. Microbiol., 16, 584-586.
    • (1982) J. Clin. Microbiol. , vol.16 , pp. 584-586
    • Miller, L.T.1
  • 31
    • 0025324750 scopus 로고
    • A comparative study of the lipid composition of Halobacterium saccharovorum from various sources
    • Tindall, B.J., 1990a. A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst. Appl. Microbiol., 13, 128-130.
    • (1990) Syst. Appl. Microbiol. , vol.13 , pp. 128-130
    • Tindall, B.J.1
  • 32
    • 0025098748 scopus 로고
    • Lipid composition of Halobacterium lacusprofundi
    • Tindall, B.J., 1990b. Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol. Lett., 66, 199-202.
    • (1990) FEMS Microbiol. Lett. , vol.66 , pp. 199-202
    • Tindall, B.J.1
  • 33
    • 85010439719 scopus 로고
    • A procedure for the isolation of deoxyribonucleic acid from microorganisms
    • Marmur, J., 1961. A procedure for the isolation of deoxyribonucleic acid from microorganisms. J. Mol. Biol., 3, 208-218.
    • (1961) J. Mol. Biol. , vol.3 , pp. 208-218
    • Marmur, J.1
  • 34
    • 77956996468 scopus 로고
    • Use of ultraviolet light temprature profile for determination of the guanine plus cytosine content of DNA
    • Mandel, M., Marmur, J., 1968. Use of ultraviolet light temprature profile for determination of the guanine plus cytosine content of DNA. Enzymol., 12, 195-206.
    • (1968) Enzymol. , vol.12 , pp. 195-206
    • Mandel, M.1    Marmur, J.2
  • 35
    • 0014713693 scopus 로고
    • The quantitative measurement of DNA hybridization from renaturation rates
    • De Ley, J., Cattoir, H., Reynaerts, A., 1970. The quantitative measurement of DNA hybridization from renaturation rates. Eur. J. Biochem., 12, 133-142.
    • (1970) Eur. J. Biochem. , vol.12 , pp. 133-142
    • De Ley, J.1    Cattoir, H.2    Reynaerts, A.3
  • 36
    • 0020549589 scopus 로고
    • Studies on the spectrophotometric determination of DNA hybridization from renaturation rates
    • Huβ, V.A.R., Festl, H., Schleifer, K.H., 1983. Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst. Appl. Microbiol., 4, 184-192.
    • (1983) Syst. Appl. Microbiol. , vol.4 , pp. 184-192
    • Huβ, V.A.R.1    Festl, H.2    Schleifer, K.H.3
  • 37
    • 0019037990 scopus 로고    scopus 로고
    • Thermal stability and renaturation of DNA in dimethyl sulphoxide solutions: acceleration of the renaturation rate
    • Escara, J.F., Hutton, J.R., 2007. Thermal stability and renaturation of DNA in dimethyl sulphoxide solutions: acceleration of the renaturation rate. Biopolymers, 19, 1315-1327.
    • (2007) Biopolymers , vol.19 , pp. 1315-1327
    • Escara, J.F.1    Hutton, J.R.2
  • 38
    • 0034023135 scopus 로고    scopus 로고
    • Saccharococcus caldoxylolyticus sp. nov., an obligately thermophilic, xylose-utilizing, endospore forming bacterium
    • Ahmad, S., Scopes, K., Rees, G.N., Patel, B.K.C., 2000. Saccharococcus caldoxylolyticus sp. nov., an obligately thermophilic, xylose-utilizing, endospore forming bacterium. Int. J. Syst. Evol. Microbiol., 50, 517-523.
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 517-523
    • Ahmad, S.1    Scopes, K.2    Rees, G.N.3    Patel, B.K.C.4
  • 39
    • 26444538449 scopus 로고    scopus 로고
    • Anoxybacillus kamchatkensis sp. nov., a novel thermophilic facultative aerobic bacterium with a broad pH optimum from the Geyser vallay, Kamchatka
    • Kevbrin, V.V., Zengler, K., Lysenko, A.M., Wiegel, J., 2005. Anoxybacillus kamchatkensis sp. nov., a novel thermophilic facultative aerobic bacterium with a broad pH optimum from the Geyser vallay, Kamchatka. Extremophiles, 9, 391-398.
    • (2005) Extremophiles , vol.9 , pp. 391-398
    • Kevbrin, V.V.1    Zengler, K.2    Lysenko, A.M.3    Wiegel, J.4
  • 40
    • 33747333106 scopus 로고
    • Use of dinitrosalicyclic acid reagent for determination of reducing sugars
    • Miller, G.L., 1959. Use of dinitrosalicyclic acid reagent for determination of reducing sugars. Anal. Chem., 31, 426-428.
    • (1959) Anal. Chem. , vol.31 , pp. 426-428
    • Miller, G.L.1
  • 41
    • 34548514005 scopus 로고    scopus 로고
    • Evaluation of arabinofuranosidase and xylanase activities of Geobacillus spp. isolated from some hot springs in Turkey
    • Canakci, S., Inan, K., Kacagan, M., Belduz, A.O., 2007. Evaluation of arabinofuranosidase and xylanase activities of Geobacillus spp. isolated from some hot springs in Turkey. J. Microbiol. Biotechnol., 17, 1261-1270.
    • (2007) J. Microbiol. Biotechnol. , vol.17 , pp. 1261-1270
    • Canakci, S.1    Inan, K.2    Kacagan, M.3    Belduz, A.O.4
  • 42
    • 0035989633 scopus 로고    scopus 로고
    • Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology
    • Stackebrandt, E., Frederiksen, W., Garrity, G.M., et al., 2002. Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int. J. Syst. Evol. Microbiol., 52, 1043-1037.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 1043-1037
    • Stackebrandt, E.1    Frederiksen, W.2    Garrity, G.M.3
  • 43
    • 0000770675 scopus 로고
    • International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics
    • Wayne, L.G., Brenner, D.J., Colwell, R.R., Grimon, P.A.D., et al., 1987. International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol., 37, 463-464.
    • (1987) Int. J. Syst. Bacteriol. , vol.37 , pp. 463-464
    • Wayne, L.G.1    Brenner, D.J.2    Colwell, R.R.3    Grimon, P.A.D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.