-
1
-
-
0035176425
-
Stem cells from the Mammalian blastocyst
-
Rossant, J. (2001) Stem cells from the Mammalian blastocyst. Stem Cells 19, 477-482
-
(2001)
Stem Cells
, vol.19
, pp. 477-482
-
-
Rossant, J.1
-
2
-
-
80052739322
-
Genomic approaches to deconstruct pluripotency
-
Loh, Y. H., Yang, L., Yang, J. C., Li, H., and Collins., J. J., and Daley, G. Q. (2011) Genomic approaches to deconstruct pluripotency. Annu. Rev. Genomics Hum. Genet. 12, 165-185
-
(2011)
Annu. Rev. Genomics Hum. Genet.
, vol.12
, pp. 165-185
-
-
Loh, Y.H.1
Yang, L.2
Yang, J.C.3
Li, H.4
Collins, J.J.5
Daley, G.Q.6
-
3
-
-
80053145319
-
Discovering pluripotency: 30 years of mouse embryonic stem cells
-
Evans, M. (2011) Discovering pluripotency: 30 years of mouse embryonic stem cells. Nat. Rev. Mol. Cell Biol. 12, 680-686
-
(2011)
Nat. Rev. Mol. Cell Biol.
, vol.12
, pp. 680-686
-
-
Evans, M.1
-
4
-
-
8544279982
-
Ultrastructure of human embryonic stem cells and spontaneous and retinoic acid-induced differentiating cells
-
Park, S. H., and Park., S. H., Kook, M. C., Kim, E. Y., Park, S., and Lim, J. H. (2004) Ultrastructure of human embryonic stem cells and spontaneous and retinoic acid-induced differentiating cells. Ultrastruct. Pathol. 28, 229-238
-
(2004)
Ultrastruct. Pathol.
, vol.28
, pp. 229-238
-
-
Park, S.H.1
Park, S.H.2
Kook, M.C.3
Kim, E.Y.4
Park, S.5
Lim, J.H.6
-
5
-
-
42649094468
-
Global transcription in pluripotent embryonic stem cells
-
Efroni, S., Duttagupta, R., Cheng, J., Dehghani, H., and Hoeppner., D. J., Dash, C., Bazett-Jones, D. P., Le Grice, S., McKay, R. D., Buetow, K. H., Gingeras, T. R., Misteli, T., and Meshorer, E. (2008) Global transcription in pluripotent embryonic stem cells. Cell Stem Cell 2, 437-447
-
(2008)
Cell Stem Cell
, vol.2
, pp. 437-447
-
-
Efroni, S.1
Duttagupta, R.2
Cheng, J.3
Dehghani, H.4
Hoeppner, D.J.5
Dash, C.6
Bazett-Jones, D.P.7
Le Grice, S.8
McKay, R.D.9
Buetow, K.H.10
Gingeras, T.R.11
Misteli, T.12
Meshorer, E.13
-
6
-
-
77956272401
-
Global chromatin architecture reflects pluripotency and lineage commitment in the early mouse embryo
-
Ahmed, K., Dehghani, H., Rugg-Gunn, P., Fussner, E., Rossant, J., and Bazett-Jones, D. P. (2010) Global chromatin architecture reflects pluripotency and lineage commitment in the early mouse embryo. PLOS One 5, e10531
-
(2010)
PLOS One
, vol.5
-
-
Ahmed, K.1
Dehghani, H.2
Rugg-Gunn, P.3
Fussner, E.4
Rossant, J.5
Bazett-Jones, D.P.6
-
7
-
-
78650467973
-
Open chromatin in pluripotency and reprogramming
-
Gaspar-Maia, A., Alajem, A., Meshorer, E., and Ramalho-Santos, M. (2011) Open chromatin in pluripotency and reprogramming. Nat. Rev. Mol. Cell Biol. 12, 36-47
-
(2011)
Nat. Rev. Mol. Cell Biol.
, vol.12
, pp. 36-47
-
-
Gaspar-Maia, A.1
Alajem, A.2
Meshorer, E.3
Ramalho-Santos, M.4
-
8
-
-
35949000868
-
Open conformation chromatin and pluripotency
-
Niwa, H. (2007) Open conformation chromatin and pluripotency. Genes Dev. 21, 2671-2676
-
(2007)
Genes Dev.
, vol.21
, pp. 2671-2676
-
-
Niwa, H.1
-
9
-
-
77954819820
-
Chromatin plasticity and genome organization in pluripotent embryonic stem cells
-
Mattout, A., and Meshorer, E. (2010) Chromatin plasticity and genome organization in pluripotent embryonic stem cells. Curr. Opin. Cell Biol. 22, 334-341
-
(2010)
Curr. Opin. Cell Biol.
, vol.22
, pp. 334-341
-
-
Mattout, A.1
Meshorer, E.2
-
10
-
-
77956649353
-
Parallel gateways to pluripotency: Open chromatin in stem cells and development
-
Koh, F. M., Sachs, M., Guzman-Ayala, M., and Ramalho-Santos, M. (2010) Parallel gateways to pluripotency: open chromatin in stem cells and development. Curr. Opin. Genet. Dev. 20, 492-499
-
(2010)
Curr. Opin. Genet. Dev.
, vol.20
, pp. 492-499
-
-
Koh, F.M.1
Sachs, M.2
Guzman-Ayala, M.3
Ramalho-Santos, M.4
-
11
-
-
29744447772
-
Hyperdynamic plasticity of chromatin proteins in pluripotent embryonic stem cells
-
Meshorer, E., Yellajoshula, D., George, E., Scambler, P. J., and Brown., D. T., and Misteli, T. (2006) Hyperdynamic plasticity of chromatin proteins in pluripotent embryonic stem cells. Dev. Cell 10, 105-116
-
(2006)
Dev. Cell
, vol.10
, pp. 105-116
-
-
Meshorer, E.1
Yellajoshula, D.2
George, E.3
Scambler, P.J.4
Brown, D.T.5
Misteli, T.6
-
12
-
-
0344845415
-
BMP induction of id proteins suppresses differentiation and sustains embryonic stem cell self-renewal in collaboration with STAT3
-
Ying, Q. L., Nichols, J., Chambers, I., and Smith, A. (2003) BMP induction of Id proteins suppresses differentiation and sustains embryonic stem cell self-renewal in collaboration with STAT3. Cell 115, 281-292
-
(2003)
Cell
, vol.115
, pp. 281-292
-
-
Ying, Q.L.1
Nichols, J.2
Chambers, I.3
Smith, A.4
-
13
-
-
0038143611
-
Functional expression cloning of nanog, a pluripotency sustaining factor in embryonic stem cells
-
Chambers, I., Colby, D., Robertson, M., Nichols, J., Lee, S., Tweedie, S., and Smith, A. (2003) Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells. Cell 113, 643-655
-
(2003)
Cell
, vol.113
, pp. 643-655
-
-
Chambers, I.1
Colby, D.2
Robertson, M.3
Nichols, J.4
Lee, S.5
Tweedie, S.6
Smith, A.7
-
14
-
-
33646709444
-
Epigenetic regulation of stem cell differentiation
-
Wu, H., and Sun, Y. E. (2006) Epigenetic regulation of stem cell differentiation. Pediatr. Res. 59, 21R-25R
-
(2006)
Pediatr. Res.
, vol.59
-
-
Wu, H.1
Sun, Y.E.2
-
15
-
-
33645971932
-
The role of histone modifications in epigenetic transitions during normal and perturbed development
-
Kubicek, S., Schotta, G., Lachner, M., Sengupta, R., Kohlmaier, A., Perez-Burgos, L., Linderson, Y., and Martens., J. H., O'Sullivan, R. J., Fodor, B. D., Yonezawa, M., Peters, A. H., and Jenuwein, T. (2006) The role of histone modifications in epigenetic transitions during normal and perturbed development. Ernst Schering Res. Found Workshop, 57, 1-27
-
(2006)
Ernst Schering Res. Found Workshop
, vol.57
, pp. 1-27
-
-
Kubicek, S.1
Schotta, G.2
Lachner, M.3
Sengupta, R.4
Kohlmaier, A.5
Perez-Burgos, L.6
Linderson, Y.7
Martens, J.H.8
O'Sullivan, R.J.9
Fodor, B.D.10
Yonezawa, M.11
Peters, A.H.12
Jenuwein, T.13
-
16
-
-
44649139771
-
Molecular implementation and physiological roles for histone H3 lysine 4 (H3K4) methylation
-
Shilatifard, A. (2008) Molecular implementation and physiological roles for histone H3 lysine 4 (H3K4) methylation. Curr. Opin. Cell Biol. 20, 341-348
-
(2008)
Curr. Opin. Cell Biol.
, vol.20
, pp. 341-348
-
-
Shilatifard, A.1
-
17
-
-
76949107741
-
Histone H3 lysine 4 (H3K4) methylation in development and differentiation
-
Eissenberg, J. C., and Shilatifard, A. (2010) Histone H3 lysine 4 (H3K4) methylation in development and differentiation. Dev. Biol. 339, 240-249
-
(2010)
Dev. Biol.
, vol.339
, pp. 240-249
-
-
Eissenberg, J.C.1
Shilatifard, A.2
-
18
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
Barski, A., Cuddapah, S., Cui, K., Roh, T. Y., and Schones., D. E., Wang, Z., Wei, G., Chepelev, I., and Zhao, K. (2007) High-resolution profiling of histone methylations in the human genome. Cell 129, 823-837
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
19
-
-
70349335528
-
Mechanisms of transcriptional repression by histone lysine methylation
-
Hublitz, P., Albert, M., and Peters, A. H. (2009) Mechanisms of transcriptional repression by histone lysine methylation. Int. J. Dev. Biol. 53, 335-354
-
(2009)
Int. J. Dev. Biol.
, vol.53
, pp. 335-354
-
-
Hublitz, P.1
Albert, M.2
Peters, A.H.3
-
20
-
-
64549156935
-
Genome-wide reduction in H3K9 acetylation during human embryonic stem cell differentiation
-
Krejcí, J., Uhlírová, R., Galiová, G., Kozubek, S., Smigová, J., and Bártová, E. (2009) Genome-wide reduction in H3K9 acetylation during human embryonic stem cell differentiation. J. Cell Physiol. 219, 677-687
-
(2009)
J. Cell Physiol.
, vol.219
, pp. 677-687
-
-
Krejcí, J.1
Uhlírová, R.2
Galiová, G.3
Kozubek, S.4
Smigová, J.5
Bártová, E.6
-
21
-
-
33646872978
-
Chromatin signatures of pluripotent cell lines
-
Azuara, V., Perry, P., Sauer, S., Spivakov, M., Jørgensen, H. F., John, R. M., Gouti, M., Casanova, M., Warnes, G., Merkenschlager, M., and Fisher, A. G. (2006) Chromatin signatures of pluripotent cell lines. Nat. Cell Biol. 8, 532-538
-
(2006)
Nat. Cell Biol.
, vol.8
, pp. 532-538
-
-
Azuara, V.1
Perry, P.2
Sauer, S.3
Spivakov, M.4
Jørgensen, H.F.5
John, R.M.6
Gouti, M.7
Casanova, M.8
Warnes, G.9
Merkenschlager, M.10
Fisher, A.G.11
-
22
-
-
72849134873
-
Transcriptional competence in pluripotency
-
Ram, E. V., and Meshorer, E. (2009) Transcriptional competence in pluripotency. Genes Dev. 23, 2793-2798
-
(2009)
Genes Dev.
, vol.23
, pp. 2793-2798
-
-
Ram, E.V.1
Meshorer, E.2
-
23
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein, B. E., and Mikkelsen., T. S., Xie, X., Kamal, M., Huebert, D. J., Cuff, J., Fry, B., Meissner, A., Wernig, M., Plath, K., Jaenisch, R., Wagschal, A., Feil, R., Schreiber, S. L., and Lander, E. S. (2006) A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125, 315-326
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
Cuff, J.6
Fry, B.7
Meissner, A.8
Wernig, M.9
Plath, K.10
Jaenisch, R.11
Wagschal, A.12
Feil, R.13
Schreiber, S.L.14
Lander, E.S.15
-
24
-
-
34548434716
-
Whole-genome analysis of histone H3 lysine4 and lysine 27 methylation in human embryonic stem cells
-
Pan, G., Tian, S., Nie, J., Yang, C., Ruotti, V., Wei, H., Jonsdottir, G. A., Stewart, R., and Thomson, J. A. (2007) Whole-genome analysis of histone H3 lysine4 and lysine 27 methylation in human embryonic stem cells. Cell stem cell 1, 299-312
-
(2007)
Cell Stem Cell
, vol.1
, pp. 299-312
-
-
Pan, G.1
Tian, S.2
Nie, J.3
Yang, C.4
Ruotti, V.5
Wei, H.6
Jonsdottir, G.A.7
Stewart, R.8
Thomson, J.A.9
-
25
-
-
34548424709
-
Whole-genome mapping of histone H3 lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells
-
Zhao, X. D., Han, X., Chew, J. L., Liu, J., and Chiu., K. P., Choo, A., Orlov, Y. L., and Sung., W. K., Shahab, A., Kuznetsov, V. A., Bourque, G., Oh, S., Ruan, Y., Ng, H. H., and Wei, C. L. (2007) Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells. Cell Stem Cell 1, 286-298
-
(2007)
Cell Stem Cell
, vol.1
, pp. 286-298
-
-
Zhao, X.D.1
Han, X.2
Chew, J.L.3
Liu, J.4
Chiu, K.P.5
Choo, A.6
Orlov, Y.L.7
Sung, W.K.8
Shahab, A.9
Kuznetsov, V.A.10
Bourque, G.11
Oh, S.12
Ruan, Y.13
Ng, H.H.14
Wei, C.L.15
-
26
-
-
68949164755
-
Chd1 regulates open chromatin and pluripotency of embryonic stem cells
-
Gaspar-Maia, A., Alajem, A., Polesso, F., Sridharan, R., Mason, M. J., Heidersbach, A., Ramalho-Santos, J., McManus, M. T., Plath, K., Meshorer, E., and Ramalho-Santos, M. (2009) Chd1 regulates open chromatin and pluripotency of embryonic stem cells. Nature 460, 863-868
-
(2009)
Nature
, vol.460
, pp. 863-868
-
-
Gaspar-Maia, A.1
Alajem, A.2
Polesso, F.3
Sridharan, R.4
Mason, M.J.5
Heidersbach, A.6
Ramalho-Santos, J.7
McManus, M.T.8
Plath, K.9
Meshorer, E.10
Ramalho-Santos, M.11
-
27
-
-
35348982301
-
Jmjd1a and jmjd2c histone H3 lys 9 demethylases regulate self-renewal in embryonic stem cells
-
Loh, Y. H., Zhang, W., Chen, X., George, J., and Ng, H. H. (2007) Jmjd1a and Jmjd2c histone H3 Lys 9 demethylases regulate self-renewal in embryonic stem cells. Genes Dev. 21, 2545-2557
-
(2007)
Genes Dev.
, vol.21
, pp. 2545-2557
-
-
Loh, Y.H.1
Zhang, W.2
Chen, X.3
George, J.4
Ng, H.H.5
-
28
-
-
79958252915
-
Chromatin connections to plu-ripotency and cellular reprogramming
-
Orkin, S. H., and Hochedlinger, K. (2011) Chromatin connections to plu-ripotency and cellular reprogramming. Cell 145, 835-850
-
(2011)
Cell
, vol.145
, pp. 835-850
-
-
Orkin, S.H.1
Hochedlinger, K.2
-
29
-
-
77957344798
-
CHD7 targets active gene enhancer elements to modulate ES cell-specific gene expression
-
Schnetz, M. P., Handoko, L., Akhtar-Zaidi, B., Bartels, C. F., and Pereira., C. F., Fisher, A. G., Adams, D. J., Flicek, P., and Crawford., G. E., Laframboise, T., Tesar, P., Wei, C. L., and Scacheri, P. C. (2010) CHD7 targets active gene enhancer elements to modulate ES cell-specific gene expression. PLoS Genet. 6, e1001023
-
(2010)
PLoS Genet.
, vol.6
-
-
Schnetz, M.P.1
Handoko, L.2
Akhtar-Zaidi, B.3
Bartels, C.F.4
Pereira, C.F.5
Fisher, A.G.6
Adams, D.J.7
Flicek, P.8
Crawford, G.E.9
Laframboise, T.10
Tesar, P.11
Wei, C.L.12
Scacheri, P.C.13
-
30
-
-
33747195353
-
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
-
Takahashi, K., and Yamanaka, S. (2006) Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell 126, 663-676
-
(2006)
Cell
, vol.126
, pp. 663-676
-
-
Takahashi, K.1
Yamanaka, S.2
-
31
-
-
77956214711
-
Myc represses primitive endoderm differentiation in pluripotent stem cells
-
Smith, K. N., and Singh., A. M., and Dalton, S. (2010) Myc represses primitive endoderm differentiation in pluripotent stem cells. Cell Stem Cell 7, 343-354
-
(2010)
Cell Stem Cell
, vol.7
, pp. 343-354
-
-
Smith, K.N.1
Singh, A.M.2
Dalton, S.3
-
32
-
-
70350302617
-
Myc-regulated microRNAs attenuate embryonic stem cell differentiation
-
Lin, C. H., and Jackson., A. L., Guo, J., Linsley, P. S., and Eisenman, R. N. (2009) Myc-regulated microRNAs attenuate embryonic stem cell differentiation. EMBO J. 28, 3157-3170
-
(2009)
EMBO J.
, vol.28
, pp. 3157-3170
-
-
Lin, C.H.1
Jackson, A.L.2
Guo, J.3
Linsley, P.S.4
Eisenman, R.N.5
-
33
-
-
77950462621
-
Mixed lineage leukemia: Histone H3 lysine 4 methyltransferases from yeast to human
-
Malik, S., and Bhaumik, S. R. (2010) Mixed lineage leukemia: histone H3 lysine 4 methyltransferases from yeast to human. FEBS J. 277, 1805-1821
-
(2010)
FEBS J.
, vol.277
, pp. 1805-1821
-
-
Malik, S.1
Bhaumik, S.R.2
-
34
-
-
33746849256
-
Regulation of MLL1 H3K4 methyl-transferase activity by its core components
-
Dou, Y., and Milne., T. A., Ruthenburg, A. J., Lee, S., Lee, J. W., and Verdine., G. L., Allis, C. D., and Roeder, R. G. (2006) Regulation of MLL1 H3K4 methyl-transferase activity by its core components. Nat. Struct. Mol. Biol. 13, 713-719
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 713-719
-
-
Dou, Y.1
Milne, T.A.2
Ruthenburg, A.J.3
Lee, S.4
Lee, J.W.5
Verdine, G.L.6
Allis, C.D.7
Roeder, R.G.8
-
35
-
-
34547122520
-
PTIP associates with MLL3-and MLL4-containing histone H3 lysine 4 methyl-transferase complex
-
Cho, Y. W., Hong, T., Hong, S., Guo, H., Yu, H., Kim, D., Guszczynski, T., and Dressler., G. R., Copeland, T. D., Kalkum, M., and Ge, K. (2007) PTIP associates with MLL3-and MLL4-containing histone H3 lysine 4 methyl-transferase complex. J. Biol. Chem. 282, 20395-20406
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 20395-20406
-
-
Cho, Y.W.1
Hong, T.2
Hong, S.3
Guo, H.4
Yu, H.5
Kim, D.6
Guszczynski, T.7
Dressler, G.R.8
Copeland, T.D.9
Kalkum, M.10
Ge, K.11
-
36
-
-
84862816537
-
Structure of the SPRY domain of human ash2l and its interactions with RbBP5 and DPY30
-
Chen, Y., Cao, F., Wan, B., Dou, Y., and Lei, M. (2012) Structure of the SPRY domain of human Ash2L and its interactions with RbBP5 and DPY30. Cell Res. 22, 598-602
-
(2012)
Cell Res.
, vol.22
, pp. 598-602
-
-
Chen, Y.1
Cao, F.2
Wan, B.3
Dou, Y.4
Lei, M.5
-
37
-
-
33748364351
-
Molecular regulation of H3K4 trimethylation by ASH2L, a shared subunit of MLL complexes
-
Steward, M. M., and Lee., J. S., O'Donovan, A., Wyatt, M., Bernstein, B. E., and Shilatifard, A. (2006) Molecular regulation of H3K4 trimethylation by ASH2L, a shared subunit of MLL complexes. Nat. Struct. Mol. Biol. 13, 852-854
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 852-854
-
-
Steward, M.M.1
Lee, J.S.2
O'Donovan, A.3
Wyatt, M.4
Bernstein, B.E.5
Shilatifard, A.6
-
38
-
-
77952573731
-
Ash2l interacts with tbx1 and is required during early embryogenesis
-
Stoller, J. Z., Huang, L., Tan, C. C., Huang, F., and Zhou., D. D., Yang, J., Gelb, B. D., and Epstein, J. A. (2010) Ash2l interacts with Tbx1 and is required during early embryogenesis. Exp. Biol. Med. 235, 569-576
-
(2010)
Exp. Biol. Med.
, vol.235
, pp. 569-576
-
-
Stoller, J.Z.1
Huang, L.2
Tan, C.C.3
Huang, F.4
Zhou, D.D.5
Yang, J.6
Gelb, B.D.7
Epstein, J.A.8
-
39
-
-
79961027510
-
Crystal structure ofth e N-terminal region of human ash2l shows a winged-helix motif involved in DNA binding
-
Chen, Y., Wan, B., Wang, K. C., Cao, F., Yang, Y., Protacio, A., Dou, Y., and Chang., H. Y., and Lei, M. (2011) Crystal structure ofth e N-terminal region of human Ash2L shows a winged-helix motif involved in DNA binding. EMBO Rep. 12, 797-803
-
(2011)
EMBO Rep.
, vol.12
, pp. 797-803
-
-
Chen, Y.1
Wan, B.2
Wang, K.C.3
Cao, F.4
Yang, Y.5
Protacio, A.6
Dou, Y.7
Chang, H.Y.8
Lei, M.9
-
40
-
-
79960059319
-
Crystal structure of the trithorax group protein ASH2L reveals a forkhead-like DNA binding domain
-
Sarvan, S., Avdic, V., Tremblay, V., Chaturvedi, C.P., Zhang, P., Lanouette, S., Blais, A., Brunzelle, J. S., Brand, M., and Couture, J. F. (2011) Crystal structure of the trithorax group protein ASH2L reveals a forkhead-like DNA binding domain. Nat. Struct. Mol. Biol. 18, 857-859
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 857-859
-
-
Sarvan, S.1
Avdic, V.2
Tremblay, V.3
Chaturvedi, C.P.4
Zhang, P.5
Lanouette, S.6
Blais, A.7
Brunzelle, J.S.8
Brand, M.9
Couture, J.F.10
-
41
-
-
36249027156
-
Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing
-
Sims, R. J., 3rd, Millhouse, S., Chen, C. F., Lewis, B. A., Erdjument-Bromage, H., Tempst, P., Manley, J. L., and Reinberg, D. (2007) Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing. Mol. Cell 28, 665-676
-
(2007)
Mol. Cell
, vol.28
, pp. 665-676
-
-
Sims III, R.J.1
Millhouse, S.2
Chen, C.F.3
Lewis, B.A.4
Erdjument-Bromage, H.5
Tempst, P.6
Manley, J.L.7
Reinberg, D.8
-
42
-
-
44649086468
-
Nanog and oct4 associate with unique transcriptional repression complexes in embryonic stem cells
-
Liang, J., Wan, M., Zhang, Y., Gu, P., Xin, H., Jung, S. Y., Qin, J., Wong, J., Cooney, A. J., Liu, D., and Songyang, Z. (2008) Nanog and Oct4 associate with unique transcriptional repression complexes in embryonic stem cells. Nat. Cell Biol. 10, 731-739
-
(2008)
Nat. Cell Biol.
, vol.10
, pp. 731-739
-
-
Liang, J.1
Wan, M.2
Zhang, Y.3
Gu, P.4
Xin, H.5
Jung, S.Y.6
Qin, J.7
Wong, J.8
Cooney, A.J.9
Liu, D.10
Songyang, Z.11
-
43
-
-
79960112520
-
Human telomeric proteins occupy selective interstitial sites
-
Yang, D., Xiong, Y., Kim, H., He, Q., Li, Y., Chen, R., and Songyang, Z. (2011) Human telomeric proteins occupy selective interstitial sites. Cell Res. 21, 1013-1027
-
(2011)
Cell Res.
, vol.21
, pp. 1013-1027
-
-
Yang, D.1
Xiong, Y.2
Kim, H.3
He, Q.4
Li, Y.5
Chen, R.6
Songyang, Z.7
-
44
-
-
67650711615
-
SOAP2: An improved ultrafast tool for short read alignment
-
Li, R., Yu, C., Li, Y., Lam, T. W., and Yiu., S. M., Kristiansen, K., and Wang, J. (2009) SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 25, 1966-1967
-
(2009)
Bioinformatics
, vol.25
, pp. 1966-1967
-
-
Li, R.1
Yu, C.2
Li, Y.3
Lam, T.W.4
Yiu, S.M.5
Kristiansen, K.6
Wang, J.7
-
45
-
-
53849146020
-
Model-based analysis of ChIP-seq (MACS)
-
Zhang, Y., Liu, T., Meyer, C. A., Eeckhoute, J., and Johnson., D. S., Bernstein, B. E., Nusbaum, C., Myers, R. M., Brown, M., Li, W., and Liu, X. S. (2008) Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9, R137
-
(2008)
Genome Biol.
, vol.9
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
Liu, X.S.11
-
46
-
-
0038005018
-
DAVID: Database for annotation, visualization, and integrated discovery
-
Dennis, G., Jr., Sherman, B. T., Hosack, D. A., Yang, J., Gao, W., Lane, H. C., and Lempicki, R. A. (2003) DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol. 4, P3
-
(2003)
Genome Biol.
, vol.4
-
-
Dennis Jr., G.1
Sherman, B.T.2
Hosack, D.A.3
Yang, J.4
Gao, W.5
Lane, H.C.6
Lempicki, R.A.7
-
47
-
-
33747823564
-
MEME: Discovering and analyzing DNA and protein sequence motifs
-
Bailey, T. L., Williams, N., Misleh, C., and Li, W. W. (2006) MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic. Acids Res. 34, W369-373
-
(2006)
Nucleic. Acids Res.
, vol.34
-
-
Bailey, T.L.1
Williams, N.2
Misleh, C.3
Li, W.W.4
-
48
-
-
33745865934
-
Chromatin in pluripotent embryonic stem cells and differentiation
-
Meshorer, E., and Misteli, T. (2006) Chromatin in pluripotent embryonic stem cells and differentiation. Nat. Rev. Mol. Cell Biol. 7, 540-546
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, pp. 540-546
-
-
Meshorer, E.1
Misteli, T.2
-
49
-
-
77950866717
-
Chromatin signature of embryonic pluripotency is established during genome activation
-
Vastenhouw, N. L., Zhang, Y., Woods, I. G., Imam, F., Regev, A., Liu, X. S., Rinn, J., and Schier, A. F. (2010) Chromatin signature of embryonic pluripotency is established during genome activation. Nature 464, 922-926
-
(2010)
Nature
, vol.464
, pp. 922-926
-
-
Vastenhouw, N.L.1
Zhang, Y.2
Woods, I.G.3
Imam, F.4
Regev, A.5
Liu, X.S.6
Rinn, J.7
Schier, A.F.8
-
50
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen, T. S., Ku, M., Jaffe, D. B., Issac, B., Lieberman, E., Giannoukos, G., Alvarez, P., Brockman, W., Kim, T. K., Koche, R. P., Lee, W., Mendenhall, E., O'Donovan, A., Presser, A., Russ, C., Xie, X., Meissner, A., Wernig, M., Jaenisch, R., Nusbaum, C., Lander, E. S., and Bernstein, B. E. (2007) Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448, 553-560
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
Giannoukos, G.6
Alvarez, P.7
Brockman, W.8
Kim, T.K.9
Koche, R.P.10
Lee, W.11
Mendenhall, E.12
O'Donovan, A.13
Presser, A.14
Russ, C.15
Xie, X.16
Meissner, A.17
Wernig, M.18
Jaenisch, R.19
Nusbaum, C.20
Lander, E.S.21
Bernstein, B.E.22
more..
-
51
-
-
48649091905
-
Polycomb repressive complex 2 is dispensable for maintenance of embryonic stem cell pluripotency
-
Chamberlain, S. J., Yee, D., and Magnuson, T. (2008) Polycomb repressive complex 2 is dispensable for maintenance of embryonic stem cell pluripotency. Stem Cells 26, 1496-1505
-
(2008)
Stem Cells
, vol.26
, pp. 1496-1505
-
-
Chamberlain, S.J.1
Yee, D.2
Magnuson, T.3
-
52
-
-
80053217575
-
ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity
-
Young, M. D., and Willson., T. A., Wakefield, M. J., Trounson, E., Hilton, D. J., and Blewitt., M. E., Oshlack, A., and Majewski, I. J. (2011) ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity. Nucleic Acids Res. 39, 7415-7427
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 7415-7427
-
-
Young, M.D.1
Willson, T.A.2
Wakefield, M.J.3
Trounson, E.4
Hilton, D.J.5
Blewitt, M.E.6
Oshlack, A.7
Majewski, I.J.8
-
53
-
-
78649509903
-
An ash2l/RbBP5 heterodimer stimulates the MLL1 methyltransferase activity through coordinated substrate interactions with the MLL1 SET domain
-
Cao, F., Chen, Y., Cierpicki, T., Liu, Y., Basrur, V., Lei, M., and Dou, Y. (2010) An Ash2L/RbBP5 heterodimer stimulates the MLL1 methyltransferase activity through coordinated substrate interactions with the MLL1 SET domain. PloS one 5, e14102
-
(2010)
PloS One
, vol.5
-
-
Cao, F.1
Chen, Y.2
Cierpicki, T.3
Liu, Y.4
Basrur, V.5
Lei, M.6
Dou, Y.7
-
54
-
-
78651240842
-
Structural and biochemical insights into MLL1 core complex assembly
-
Avdic, V., Zhang, P., Lanouette, S., Groulx, A., Tremblay, V., Brunzelle, J., and Couture, J. F. (2011) Structural and biochemical insights into MLL1 core complex assembly. Structure 19, 101-108
-
(2011)
Structure
, vol.19
, pp. 101-108
-
-
Avdic, V.1
Zhang, P.2
Lanouette, S.3
Groulx, A.4
Tremblay, V.5
Brunzelle, J.6
Couture, J.F.7
-
55
-
-
79954414897
-
Wdr5 mediates self-renewal and reprogramming via the embryonic stem cell core transcriptional network
-
Ang, Y. S., and Tsai., S. Y., Lee, D. F., Monk, J., Su, J., Ratnakumar, K., Ding, J., Ge, Y., Darr, H., Chang, B., Wang, J., Rendl, M., Bernstein, E., Schaniel, C, and Lemischka, I. R. (2011) Wdr5 mediates self-renewal and reprogramming via the embryonic stem cell core transcriptional network. Cell 145, 183-197
-
(2011)
Cell
, vol.145
, pp. 183-197
-
-
Ang, Y.S.1
Tsai, S.Y.2
Lee, D.F.3
Monk, J.4
Su, J.5
Ratnakumar, K.6
Ding, J.7
Ge, Y.8
Darr, H.9
Chang, B.10
Wang, J.11
Rendl, M.12
Bernstein, E.13
Schaniel, C.14
Lemischka, I.R.15
-
56
-
-
36849043170
-
P38 MAPK signaling regulates recruitment of ash2l-containing methyltransferase complexes to specific genes during differentiation
-
Rampalli, S., Li, L., Mak, E., Ge, K., Brand, M., Tapscott, S.J., and Dilworth, F. J. (2007) p38 MAPK signaling regulates recruitment of Ash2L-containing methyltransferase complexes to specific genes during differentiation. Nat. Struct. Mol. Biol. 14, 1150-1156
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 1150-1156
-
-
Rampalli, S.1
Li, L.2
Mak, E.3
Ge, K.4
Brand, M.5
Tapscott, S.J.6
Dilworth, F.J.7
-
57
-
-
44949150107
-
Transcription factor ap2s associates with ash2l and ALR, a trithorax family histone methyltransferase, to activate hoxc8 transcription
-
Tan, C. C, Sindhu, K. V., Li, S., Nishio, H., Stoller, J. Z., Oishi, K., Puttreddy, S., Lee, T. J., Epstein, J. A., Walsh, M. J., and Gelb, B. D. (2008) Transcription factor Ap2S associates with Ash2l and ALR, a trithorax family histone methyltransferase, to activate Hoxc8 transcription. Proc. Natl. Acad. Sci. U.S.A. 105, 7472-7477
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 7472-7477
-
-
Tan, C.C.1
Sindhu, K.V.2
Li, S.3
Nishio, H.4
Stoller, J.Z.5
Oishi, K.6
Puttreddy, S.7
Lee, T.J.8
Epstein, J.A.9
Walsh, M.J.10
Gelb, B.D.11
-
58
-
-
34547776310
-
Activator-mediated recruitment of the MLL2 methyltransferase complex to the β-globin locus
-
Demers, C, Chaturvedi, C P., Ranish, J. A., Juban, G., Lai, P., Morle, F., Aebersold, R., Dilworth, F. J., Groudine, M., and Brand, M. (2007) Activator-mediated recruitment of the MLL2 methyltransferase complex to the β-globin locus. Mol. Cell 27, 573-584
-
(2007)
Mol. Cell
, vol.27
, pp. 573-584
-
-
Demers, C.1
Chaturvedi, C.P.2
Ranish, J.A.3
Juban, G.4
Lai, P.5
Morle, F.6
Aebersold, R.7
Dilworth, F.J.8
Groudine, M.9
Brand, M.10
-
59
-
-
70350686180
-
SetDB1 contributes to repression of genes encoding developmental regulators and maintenance of ES cell state
-
Bilodeau, S., and Kagey., M. H., Frampton, G. M., Rahl, P. B., and Young, R. A. (2009) SetDB1 contributes to repression of genes encoding developmental regulators and maintenance of ES cell state. Genes Dev. 23, 2484-2489
-
(2009)
Genes Dev.
, vol.23
, pp. 2484-2489
-
-
Bilodeau, S.1
Kagey, M.H.2
Frampton, G.M.3
Rahl, P.B.4
Young, R.A.5
-
60
-
-
33746773659
-
Dissecting self-renewal in stem cells with RNA interference
-
Ivanova, N., Dobrin, R., Lu, R., Kotenko, I., Levorse, J., DeCoste, C, Schafer, X., Lun, Y., and Lemischka, I. R. (2006) Dissecting self-renewal in stem cells with RNA interference. Nature 442, 533-538
-
(2006)
Nature
, vol.442
, pp. 533-538
-
-
Ivanova, N.1
Dobrin, R.2
Lu, R.3
Kotenko, I.4
Levorse, J.5
DeCoste, C.6
Schafer, X.7
Lun, Y.8
Lemischka, I.R.9
-
61
-
-
79951711112
-
Role for dpy-30 in ES cell-fate specification by regulation of H3K4 methylation within bivalent domains
-
Jiang, H., Shukla, A., Wang, X., Chen, W. Y., and Bernstein., B. E., and Roeder, R. G. (2011) Role for Dpy-30 in ES cell-fate specification by regulation of H3K4 methylation within bivalent domains. Cell 144, 513-525
-
(2011)
Cell
, vol.144
, pp. 513-525
-
-
Jiang, H.1
Shukla, A.2
Wang, X.3
Chen, W.Y.4
Bernstein, B.E.5
Roeder, R.G.6
-
62
-
-
64149122182
-
Genomic distribution of CHD7 on chromatin tracks H3K4 methylation patterns
-
Schnetz, M. P., Bartels, C F., Shastri, K., Balasubramanian, D., Zentner, G. E., Balaji, R., Zhang, X., Song, L., Wang, Z., Laframboise, T., Crawford, G. E., and Scacheri, P. C (2009) Genomic distribution of CHD7 on chromatin tracks H3K4 methylation patterns. Genome Res. 19, 590-601
-
(2009)
Genome Res.
, vol.19
, pp. 590-601
-
-
Schnetz, M.P.1
Bartels, C.F.2
Shastri, K.3
Balasubramanian, D.4
Zentner, G.E.5
Balaji, R.6
Zhang, X.7
Song, L.8
Wang, Z.9
Laframboise, T.10
Crawford, G.E.11
Scacheri, P.C.12
-
63
-
-
70649100427
-
Gene regulation and epigenetic remodeling in murine embryonic stem cells by c-myc
-
Lin, C. H., Lin, C, Tanaka, H., and Fero., M. L., and Eisenman, R. N. (2009) Gene regulation and epigenetic remodeling in murine embryonic stem cells by c-Myc. PloS One 4, e7839
-
(2009)
PloS One
, vol.4
-
-
Lin, C.H.1
Lin, C.2
Tanaka, H.3
Fero, M.L.4
Eisenman, R.N.5
-
64
-
-
77957757417
-
A myc network accounts for similarities between embryonic stem and cancer cell transcription programs
-
Kim, J., and Woo., A. J., Chu, J., Snow, J. W., Fujiwara, Y., and Kim., C. G., Cantor, A. B., and Orkin, S. H. (2010) A Myc network accounts for similarities between embryonic stem and cancer cell transcription programs. Cell 143, 313-324
-
(2010)
Cell
, vol.143
, pp. 313-324
-
-
Kim, J.1
Woo, A.J.2
Chu, J.3
Snow, J.W.4
Fujiwara, Y.5
Kim, C.G.6
Cantor, A.B.7
Orkin, S.H.8
-
65
-
-
70450160004
-
Systems-level dynamic analyses of fate change in murine embryonic stem cells
-
Lu, R., Markowetz, F., Unwin, R. D., and Leek., J. T., Airoldi, E. M., MacArthur, B. D., Lachmann, A., Rozov, R., Ma'ayan, A., Boyer, L. A., Troyanskaya, O. G., Whetton, A. D., and Lemischka, I. R. (2009) Systems-level dynamic analyses of fate change in murine embryonic stem cells. Nature 462, 358-362
-
(2009)
Nature
, vol.462
, pp. 358-362
-
-
Lu, R.1
Markowetz, F.2
Unwin, R.D.3
Leek, J.T.4
Airoldi, E.M.5
MacArthur, B.D.6
Lachmann, A.7
Rozov, R.8
Ma'ayan, A.9
Boyer, L.A.10
Troyanskaya, O.G.11
Whetton, A.D.12
Lemischka, I.R.13
-
66
-
-
58249086425
-
Understanding the words of chromatin regulation
-
Wu, J. I., Lessard, J., and Crabtree, G. R. (2009) Understanding the words of chromatin regulation. Cell 136, 200-206
-
(2009)
Cell
, vol.136
, pp. 200-206
-
-
Wu, J.I.1
Lessard, J.2
Crabtree, G.R.3
|