-
1
-
-
77953080874
-
FOXA1 is an essential determinant of ERalpha expression and mammary ductal morphogenesis
-
Bernardo G.M., Lozada K.L., Miedler J.D., Harburg G., Hewitt S.C., Mosley J.D., Godwin A.K., Korach K.S., Visvader J.E., Kaestner K.H., et al. FOXA1 is an essential determinant of ERalpha expression and mammary ductal morphogenesis. Development 2010, 137:2045-2054.
-
(2010)
Development
, vol.137
, pp. 2045-2054
-
-
Bernardo, G.M.1
Lozada, K.L.2
Miedler, J.D.3
Harburg, G.4
Hewitt, S.C.5
Mosley, J.D.6
Godwin, A.K.7
Korach, K.S.8
Visvader, J.E.9
Kaestner, K.H.10
-
2
-
-
8444244786
-
X-tile: a new bio-informatics tool for biomarker assessment and outcome-based cut-point optimization
-
Camp R.L., Dolled-Filhart M., Rimm D.L. X-tile: a new bio-informatics tool for biomarker assessment and outcome-based cut-point optimization. Clin. Cancer Res. 2004, 10:7252-7259.
-
(2004)
Clin. Cancer Res.
, vol.10
, pp. 7252-7259
-
-
Camp, R.L.1
Dolled-Filhart, M.2
Rimm, D.L.3
-
3
-
-
84877028141
-
Comprehensive molecular portraits of human breast tumours
-
Cancer Genome Atlas Network
-
Comprehensive molecular portraits of human breast tumours. Nature 2012, 490:61-70. Cancer Genome Atlas Network.
-
(2012)
Nature
, vol.490
, pp. 61-70
-
-
-
4
-
-
22144486551
-
Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1
-
Carroll J.S., Liu X.S., Brodsky A.S., Li W., Meyer C.A., Szary A.J., Eeckhoute J., Shao W., Hestermann E.V., Geistlinger T.R., et al. Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1. Cell 2005, 122:33-43.
-
(2005)
Cell
, vol.122
, pp. 33-43
-
-
Carroll, J.S.1
Liu, X.S.2
Brodsky, A.S.3
Li, W.4
Meyer, C.A.5
Szary, A.J.6
Eeckhoute, J.7
Shao, W.8
Hestermann, E.V.9
Geistlinger, T.R.10
-
5
-
-
33750442923
-
Genome-wide analysis of estrogen receptor binding sites
-
Carroll J.S., Meyer C.A., Song J., Li W., Geistlinger T.R., Eeckhoute J., Brodsky A.S., Keeton E.K., Fertuck K.C., Hall G.F., et al. Genome-wide analysis of estrogen receptor binding sites. Nat. Genet. 2006, 38:1289-1297.
-
(2006)
Nat. Genet.
, vol.38
, pp. 1289-1297
-
-
Carroll, J.S.1
Meyer, C.A.2
Song, J.3
Li, W.4
Geistlinger, T.R.5
Eeckhoute, J.6
Brodsky, A.S.7
Keeton, E.K.8
Fertuck, K.C.9
Hall, G.F.10
-
6
-
-
20144386127
-
Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival
-
Chang H.Y., Nuyten D.S.A., Sneddon J.B., Hastie T., Tibshirani R., Sørlie T., Dai H.Y., He Y.D.D., van't Veer L.J., Bartelink H., et al. Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival. Proc. Natl. Acad. Sci. USA 2005, 102:3738-3743.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 3738-3743
-
-
Chang, H.Y.1
Nuyten, D.S.A.2
Sneddon, J.B.3
Hastie, T.4
Tibshirani, R.5
Sørlie, T.6
Dai, H.Y.7
He, Y.D.D.8
van't Veer, L.J.9
Bartelink, H.10
-
7
-
-
50449111314
-
Nuclear receptor drug discovery
-
Chen T. Nuclear receptor drug discovery. Curr. Opin. Chem. Biol. 2008, 12:418-426.
-
(2008)
Curr. Opin. Chem. Biol.
, vol.12
, pp. 418-426
-
-
Chen, T.1
-
8
-
-
52949111533
-
Minireview: nuclear receptors and breast cancer
-
Conzen S.D. Minireview: nuclear receptors and breast cancer. Mol. Endocrinol. 2008, 22:2215-2228.
-
(2008)
Mol. Endocrinol.
, vol.22
, pp. 2215-2228
-
-
Conzen, S.D.1
-
9
-
-
0036782706
-
Transcription factors as targets for cancer therapy
-
Darnell J.E. Transcription factors as targets for cancer therapy. Nat. Rev. Cancer 2002, 2:740-749.
-
(2002)
Nat. Rev. Cancer
, vol.2
, pp. 740-749
-
-
Darnell, J.E.1
-
10
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
ENCODE Project Consortium
-
Dunham I., Kundaje A., Aldred S.F., Collins P.J., Davis C.A., Doyle F., Epstein C.B., Frietze S., Harrow J., Kaul R., et al. An integrated encyclopedia of DNA elements in the human genome. Nature 2012, 489:57-74. ENCODE Project Consortium.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
Dunham, I.1
Kundaje, A.2
Aldred, S.F.3
Collins, P.J.4
Davis, C.A.5
Doyle, F.6
Epstein, C.B.7
Frietze, S.8
Harrow, J.9
Kaul, R.10
-
11
-
-
34447130861
-
Positive cross-regulatory loop ties GATA-3 to estrogen receptor alpha expression in breast cancer
-
Eeckhoute J., Keeton E.K., Lupien M., Krum S.A., Carroll J.S., Brown M. Positive cross-regulatory loop ties GATA-3 to estrogen receptor alpha expression in breast cancer. Cancer Res. 2007, 67:6477-6483.
-
(2007)
Cancer Res.
, vol.67
, pp. 6477-6483
-
-
Eeckhoute, J.1
Keeton, E.K.2
Lupien, M.3
Krum, S.A.4
Carroll, J.S.5
Brown, M.6
-
12
-
-
0242691046
-
AP-1: a double-edged sword in tumorigenesis
-
Eferl R., Wagner E.F. AP-1: a double-edged sword in tumorigenesis. Nat. Rev. Cancer 2003, 3:859-868.
-
(2003)
Nat. Rev. Cancer
, vol.3
, pp. 859-868
-
-
Eferl, R.1
Wagner, E.F.2
-
13
-
-
22344444593
-
The nuclear receptor superfamily: a rosetta stone for physiology
-
Evans R.M. The nuclear receptor superfamily: a rosetta stone for physiology. Mol. Endocrinol. 2005, 19:1429-1438.
-
(2005)
Mol. Endocrinol.
, vol.19
, pp. 1429-1438
-
-
Evans, R.M.1
-
14
-
-
70449103609
-
An oestrogen-receptor-alpha-bound human chromatin interactome
-
Fullwood M.J., Liu M.H., Pan Y.F., Liu J., Xu H., Mohamed Y.B., Orlov Y.L., Velkov S., Ho A., Mei P.H., et al. An oestrogen-receptor-alpha-bound human chromatin interactome. Nature 2009, 462:58-64.
-
(2009)
Nature
, vol.462
, pp. 58-64
-
-
Fullwood, M.J.1
Liu, M.H.2
Pan, Y.F.3
Liu, J.4
Xu, H.5
Mohamed, Y.B.6
Orlov, Y.L.7
Velkov, S.8
Ho, A.9
Mei, P.H.10
-
15
-
-
78650410139
-
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
-
modENCODE Consortium
-
Gerstein M.B., Lu Z.J., Van Nostrand E.L., Cheng C., Arshinoff B.I., Liu T., Yip K.Y., Robilotto R., Rechtsteiner A., Ikegami K., et al. Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science 2010, 330:1775-1787. modENCODE Consortium.
-
(2010)
Science
, vol.330
, pp. 1775-1787
-
-
Gerstein, M.B.1
Lu, Z.J.2
Van Nostrand, E.L.3
Cheng, C.4
Arshinoff, B.I.5
Liu, T.6
Yip, K.Y.7
Robilotto, R.8
Rechtsteiner, A.9
Ikegami, K.10
-
16
-
-
84865739425
-
Architecture of the human regulatory network derived from ENCODE data
-
Gerstein M.B., Kundaje A., Hariharan M., Landt S.G., Yan K.K., Cheng C., Mu X.J., Khurana E., Rozowsky J., Alexander R., et al. Architecture of the human regulatory network derived from ENCODE data. Nature 2012, 489:91-100.
-
(2012)
Nature
, vol.489
, pp. 91-100
-
-
Gerstein, M.B.1
Kundaje, A.2
Hariharan, M.3
Landt, S.G.4
Yan, K.K.5
Cheng, C.6
Mu, X.J.7
Khurana, E.8
Rozowsky, J.9
Alexander, R.10
-
17
-
-
34250369627
-
FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin
-
Giresi P.G., Kim J., McDaniell R.M., Iyer V.R., Lieb J.D. FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin. Genome Res. 2007, 17:877-885.
-
(2007)
Genome Res.
, vol.17
, pp. 877-885
-
-
Giresi, P.G.1
Kim, J.2
McDaniell, R.M.3
Iyer, V.R.4
Lieb, J.D.5
-
18
-
-
80053567577
-
Tackling transcription factors: challenges in antitumor therapy
-
Grivas P.D., Kiaris H., Papavassiliou A.G. Tackling transcription factors: challenges in antitumor therapy. Trends Mol. Med. 2011, 17:537-538.
-
(2011)
Trends Mol. Med.
, vol.17
, pp. 537-538
-
-
Grivas, P.D.1
Kiaris, H.2
Papavassiliou, A.G.3
-
20
-
-
79955836460
-
A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells
-
Hah N., Danko C.G., Core L., Waterfall J.J., Siepel A., Lis J.T., Kraus W.L. A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells. Cell 2011, 145:622-634.
-
(2011)
Cell
, vol.145
, pp. 622-634
-
-
Hah, N.1
Danko, C.G.2
Core, L.3
Waterfall, J.J.4
Siepel, A.5
Lis, J.T.6
Kraus, W.L.7
-
21
-
-
0032896905
-
Estrogen receptor status by immunohistochemistry is superior to the ligand-binding assay for predicting response to adjuvant endocrine therapy in breast cancer
-
Harvey J.M., Clark G.M., Osborne C.K., Allred D.C. Estrogen receptor status by immunohistochemistry is superior to the ligand-binding assay for predicting response to adjuvant endocrine therapy in breast cancer. J. Clin. Oncol. 1999, 17:1474-1481.
-
(1999)
J. Clin. Oncol.
, vol.17
, pp. 1474-1481
-
-
Harvey, J.M.1
Clark, G.M.2
Osborne, C.K.3
Allred, D.C.4
-
22
-
-
33646874546
-
The molecular portraits of breast tumors are conserved across microarray platforms
-
Hu Z., Fan C., Oh D.S., Marron J.S., He X., Qaqish B.F., Livasy C., Carey L.A., Reynolds E., Dressler L., et al. The molecular portraits of breast tumors are conserved across microarray platforms. BMC Genomics 2006, 7:96.
-
(2006)
BMC Genomics
, vol.7
, pp. 96
-
-
Hu, Z.1
Fan, C.2
Oh, D.S.3
Marron, J.S.4
He, X.5
Qaqish, B.F.6
Livasy, C.7
Carey, L.A.8
Reynolds, E.9
Dressler, L.10
-
23
-
-
42149103735
-
Genomic analysis of estrogen cascade reveals histone variant H2A.Z associated with breast cancer progression
-
Hua S., Kallen C.B., Dhar R., Baquero M.T., Mason C.E., Russell B.A., Shah P.K., Liu J., Khramtsov A., Tretiakova M.S., et al. Genomic analysis of estrogen cascade reveals histone variant H2A.Z associated with breast cancer progression. Mol. Syst. Biol. 2008, 4:188.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 188
-
-
Hua, S.1
Kallen, C.B.2
Dhar, R.3
Baquero, M.T.4
Mason, C.E.5
Russell, B.A.6
Shah, P.K.7
Liu, J.8
Khramtsov, A.9
Tretiakova, M.S.10
-
24
-
-
67549104319
-
Genomic antagonism between retinoic acid and estrogen signaling in breast cancer
-
Hua S., Kittler R., White K.P. Genomic antagonism between retinoic acid and estrogen signaling in breast cancer. Cell 2009, 137:1259-1271.
-
(2009)
Cell
, vol.137
, pp. 1259-1271
-
-
Hua, S.1
Kittler, R.2
White, K.P.3
-
25
-
-
79952184341
-
Chromatin accessibility pre-determines glucocorticoid receptor binding patterns
-
John S., Sabo P.J., Thurman R.E., Sung M.H., Biddie S.C., Johnson T.A., Hager G.L., Stamatoyannopoulos J.A. Chromatin accessibility pre-determines glucocorticoid receptor binding patterns. Nat. Genet. 2011, 43:264-268.
-
(2011)
Nat. Genet.
, vol.43
, pp. 264-268
-
-
John, S.1
Sabo, P.J.2
Thurman, R.E.3
Sung, M.H.4
Biddie, S.C.5
Johnson, T.A.6
Hager, G.L.7
Stamatoyannopoulos, J.A.8
-
26
-
-
80052398200
-
Cellular reprogramming by the conjoint action of ERα, FOXA1, and GATA3 to a ligand-inducible growth state
-
Kong S.L., Li G., Loh S.L., Sung W.K., Liu E.T. Cellular reprogramming by the conjoint action of ERα, FOXA1, and GATA3 to a ligand-inducible growth state. Mol. Syst. Biol. 2011, 7:526.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 526
-
-
Kong, S.L.1
Li, G.2
Loh, S.L.3
Sung, W.K.4
Liu, E.T.5
-
27
-
-
33751202983
-
GATA-3 maintains the differentiation of the luminal cell fate in the mammary gland
-
Kouros-Mehr H., Slorach E.M., Sternlicht M.D., Werb Z. GATA-3 maintains the differentiation of the luminal cell fate in the mammary gland. Cell 2006, 127:1041-1055.
-
(2006)
Cell
, vol.127
, pp. 1041-1055
-
-
Kouros-Mehr, H.1
Slorach, E.M.2
Sternlicht, M.D.3
Werb, Z.4
-
28
-
-
55749095056
-
PPARgamma and C/EBP factors orchestrate adipocyte biology via adjacent binding on a genome-wide scale
-
Lefterova M.I., Zhang Y., Steger D.J., Schupp M., Schug J., Cristancho A., Feng D., Zhuo D., Stoeckert C.J., Liu X.S., Lazar M.A. PPARgamma and C/EBP factors orchestrate adipocyte biology via adjacent binding on a genome-wide scale. Genes Dev. 2008, 22:2941-2952.
-
(2008)
Genes Dev.
, vol.22
, pp. 2941-2952
-
-
Lefterova, M.I.1
Zhang, Y.2
Steger, D.J.3
Schupp, M.4
Schug, J.5
Cristancho, A.6
Feng, D.7
Zhuo, D.8
Stoeckert, C.J.9
Liu, X.S.10
Lazar, M.A.11
-
29
-
-
34347345081
-
Whole-genome cartography of estrogen receptor alpha binding sites
-
Lin C.Y., Vega V.B., Thomsen J.S., Zhang T., Kong S.L., Xie M., Chiu K.P., Lipovich L., Barnett D.H., Stossi F., et al. Whole-genome cartography of estrogen receptor alpha binding sites. PLoS Genet. 2007, 3:e87.
-
(2007)
PLoS Genet.
, vol.3
-
-
Lin, C.Y.1
Vega, V.B.2
Thomsen, J.S.3
Zhang, T.4
Kong, S.L.5
Xie, M.6
Chiu, K.P.7
Lipovich, L.8
Barnett, D.H.9
Stossi, F.10
-
30
-
-
40849085514
-
FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription
-
Lupien M., Eeckhoute J., Meyer C.A., Wang Q., Zhang Y., Li W., Carroll J.S., Liu X.S., Brown M. FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription. Cell 2008, 132:958-970.
-
(2008)
Cell
, vol.132
, pp. 958-970
-
-
Lupien, M.1
Eeckhoute, J.2
Meyer, C.A.3
Wang, Q.4
Zhang, Y.5
Li, W.6
Carroll, J.S.7
Liu, X.S.8
Brown, M.9
-
31
-
-
33747072322
-
Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster
-
Moorman C., Sun L.V., Wang J., de Wit E., Talhout W., Ward L.D., Greil F., Lu X.J., White K.P., Bussemaker H.J., van Steensel B. Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 2006, 103:12027-12032.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 12027-12032
-
-
Moorman, C.1
Sun, L.V.2
Wang, J.3
de Wit, E.4
Talhout, W.5
Ward, L.D.6
Greil, F.7
Lu, X.J.8
White, K.P.9
Bussemaker, H.J.10
van Steensel, B.11
-
32
-
-
69249137029
-
Biological determinants of endocrine resistance in breast cancer
-
Musgrove E.A., Sutherland R.L. Biological determinants of endocrine resistance in breast cancer. Nat. Rev. Cancer 2009, 9:631-643.
-
(2009)
Nat. Rev. Cancer
, vol.9
, pp. 631-643
-
-
Musgrove, E.A.1
Sutherland, R.L.2
-
33
-
-
79953046943
-
A cis-regulatory map of the Drosophila genome
-
Nègre N., Brown C.D., Ma L., Bristow C.A., Miller S.W., Wagner U., Kheradpour P., Eaton M.L., Loriaux P., Sealfon R., et al. A cis-regulatory map of the Drosophila genome. Nature 2011, 471:527-531.
-
(2011)
Nature
, vol.471
, pp. 527-531
-
-
Nègre, N.1
Brown, C.D.2
Ma, L.3
Bristow, C.A.4
Miller, S.W.5
Wagner, U.6
Kheradpour, P.7
Eaton, M.L.8
Loriaux, P.9
Sealfon, R.10
-
34
-
-
79960050587
-
Targeting androgen receptor in estrogen receptor-negative breast cancer
-
Ni M., Chen Y., Lim E., Wimberly H., Bailey S.T., Imai Y., Rimm D.L., Liu X.S., Brown M. Targeting androgen receptor in estrogen receptor-negative breast cancer. Cancer Cell 2011, 20:119-131.
-
(2011)
Cancer Cell
, vol.20
, pp. 119-131
-
-
Ni, M.1
Chen, Y.2
Lim, E.3
Wimberly, H.4
Bailey, S.T.5
Imai, Y.6
Rimm, D.L.7
Liu, X.S.8
Brown, M.9
-
35
-
-
55749101777
-
Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis
-
Nielsen R., Pedersen T.A., Hagenbeek D., Moulos P., Siersbaek R., Megens E., Denissov S., Børgesen M., Francoijs K.J., Mandrup S., Stunnenberg H.G. Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis. Genes Dev. 2008, 22:2953-2967.
-
(2008)
Genes Dev.
, vol.22
, pp. 2953-2967
-
-
Nielsen, R.1
Pedersen, T.A.2
Hagenbeek, D.3
Moulos, P.4
Siersbaek, R.5
Megens, E.6
Denissov, S.7
Børgesen, M.8
Francoijs, K.J.9
Mandrup, S.10
Stunnenberg, H.G.11
-
36
-
-
42949095911
-
BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals
-
Poser I., Sarov M., Hutchins J.R., Hériché J.K., Toyoda Y., Pozniakovsky A., Weigl D., Nitzsche A., Hegemann B., Bird A.W., et al. BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals. Nat. Methods 2008, 5:409-415.
-
(2008)
Nat. Methods
, vol.5
, pp. 409-415
-
-
Poser, I.1
Sarov, M.2
Hutchins, J.R.3
Hériché, J.K.4
Toyoda, Y.5
Pozniakovsky, A.6
Weigl, D.7
Nitzsche, A.8
Hegemann, B.9
Bird, A.W.10
-
37
-
-
73249130316
-
Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation
-
Reddy T.E., Pauli F., Sprouse R.O., Neff N.F., Newberry K.M., Garabedian M.J., Myers R.M. Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation. Genome Res. 2009, 19:2163-2171.
-
(2009)
Genome Res.
, vol.19
, pp. 2163-2171
-
-
Reddy, T.E.1
Pauli, F.2
Sprouse, R.O.3
Neff, N.F.4
Newberry, K.M.5
Garabedian, M.J.6
Myers, R.M.7
-
38
-
-
78650331647
-
Identification of functional elements and regulatory circuits by Drosophila modENCODE
-
modENCODE Consortium
-
Roy S., Ernst J., Kharchenko P.V., Kheradpour P., Negre N., Eaton M.L., Landolin J.M., Bristow C.A., Ma L., Lin M.F., et al. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science 2010, 330:1787-1797. modENCODE Consortium.
-
(2010)
Science
, vol.330
, pp. 1787-1797
-
-
Roy, S.1
Ernst, J.2
Kharchenko, P.V.3
Kheradpour, P.4
Negre, N.5
Eaton, M.L.6
Landolin, J.M.7
Bristow, C.A.8
Ma, L.9
Lin, M.F.10
-
39
-
-
34249087361
-
Opposing effects of retinoic acid on cell growth result from alternate activation of two different nuclear receptors
-
Schug T.T., Berry D.C., Shaw N.S., Travis S.N., Noy N. Opposing effects of retinoic acid on cell growth result from alternate activation of two different nuclear receptors. Cell 2007, 129:723-733.
-
(2007)
Cell
, vol.129
, pp. 723-733
-
-
Schug, T.T.1
Berry, D.C.2
Shaw, N.S.3
Travis, S.N.4
Noy, N.5
-
40
-
-
44949162923
-
Overcoming retinoic acid-resistance of mammary carcinomas by diverting retinoic acid from PPARbeta/delta to RAR
-
Schug T.T., Berry D.C., Toshkov I.A., Cheng L., Nikitin A.Y., Noy N. Overcoming retinoic acid-resistance of mammary carcinomas by diverting retinoic acid from PPARbeta/delta to RAR. Proc. Natl. Acad. Sci. USA 2008, 105:7546-7551.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 7546-7551
-
-
Schug, T.T.1
Berry, D.C.2
Toshkov, I.A.3
Cheng, L.4
Nikitin, A.Y.5
Noy, N.6
-
41
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
Siepel A., Bejerano G., Pedersen J.S., Hinrichs A.S., Hou M., Rosenbloom K., Clawson H., Spieth J., Hillier L.W., Richards S., et al. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res. 2005, 15:1034-1050.
-
(2005)
Genome Res.
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
Rosenbloom, K.6
Clawson, H.7
Spieth, J.8
Hillier, L.W.9
Richards, S.10
-
42
-
-
79551587720
-
Cytoscape 2.8: new features for data integration and network visualization
-
Smoot M.E., Ono K., Ruscheinski J., Wang P.L., Ideker T. Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 2011, 27:431-432.
-
(2011)
Bioinformatics
, vol.27
, pp. 431-432
-
-
Smoot, M.E.1
Ono, K.2
Ruscheinski, J.3
Wang, P.L.4
Ideker, T.5
-
43
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Article3
-
Smyth G.K. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 2004, 3. Article3.
-
(2004)
Stat. Appl. Genet. Mol. Biol.
, vol.3
-
-
Smyth, G.K.1
-
44
-
-
2342640982
-
Activation of peroxisome proliferator-activated receptor delta stimulates the proliferation of human breast and prostate cancer cell lines
-
Stephen R.L., Gustafsson M.C., Jarvis M., Tatoud R., Marshall B.R., Knight D., Ehrenborg E., Harris A.L., Wolf C.R., Palmer C.N. Activation of peroxisome proliferator-activated receptor delta stimulates the proliferation of human breast and prostate cancer cell lines. Cancer Res. 2004, 64:3162-3170.
-
(2004)
Cancer Res.
, vol.64
, pp. 3162-3170
-
-
Stephen, R.L.1
Gustafsson, M.C.2
Jarvis, M.3
Tatoud, R.4
Marshall, B.R.5
Knight, D.6
Ehrenborg, E.7
Harris, A.L.8
Wolf, C.R.9
Palmer, C.N.10
-
45
-
-
27344435774
-
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A., Tamayo P., Mootha V.K., Mukherjee S., Ebert B.L., Gillette M.A., Paulovich A., Pomeroy S.L., Golub T.R., Lander E.S., Mesirov J.P. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. USA 2005, 102:15545-15550.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
-
46
-
-
0037137519
-
A gene-expression signature as a predictor of survival in breast cancer
-
van de Vijver M.J., He Y.D., van't Veer L.J., Dai H., Hart A.A., Voskuil D.W., Schreiber G.J., Peterse J.L., Roberts C., Marton M.J., et al. A gene-expression signature as a predictor of survival in breast cancer. N. Engl. J. Med. 2002, 347:1999-2009.
-
(2002)
N. Engl. J. Med.
, vol.347
, pp. 1999-2009
-
-
van de Vijver, M.J.1
He, Y.D.2
van't Veer, L.J.3
Dai, H.4
Hart, A.A.5
Voskuil, D.W.6
Schreiber, G.J.7
Peterse, J.L.8
Roberts, C.9
Marton, M.J.10
-
47
-
-
67650758019
-
Androgen receptor regulates a distinct transcription program in androgen-independent prostate cancer
-
Wang Q., Li W., Zhang Y., Yuan X., Xu K., Yu J., Chen Z., Beroukhim R., Wang H., Lupien M., et al. Androgen receptor regulates a distinct transcription program in androgen-independent prostate cancer. Cell 2009, 138:245-256.
-
(2009)
Cell
, vol.138
, pp. 245-256
-
-
Wang, Q.1
Li, W.2
Zhang, Y.3
Yuan, X.4
Xu, K.5
Yu, J.6
Chen, Z.7
Beroukhim, R.8
Wang, H.9
Lupien, M.10
-
48
-
-
66549085342
-
ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands
-
Welboren W.J., van Driel M.A., Janssen-Megens E.M., van Heeringen S.J., Sweep F.C., Span P.N., Stunnenberg H.G. ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands. EMBO J. 2009, 28:1418-1428.
-
(2009)
EMBO J.
, vol.28
, pp. 1418-1428
-
-
Welboren, W.J.1
van Driel, M.A.2
Janssen-Megens, E.M.3
van Heeringen, S.J.4
Sweep, F.C.5
Span, P.N.6
Stunnenberg, H.G.7
-
49
-
-
45949110405
-
Meta-analysis of human cancer microarrays reveals GATA3 is integral to the estrogen receptor alpha pathway
-
Wilson B.J., Giguère V. Meta-analysis of human cancer microarrays reveals GATA3 is integral to the estrogen receptor alpha pathway. Mol. Cancer 2008, 7:49.
-
(2008)
Mol. Cancer
, vol.7
, pp. 49
-
-
Wilson, B.J.1
Giguère, V.2
-
50
-
-
33644843376
-
Functional proteomics approach to investigate the biological activities of cDNAs implicated in breast cancer
-
Witt A.E., Hines L.M., Collins N.L., Hu Y.H., Gunawardane R.N., Moreira D., Raphael J., Jepson D., Koundinya M., Rolfs A., et al. Functional proteomics approach to investigate the biological activities of cDNAs implicated in breast cancer. J. Proteome Res. 2006, 5:599-610.
-
(2006)
J. Proteome Res.
, vol.5
, pp. 599-610
-
-
Witt, A.E.1
Hines, L.M.2
Collins, N.L.3
Hu, Y.H.4
Gunawardane, R.N.5
Moreira, D.6
Raphael, J.7
Jepson, D.8
Koundinya, M.9
Rolfs, A.10
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