-
1
-
-
0013894468
-
The role and control of the glyoxylate cycle in Escherichia coli
-
Kornberg, H. L. (1966) The role and control of the glyoxylate cycle in Escherichia coli. Biochem. J. 99, 1-11
-
(1966)
Biochem. J.
, vol.99
, pp. 1-11
-
-
Kornberg, H.L.1
-
2
-
-
0018397107
-
Phosphorylation of isocitrate dehydrogenase of Escherichia coli
-
Garnak, M., and Reeves, H. C. (1979) Phosphorylation of isocitrate dehydrogenase of Escherichia coli. Science 203, 1111-1112
-
(1979)
Science
, vol.203
, pp. 1111-1112
-
-
Garnak, M.1
Reeves, H.C.2
-
3
-
-
0020355238
-
A protein with kinase and phosphatase activities involved in regulation of tricarboxylic acid cycle
-
LaPorte, D. C., and Koshland, D. E. (1982) A protein with kinase and phosphatase activities involved in regulation of tricarboxylic acid cycle. Nature 300, 458-460
-
(1982)
Nature
, vol.300
, pp. 458-460
-
-
LaPorte, D.C.1
Koshland, D.E.2
-
4
-
-
0020592357
-
Phosphorylation of isocitrate dehydrogenase as a demonstration of enhanced sensitivity in covalent regulation
-
LaPorte, D. C., and Koshland, D. E., Jr. (1983) Phosphorylation of isocitrate dehydrogenase as a demonstration of enhanced sensitivity in covalent regulation. Nature 305, 286-290
-
(1983)
Nature
, vol.305
, pp. 286-290
-
-
LaPorte, D.C.1
Koshland Jr., D.E.2
-
5
-
-
0024453153
-
Isocitrate dehydrogenase kinase/phosphatase
-
LaPorte, D. C., Stueland, C. S., and Ikeda, T. P. (1989) Isocitrate dehydrogenase kinase/phosphatase. Biochimie 71, 1051-1057
-
(1989)
Biochimie
, vol.71
, pp. 1051-1057
-
-
LaPorte, D.C.1
Stueland, C.S.2
Ikeda, T.P.3
-
6
-
-
0027439904
-
The isocitrate dehydrogenase phosphorylation cycle: Regulation and enzymology
-
LaPorte, D. C. (1993) The isocitrate dehydrogenase phosphorylation cycle: Regulation and enzymology. J. Cell Biochem. 51, 14-18
-
(1993)
J. Cell Biochem.
, vol.51
, pp. 14-18
-
-
LaPorte, D.C.1
-
7
-
-
30744432855
-
Control of isocitrate dehydrogenase catalytic activity by protein phosphorylation in Escherichia coli
-
Cozzone, A. J., and El-Mansi, M. (2005) Control of isocitrate dehydrogenase catalytic activity by protein phosphorylation in Escherichia coli. J. Mol. Microbiol. Biotechnol. 9, 132-146
-
(2005)
J. Mol. Microbiol. Biotechnol.
, vol.9
, pp. 132-146
-
-
Cozzone, A.J.1
El-Mansi, M.2
-
8
-
-
0022212761
-
Compensatory phosphorylation of isocitrate dehydrogenase: A mechanism for adaptation to the intracellular environment
-
LaPorte, D. C., Thorsness, P. E., and Koshland, D. E. (1985) Compensatory phosphorylation of isocitrate dehydrogenase: A mechanism for adaptation to the intracellular environment. J. Biol. Chem. 260, 10563-10568
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 10563-10568
-
-
LaPorte, D.C.1
Thorsness, P.E.2
Koshland, D.E.3
-
9
-
-
0016744341
-
Regulation of nitrogen metabolism in Escherichia coli and Klebsiella aerogenes: Studies with the continuous-culture technique
-
Senior, P. J. (1975) Regulation of nitrogen metabolism in Escherichia coli and Klebsiella aerogenes: Studies with the continuous-culture technique. J. Bacteriol. 123, 407-418
-
(1975)
J. Bacteriol.
, vol.123
, pp. 407-418
-
-
Senior, P.J.1
-
10
-
-
0037457896
-
Robustness and the cycle of phosphorylation and dephosphorylation in a two-component regulatory system
-
Batchelor, E., and Goulian, M. (2003) Robustness and the cycle of phosphorylation and dephosphorylation in a two-component regulatory system. Proc. Natl. Acad. Sci. U.S.A. 100, 691-696
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 691-696
-
-
Batchelor, E.1
Goulian, M.2
-
11
-
-
33746039276
-
High-level expression of coldtolerant pyruvate, orthophosphate dikinase from a genomic clone with site-directed mutations in transgenic maize
-
Ohta, S., Ishida, Y., and Usami, S. (2006) High-level expression of coldtolerant pyruvate, orthophosphate dikinase from a genomic clone with site-directed mutations in transgenic maize. Mol. Breeding 18, 29-38
-
(2006)
Mol. Breeding
, vol.18
, pp. 29-38
-
-
Ohta, S.1
Ishida, Y.2
Usami, S.3
-
12
-
-
0027504131
-
The essential tension: Opposed reactions in bacterial two-component regulatory systems
-
Russo, F. D., and Silhavy, T. J. (1993) The essential tension: Opposed reactions in bacterial two-component regulatory systems. Trends Microbiol. 1, 306-310
-
(1993)
Trends Microbiol.
, vol.1
, pp. 306-310
-
-
Russo, F.D.1
Silhavy, T.J.2
-
13
-
-
77951796163
-
Systems biology. Biological systems theory
-
Gunawardena, J. (2010) Systems biology. Biological systems theory. Science 328, 581-582
-
(2010)
Science
, vol.328
, pp. 581-582
-
-
Gunawardena, J.1
-
14
-
-
36749094352
-
Input output robustness in simple bacterial signaling systems
-
Shinar, G., Milo, R., Martínez, M. R., and Alon, U. (2007) Input output robustness in simple bacterial signaling systems. Proc. Natl. Acad. Sci. U.S.A. 104, 19931-19935
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 19931-19935
-
-
Shinar, G.1
Milo, R.2
Martínez, M.R.3
Alon, U.4
-
15
-
-
63549146900
-
Robustness in glyoxylate bypass regulation
-
Shinar, G., Rabinowitz, J. D., and Alon, U. (2009) Robustness in glyoxylate bypass regulation. PLoS Comput. Biol. 5, e1000297
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Shinar, G.1
Rabinowitz, J.D.2
Alon, U.3
-
16
-
-
78650718305
-
Robust control of nitrogen assimilation by a bifunctional enzyme in E. coli
-
Hart, Y., Madar, D., Yuan, J., Bren, A., Mayo, A. E., Rabinowitz, J. D., and Alon, U. (2011) Robust control of nitrogen assimilation by a bifunctional enzyme in E. coli. Mol. Cell 41, 117-127
-
(2011)
Mol. Cell
, vol.41
, pp. 117-127
-
-
Hart, Y.1
Madar, D.2
Yuan, J.3
Bren, A.4
Mayo, A.E.5
Rabinowitz, J.D.6
Alon, U.7
-
17
-
-
80054821508
-
Robust control of PEP formation rate in the carbon fixation pathway of C4 plants by a bi-functional enzyme
-
Hart, Y., Mayo, A. E., Milo, R., and Alon, U. (2011) Robust control of PEP formation rate in the carbon fixation pathway of C4 plants by a bi-functional enzyme. BMC Syst. Biol. 5, 171
-
(2011)
BMC Syst. Biol.
, vol.5
, pp. 171
-
-
Hart, Y.1
Mayo, A.E.2
Milo, R.3
Alon, U.4
-
18
-
-
0024392725
-
Structure of a bacterial enzyme regulated by phosphorylation, isocitrate dehydrogenase
-
Hurley, J. H., Thorsness, P. E., Ramalingam, V., Helmers, N. H., Koshland, D. E., Jr., and Stroud, R. M. (1989) Structure of a bacterial enzyme regulated by phosphorylation, isocitrate dehydrogenase. Proc. Natl. Acad. Sci. U.S.A. 86, 8635-8639
-
(1989)
Proc. Natl. Acad. Sci. U.S.A.
, vol.86
, pp. 8635-8639
-
-
Hurley, J.H.1
Thorsness, P.E.2
Ramalingam, V.3
Helmers, N.H.4
Koshland Jr., D.E.5
Stroud, R.M.6
-
19
-
-
77953720173
-
Structure of the bifunctional isocitrate dehydrogenase kinase/phosphatase
-
Zheng, J., and Jia, Z. (2010) Structure of the bifunctional isocitrate dehydrogenase kinase/phosphatase. Nature 465, 961-965
-
(2010)
Nature
, vol.465
, pp. 961-965
-
-
Zheng, J.1
Jia, Z.2
-
20
-
-
0024405978
-
Mutation of the predicted ATP binding site inactivates both activities of isocitrate dehydrogenase kinase/phosphatase
-
Stueland, C. S., Ikeda, T. P., and LaPorte, D. C. (1989) Mutation of the predicted ATP binding site inactivates both activities of isocitrate dehydrogenase kinase/phosphatase. J. Biol. Chem. 264, 13775-13779
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 13775-13779
-
-
Stueland, C.S.1
Ikeda, T.P.2
LaPorte, D.C.3
-
21
-
-
0023819835
-
Photoaffinity labelling shows that Escherichia coli isocitrate dehydrogenase kinase/phosphatase contains a single ATP-binding site
-
Varela, I., and Nimmo, H. G. (1988) Photoaffinity labelling shows that Escherichia coli isocitrate dehydrogenase kinase/phosphatase contains a single ATP-binding site. FEBS Lett. 231, 361-365
-
(1988)
FEBS Lett.
, vol.231
, pp. 361-365
-
-
Varela, I.1
Nimmo, H.G.2
-
22
-
-
0029782927
-
Isocitrate dehydrogenase kinase/phosphatase: Kinetic characteristics of the wild-type and two mutant proteins
-
Miller, S. P., Karschnia, E. J., Ikeda, T. P., and LaPorte, D. C. (1996) Isocitrate dehydrogenase kinase/phosphatase: Kinetic characteristics of the wild-type and two mutant proteins. J. Biol. Chem. 271, 19124-19128
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 19124-19128
-
-
Miller, S.P.1
Karschnia, E.J.2
Ikeda, T.P.3
LaPorte, D.C.4
-
23
-
-
0024440163
-
Studies of the phosphorylation of Escherichia coli isocitrate dehydrogenase. Recognition of the enzyme by isocitrate dehydrogenase kinase/phosphatase and effects of phosphorylation on its structure and properties
-
McKee, J. S., Hlodan, R., and Nimmo, H. G. (1989) Studies of the phosphorylation of Escherichia coli isocitrate dehydrogenase. Recognition of the enzyme by isocitrate dehydrogenase kinase/phosphatase and effects of phosphorylation on its structure and properties. Biochimie 71, 1059-1064
-
(1989)
Biochimie
, vol.71
, pp. 1059-1064
-
-
McKee, J.S.1
Hlodan, R.2
Nimmo, H.G.3
-
24
-
-
80053002310
-
Structural basis of the substrate specificity of bifunctional isocitrate dehydrogenase kinase/ phosphatase
-
Yates, S. P., Edwards, T. E., Bryan, C. M., Stein, A. J., Van Voorhis, W. C., Myler, P. J., Stewart, L. J., Zheng, J., and Jia, Z. (2011) Structural basis of the substrate specificity of bifunctional isocitrate dehydrogenase kinase/ phosphatase. Biochemistry 50, 8103-8106
-
(2011)
Biochemistry
, vol.50
, pp. 8103-8106
-
-
Yates, S.P.1
Edwards, T.E.2
Bryan, C.M.3
Stein, A.J.4
Van Voorhis, W.C.5
Myler, P.J.6
Stewart, L.J.7
Zheng, J.8
Jia, Z.9
-
25
-
-
0036510396
-
Bacillus subtilis isocitrate dehydrogenase: A substrate analogue for Escherichia coli isocitrate dehydrogenase kinase/phosphatase
-
Singh, S. K., Miller, S. P., Dean, A., Banaszak, L. J., and LaPorte, D. C. (2002) Bacillus subtilis isocitrate dehydrogenase: A substrate analogue for Escherichia coli isocitrate dehydrogenase kinase/phosphatase. J. Biol. Chem. 277, 7567-7573
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 7567-7573
-
-
Singh, S.K.1
Miller, S.P.2
Dean, A.3
Banaszak, L.J.4
LaPorte, D.C.5
-
26
-
-
84865575045
-
Realistic enzymology for post-translational modification: Zero-order ultrasensitivity revisited
-
Xu, Y., and Gunawardena, J. (2012) Realistic enzymology for post-translational modification: Zero-order ultrasensitivity revisited. J. Theor. Biol. 311, 139-152
-
(2012)
J. Theor. Biol.
, vol.311
, pp. 139-152
-
-
Xu, Y.1
Gunawardena, J.2
-
27
-
-
0024380864
-
Phosphorylation inactivates Escherichia coli isocitrate dehydrogenase by preventing isocitrate binding
-
Dean, A. M., Lee, M. H. I., and Koshland, D. E., Jr. (1989) Phosphorylation inactivates Escherichia coli isocitrate dehydrogenase by preventing isocitrate binding. J. Biol. Chem. 264, 20482-20486
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 20482-20486
-
-
Dean, A.M.1
Lee, M.H.I.2
Koshland Jr., D.E.3
-
28
-
-
0346220393
-
The role of dynamics in allosteric regulation
-
Kern, D., and Zuiderweg, E. R. P. (2003) The role of dynamics in allosteric regulation. Curr. Opin. Struct. Biol. 13, 748-757
-
(2003)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 748-757
-
-
Kern, D.1
Zuiderweg, E.R.P.2
-
29
-
-
58749090027
-
The geometry of multisite phosphorylation
-
Manrai, A. K., and Gunawardena, J. (2008) The geometry of multisite phosphorylation. Biophys. J. 95, 5533-5543
-
(2008)
Biophys. J.
, vol.95
, pp. 5533-5543
-
-
Manrai, A.K.1
Gunawardena, J.2
-
31
-
-
77949398351
-
Structural sources of robustness in biochemical reaction networks
-
Shinar, G., and Feinberg, M. (2010) Structural sources of robustness in biochemical reaction networks. Science 327, 1389-1391
-
(2010)
Science
, vol.327
, pp. 1389-1391
-
-
Shinar, G.1
Feinberg, M.2
-
32
-
-
0021451675
-
Isolation of active and inactive forms of isocitrate dehydrogenase from Escherichia coli ML 308
-
Borthwick, A. C., Holms, W. H., and Nimmo, H. G. (1984) Isolation of active and inactive forms of isocitrate dehydrogenase from Escherichia coli ML 308. Eur. J. Biochem. 141, 393-400
-
(1984)
Eur. J. Biochem.
, vol.141
, pp. 393-400
-
-
Borthwick, A.C.1
Holms, W.H.2
Nimmo, H.G.3
-
33
-
-
0021448708
-
Partial purification and properties of isocitrate dehydrogenase kinase/ phosphatase from Escherichia coli ML308
-
Nimmo, G. A., Borthwick, A. C., Holms, W. H., and Nimmo, H. G. (1984) Partial purification and properties of isocitrate dehydrogenase kinase/ phosphatase from Escherichia coli ML308. Eur. J. Biochem. 141, 401-408
-
(1984)
Eur. J. Biochem.
, vol.141
, pp. 401-408
-
-
Nimmo, G.A.1
Borthwick, A.C.2
Holms, W.H.3
Nimmo, H.G.4
-
34
-
-
0842288229
-
Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades
-
Markevich, N. I., Hoek, J. B., and Kholodenko, B. N. (2004) Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades. J. Cell Biol. 164, 353-359
-
(2004)
J. Cell Biol.
, vol.164
, pp. 353-359
-
-
Markevich, N.I.1
Hoek, J.B.2
Kholodenko, B.N.3
-
35
-
-
67650360968
-
Unlimited multistability in multisite phosphorylation systems
-
Thomson, M., and Gunawardena, J. (2009) Unlimited multistability in multisite phosphorylation systems. Nature 460, 274-277
-
(2009)
Nature
, vol.460
, pp. 274-277
-
-
Thomson, M.1
Gunawardena, J.2
-
37
-
-
79954617424
-
Design principles for robust biochemical reaction networks: What works, what cannot work, and what might almost work
-
Shinar, G., and Feinberg, M. (2011) Design principles for robust biochemical reaction networks: What works, what cannot work, and what might almost work. Math. Biosci. 231, 39-48
-
(2011)
Math. Biosci.
, vol.231
, pp. 39-48
-
-
Shinar, G.1
Feinberg, M.2
-
38
-
-
0033563158
-
The isocitrate dehydrogenase kinase/phosphatase from Escherichia coli is highly sensitive to in-vitro oxidative conditions role of cysteine67 and cysteine108 in the formation of a disulfide-bonded homodimer
-
Oudot, C., Jaquinod, M., Cortay, J.-C., Cozzone, A. J., and Jault, J.-M. (1999) The isocitrate dehydrogenase kinase/phosphatase from Escherichia coli is highly sensitive to in-vitro oxidative conditions role of cysteine67 and cysteine108 in the formation of a disulfide-bonded homodimer. Eur. J. Biochem. 262, 224-229
-
(1999)
Eur. J. Biochem.
, vol.262
, pp. 224-229
-
-
Oudot, C.1
Jaquinod, M.2
Cortay, J.-C.3
Cozzone, A.J.4
Jault, J.-M.5
-
39
-
-
67449085163
-
Purification, crystallization, and preliminary X-ray analysis of isocitrate dehydrogenase kinase/phosphatase from Escherichia coli
-
Zheng, J., Lee, D. C., and Jia, Z. (2009) Purification, crystallization, and preliminary X-ray analysis of isocitrate dehydrogenase kinase/phosphatase from Escherichia coli. Acta. Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 65, 536-539
-
(2009)
Acta. Crystallogr. Sect. F Struct. Biol. Cryst. Commun.
, vol.65
, pp. 536-539
-
-
Zheng, J.1
Lee, D.C.2
Jia, Z.3
-
40
-
-
73449111572
-
Purification, crystallization, and preliminary X-ray analysis of bifunctional isocitrate dehydrogenase kinase/ phosphatase in complex with its substrate, isocitrate dehydrogenase, from Escherichia coli
-
Zheng, J., Ji, A. X., and Jia, Z. (2009) Purification, crystallization, and preliminary X-ray analysis of bifunctional isocitrate dehydrogenase kinase/ phosphatase in complex with its substrate, isocitrate dehydrogenase, from Escherichia coli. Acta. Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 65, 1153-1156
-
(2009)
Acta. Crystallogr. Sect. F Struct. Biol. Cryst. Commun.
, vol.65
, pp. 1153-1156
-
-
Zheng, J.1
Ji, A.X.2
Jia, Z.3
-
41
-
-
0012401358
-
Multiple chemical forms of hepatitis B surface antigen produced in yeast
-
Wampler, D. E., Lehman, E. D., Boger, J., McAleer, W. J., and Scolnick, E. M. (1985) Multiple chemical forms of hepatitis B surface antigen produced in yeast. Proc. Natl. Acad. Sci. U.S.A. 82, 6830-6834
-
(1985)
Proc. Natl. Acad. Sci. U.S.A.
, vol.82
, pp. 6830-6834
-
-
Wampler, D.E.1
Lehman, E.D.2
Boger, J.3
McAleer, W.J.4
Scolnick, E.M.5
-
42
-
-
44449100825
-
Signal processing by theHOGMAP kinase pathway
-
Hersen, P., McClean, M. N., Mahadevan, L., and Ramanathan, S. (2008) Signal processing by theHOGMAP kinase pathway. Proc. Natl. Acad. Sci. U.S.A. 105, 7165-7170
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 7165-7170
-
-
Hersen, P.1
McClean, M.N.2
Mahadevan, L.3
Ramanathan, S.4
-
43
-
-
50649120833
-
Metabolic gene regulation in a dynamically changing environment
-
Bennett, M. R., Pang, W. L., Ostroff, N. A., Baumgartner, B. L., Nayak, S., Tsimring, L. S., and Hasty, J. (2008) Metabolic gene regulation in a dynamically changing environment. Nature 454, 1119-1122
-
(2008)
Nature
, vol.454
, pp. 1119-1122
-
-
Bennett, M.R.1
Pang, W.L.2
Ostroff, N.A.3
Baumgartner, B.L.4
Nayak, S.5
Tsimring, L.S.6
Hasty, J.7
-
44
-
-
79954517116
-
Comparative analysis of Erk phosphorylation suggests a mixed strategy for measuring phospho-form distributions
-
Prabakaran, S., Everley, R. A., Landrieu, I., Wieruszeski, J.-M., Lippens, G., Steen, H., and Gunawardena, J. (2011) Comparative analysis of Erk phosphorylation suggests a mixed strategy for measuring phospho-form distributions. Mol. Syst. Biol. 7, 482
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 482
-
-
Prabakaran, S.1
Everley, R.A.2
Landrieu, I.3
Wieruszeski, J.-M.4
Lippens, G.5
Steen, H.6
Gunawardena, J.7
-
45
-
-
61349153686
-
-
(Lodhi, H., and Muggleton, S., eds), John Wiley & Sons, Inc., New York
-
Gunawardena, J. (2009) in (2009) Elements of Computational Systems Biology (Lodhi, H., and Muggleton, S., eds) pp. 21-48, John Wiley & Sons, Inc., New York
-
(2009)
2009 Elements of Computational Systems Biology
, pp. 21-48
-
-
Gunawardena, J.1
|