Primers for novel microsatellite markers in "fire-specialist" lizards (Amphibolurus norrisi, Ctenotus atlas and Nephrurus stellatus) and their performance across multiple populations

Conservation Genetics Resources

Volumn 3, Issue 2, 2011, Pages 345-350

  Smith, Annabel L ^a   Gardner, Michael G ^b   Bull, C Michael ^b   Driscoll, Don A ^a  

^a AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

^b FLINDERS UNIVERSITY   (Australia)

Author keywords

Dispersal; Fire ecology; Gene flow; Population genetics; Rept

Indexed keywords

AMPHIBOLURUS NORRISI; CTENOTUS; NEPHRURUS; SQUAMATA;

EID: 84856233228     PISSN: 18777252     EISSN: 18777260     Source Type: Journal    
DOI: 10.1007/s12686-010-9359-2     Document Type: Note

References (15)

1. Bonin A, Bellemain E, Bronken Eidesen P, Pompanon F, Brochmann C, Taberlet P (2004) How to track and assess genotyping errors in population genetics studies. Mol Ecol 13:3261-3273
2. Clarke MF (2008) Catering for the needs of fauna in fire management: science or just wishful thinking? Wildl. Res 35:385-394
3. DeWoody J, Nason JD, Hipkins VD (2006) Mitigating scoring errors in microsatellite data from wild populations. Mol Ecol Notes 6:951-957
4. Driscoll DA, Henderson MK (2008) How many common reptile species are fire specialists? A replicated natural experiment highlights the predictive weakness of a fire succession model. Biol Conserv 141:460-471
5. Gardner MG, Cooper SJB, Bull CM, Grant WN (1999) Isolation of microsatellite loci from a social lizard, Egernia stokesii, using a modified enrichment procedure. J Hered 90:301-304
6. Gardner MG, Sanshez JJ, Dudaniec RY, Rheinberger L, Smith AL, Saint KM (2008) Tiliqua rugosa microsatellites: isolation via enrichment and characterisation of loci for multiplex PCR in T. rugosa and the endangered T. adelaidensis. Conserv Genet 9:233-237
7. Hayden MJ, Nguyen TM, Waterman A, Chalmers KJ (2008) Multiplex-Ready PCR: a new method for multiplexed SSR and SNP genotyping. BMC Genomics 9:80
8. Hochberg Y (1988) A sharper Bonferroni procedure for multiple tests of significance. Biometrika 75:800-802
9. Meglécz E (2007) MICROFAMILY (version 1): a computer program for detecting flanking-region similarities among different microsatellite loci. Mol Ecol Notes 7:18-20
10. Meglécz E, Costedoat C, Debut V, Gilles A, Malausa T, Pech N, Martin J-F (2010) QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects. Bioinformatics 26(3):403-404
11. Murphy AR, Gardner MG, Fox SF (2009) Isolation of microsatellites via enrichment and a sequence tagged method in a South American lizard with suspected parental care, Liolaemus leopardinus. Conserv Genet Resour 1(1):13-16. doi:10.1007/ s12686-009-9003-1
12. Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6:288-295
13. Raymond M, Rousset F (1995) GENEPOP (Version 1.2): population genetics software for exact tests and ecumenicism. J Hered 86:248-249
14. Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535-538
15. Whelan RJ, Rodgerson L, Dickman CR, Sutherland EF (2002) Critical life cycles of plants and animals: developing a processbased understanding of population changes in fire-prone landscapes. In: Bradstock RA, Williams JE, Gill AM (eds) Flammable Australia: the fire regimes and biodiversity of a continent. Cambridge University Press, Cambridge