메뉴 건너뛰기




Volumn 4, Issue 3, 2012, Pages 807-810

Using next-generation DNA sequencing for rapid microsatellite discovery in Mexican leaf-toed geckos (Phyllodactylus tuberculosus)

Author keywords

Evolution; Gecko; Genomics; Pyrosequencing

Indexed keywords


EID: 84874356928     PISSN: 18777252     EISSN: 18777260     Source Type: Journal    
DOI: 10.1007/s12686-012-9649-y     Document Type: Article
Times cited : (2)

References (15)
  • 1
    • 77949335579 scopus 로고    scopus 로고
    • Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence
    • Castoe TA, Poole AW, Gu W, de Koning APJ, Daza JM, Smith EN, Pollock DD (2009) Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence. Mol Ecol Resour 10: 341-347.
    • (2009) Mol Ecol Resour , vol.10 , pp. 341-347
    • Castoe, T.A.1    Poole, A.W.2    Gu, W.3    de Koning, A.P.J.4    Daza, J.M.5    Smith, E.N.6    Pollock, D.D.7
  • 2
    • 0037346501 scopus 로고    scopus 로고
    • Microsatellite Analyser (MSA) a platform independent analysis tool for large microsatellite data sets
    • Dieringer D, Schlötterer C (2003) Microsatellite Analyser (MSA) a platform independent analysis tool for large microsatellite data sets. Mol Ecol Resour 3: 167-169.
    • (2003) Mol Ecol Resour , vol.3 , pp. 167-169
    • Dieringer, D.1    Schlötterer, C.2
  • 3
    • 0342823612 scopus 로고
    • The systematics and distribution of lizards of the genus Phyllodactylus in North and Central America
    • Dixon JR (1964) The systematics and distribution of lizards of the genus Phyllodactylus in North and Central America. New Mexico State Univ Sci Bull 64: 1-139.
    • (1964) New Mexico State Univ Sci Bull , vol.64 , pp. 1-139
    • Dixon, J.R.1
  • 4
    • 36849035794 scopus 로고    scopus 로고
    • Msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design
    • Faircloth BC (2008) Msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design. Mol Ecol Resour 8: 92-94.
    • (2008) Mol Ecol Resour , vol.8 , pp. 92-94
    • Faircloth, B.C.1
  • 5
    • 33645024134 scopus 로고    scopus 로고
    • Using ecological niche modelling to identify diversity hotspots for the herpetofauna of Pacific lowlands and adjacent interior valleys of Mexico
    • García A (2006) Using ecological niche modelling to identify diversity hotspots for the herpetofauna of Pacific lowlands and adjacent interior valleys of Mexico. Biol Conserv 130: 25-46.
    • (2006) Biol Conserv , vol.130 , pp. 25-46
    • García, A.1
  • 6
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41: 95-98.
    • (1999) Nucl Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 7
    • 0032873516 scopus 로고    scopus 로고
    • Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites
    • Hamilton MB, Pincus EL, Di Fiore A, Fleischer RC (1999) Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites. BioTech 27: 500-507.
    • (1999) BioTech , vol.27 , pp. 500-507
    • Hamilton, M.B.1    Pincus, E.L.2    Di Fiore, A.3    Fleischer, R.C.4
  • 8
    • 84859838042 scopus 로고    scopus 로고
    • New polymorphic microsatellite markers of the endangered meadow viper (Vipera ursinii) identified by 454 high-throughput sequencing: when innovation meets conservation
    • Metzger C, Ferchaud A, Geiser C, Ursenbacher S (2011) New polymorphic microsatellite markers of the endangered meadow viper (Vipera ursinii) identified by 454 high-throughput sequencing: when innovation meets conservation. Cons Genet Resour 3: 589-592.
    • (2011) Cons Genet Resour , vol.3 , pp. 589-592
    • Metzger, C.1    Ferchaud, A.2    Geiser, C.3    Ursenbacher, S.4
  • 10
    • 36849080837 scopus 로고    scopus 로고
    • GENEPOP'007: a complete re-implementation of the GENEPOP software for Windows and Linux
    • Rousset F (2008) GENEPOP'007: a complete re-implementation of the GENEPOP software for Windows and Linux. Mol Ecol Resourc 8: 103-106.
    • (2008) Mol Ecol Resourc , vol.8 , pp. 103-106
    • Rousset, F.1
  • 11
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • S. Krawetz, S. Misener, and S. Krawetz (Eds.), Totowa, NJ: Humana Press
    • Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S, Krawetz S (eds) Miseners. Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, NJ, pp 365-386.
    • (2000) Miseners. Bioinformatics Methods and Protocols: Methods in Molecular Biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.J.2
  • 12
    • 0033953635 scopus 로고    scopus 로고
    • An economic method for the fluorescent labelling of PCR fragments
    • Schuelke M (2000) An economic method for the fluorescent labelling of PCR fragments. Nat Biotechnol 18: 233-234.
    • (2000) Nat Biotechnol , vol.18 , pp. 233-234
    • Schuelke, M.1
  • 13
    • 84856233228 scopus 로고    scopus 로고
    • Primers for novel microsatellite markers in "fire-specialist" lizards (Amphibolurus norrisi, Ctenotus atlas and Nephrurus stellatus) and their performance across multiple populations
    • Smith A, Gardner M, Bull M, Driscoll D (2011) Primers for novel microsatellite markers in "fire-specialist" lizards (Amphibolurus norrisi, Ctenotus atlas and Nephrurus stellatus) and their performance across multiple populations. Cons Genet Resour 3: 345-350.
    • (2011) Cons Genet Resour , vol.3 , pp. 345-350
    • Smith, A.1    Gardner, M.2    Bull, M.3    Driscoll, D.4
  • 14
    • 0034060556 scopus 로고    scopus 로고
    • Deforestation of seasonally dry tropical forest: a national and local analysis in Mexico
    • Trejo I, Dirzo R (2000) Deforestation of seasonally dry tropical forest: a national and local analysis in Mexico. Biol Conserv 94: 133-142.
    • (2000) Biol Conserv , vol.94 , pp. 133-142
    • Trejo, I.1    Dirzo, R.2
  • 15
    • 4344606590 scopus 로고    scopus 로고
    • Micro-checker: software for identifying and correcting genotyping errors in microsatellite data
    • van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4: 535-538.
    • (2004) Mol Ecol Notes , vol.4 , pp. 535-538
    • van Oosterhout, C.1    Hutchinson, W.F.2    Wills, D.P.M.3    Shipley, P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.