Genetic variation among panton-valentine leukocidin-encoding bacteriophages in staphylococcus aureus clonal complex 30 strains

Journal of Clinical Microbiology

Volumn 51, Issue 3, 2013, Pages 914-919

  Chen, Liang ^a   Chavda, Kalyan D ^a   Solanki, Mihir ^a   Mediavilla, José R ^a   Mathema, Barun ^a   Schlievert, Patrick M ^b   Kreiswirth, Barry N ^a  

^a PUBLIC HEALTH RESEARCH INSTITUTE   (United States)

^b UNIVERSITY OF IOWA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PANTON VALENTINE LEUKOCIDIN;

ARTICLE; BACTERIAL STRAIN; BACTERIOPHAGE; CHROMOSOME INSERTION; CLONAL COMPLEX 30; CLONE; GENE SEQUENCE; GENETIC VARIABILITY; LUKSF PV GENE; NONHUMAN; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; STAPHYLOCOCCUS AUREUS;

BACTERIAL TOXINS; CHROMOSOMES, BACTERIAL; EXOTOXINS; GENETIC VARIATION; HUMANS; LEUKOCIDINS; METHICILLIN-RESISTANT STAPHYLOCOCCUS AUREUS; STAPHYLOCOCCUS PHAGES; VIRION; VIRUS INTEGRATION;

EID: 84874029179     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.03015-12     Document Type: Article

References (35)

1. Robinson DA, Kearns AM, Holmes A, Morrison D, Grundmann H, Edwards G, O'Brien FG, Tenover FC, McDougal LK, Monk AB, Enright MC. 2005. Re-emergence of early pandemic Staphylococcus aureus as a community-acquired methicillin-resistant clone. Lancet 365:1256-1258
2. McAdam PR, Templeton KE, Edwards GF, Holden MT, Feil EJ, Aanensen DM, Bargawi HJ, Spratt BG, Bentley SD, Parkhill J, Enright MC, Holmes A, Girvan EK, Godfrey PA, Feldgarden M, Kearns AM, Rambaut A, Robinson DA, Fitzgerald JR. 2012. Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus. Proc. Natl. Acad. Sci. U. S. A. 109: 9107-9112
3. Chambers HF, Deleo FR. 2009. Waves of resistance: Staphylococcus aureus in the antibiotic era. Nat. Rev. Microbiol. 7:629-641
4. DeLeo FR, Kennedy AD, Chen L, Bubeck Wardenburg J, Kobayashi SD, Mathema B, Braughton KR, Whitney AR, Villaruz AE, Martens CA, Porcella SF, McGavin MJ, Otto M, Musser JM, Kreiswirth BN. 2011. Molecular differentiation of historic phage-type 80/81 and contemporary epidemic Staphylococcus aureus. Proc. Natl. Acad. Sci. U. S. A. 108:18091-18096
5. Panton PN, Valentine FCO. 1932. Staphylococcal toxin. Lancet 219:506-508
6. Kaneko J, Kimura T, Narita S, Tomita T, Kamio Y. 1998. Complete nucleotide sequence and molecular characterization of the temperate staphylococcal bacteriophage -PVL carrying Panton-Valentine leukocidin genes. Gene 215:57-67
7. Ma XX, Ito T, Chongtrakool P, Hiramatsu K. 2006. Predominance of clones carrying Panton-Valentine leukocidin genes among methicillinresistant Staphylococcus aureus strains isolated in Japanese hospitals from 1979 to 1985. J. Clin. Microbiol. 44:4515-4527
8. Zhang M, Ito T, Li S, Jin J, Takeuchi F, Lauderdale TL, Higashide M, Hiramatsu K. 2011. Identification of the third type of PVL phage in ST59 methicillin-resistant Staphylococcus aureus (MRSA) strains. FEMS Microbiol. Lett. 323:20-28
9. Ma XX, Ito T, Kondo Y, Cho M, Yoshizawa Y, Kaneko J, Katai A, Higashiide M, Li S, Hiramatsu K. 2008. Two different Panton-Valentine leukocidin phage lineages predominate in Japan. J. Clin. Microbiol. 46: 3246-3258
10. Baba T, Takeuchi F, Kuroda M, Yuzawa H, Aoki K, Oguchi A, Nagai Y, Iwama N, Asano K, Naimi T, Kuroda H, Cui L, Yamamoto K, Hiramatsu K. 2002. Genome and virulence determinants of high virulence community-acquired MRSA. Lancet 359:1819-1827
11. Narita S, Kaneko J, Chiba J, Piemont Y, Jarraud S, Etienne J, Kamio Y. 2001. Phage conversion of Panton-Valentine leukocidin in Staphylococcus aureus: molecular analysis of a PVL-converting phage, -SLT. Gene 268: 195-206
12. Diep BA, Gill SR, Chang RF, Phan TH, Chen JH, Davidson MG, Lin F, Lin J, Carleton HA, Mongodin EF, Sensabaugh GF, Perdreau-Remington F. 2006. Complete genome sequence of USA300, an epidemic clone of community-acquired methicillin-resistant Staphylococcus aureus. Lancet 367:731-739
13. Takano T, Higuchi W, Otsuka T, Baranovich T, Enany S, Saito K, Isobe H, Dohmae S, Ozaki K, Takano M, Iwao Y, Shibuya M, Okubo T, Yabe S, Shi D, Reva I, Teng LJ, Yamamoto T. 2008. Novel characteristics of community-acquired methicillin-resistant Staphylococcus aureus strains belonging to multilocus sequence type 59 in Taiwan. Antimicrob. Agents Chemother. 52:837-845
14. O'Hara FP, Guex N, Word JM, Miller LA, Becker JA, Walsh SL, Scangarella NE, West JM, Shawar RM, Amrine-Madsen H. 2008. A geographic variant of the Staphylococcus aureus Panton-Valentine leukocidin toxin and the origin of community-associated methicillin-resistant S. aureus USA300. J. Infect. Dis. 197:187-194
15. Li X, Sun J, Wu D, Wang L, Yang Y, Wang C, Liu L, Zhao C, Du P, Yu S, Shen X. 2012. Panton-Valentine leukocidin gene sequence variation and phage in methicillin-resistant and methicillin-susceptible Staphylococcus aureus from children in mainland China. Microbiol. Immunol. 56:155-162
16. Boakes E, Kearns AM, Ganner M, Perry C, Hill RL, Ellington MJ. 2011. Distinct bacteriophages encoding Panton-Valentine leukocidin (PVL) among international methicillin-resistant Staphylococcus aureus clones harboring PVL. J. Clin. Microbiol. 49:684-692
17. Brown ML, O'Hara FP, Close NM, Mera RM, Miller LA, Suaya JA, Amrine-Madsen H. 2012. Prevalence and sequence variation of Panton-Valentine leukocidin in methicillin-resistant and methicillin-susceptible staphylococcus aureus strains in the United States. J. Clin. Microbiol. 50: 86-90
18. Otter JA, Kearns AM, French GL, Ellington MJ. 2010. Panton-Valentine leukocidin-encoding bacteriophage and gene sequence variation in community-associated methicillin-resistant Staphylococcus aureus. Clin. Microbiol. Infect. 16:68-73
19. Wolter DJ, Tenover FC, Goering RV. 2007. Allelic variation in genes encoding Panton-Valentine leukocidin from community-associated Staphylococcus aureus. Clin. Microbiol. Infect. 13:827-830
20. Coombs GW, Goering RV, Chua KY, Monecke S, Howden BP, Stinear TP, Ehricht R, O'Brien FG, Christiansen KJ. 2012. The molecular epidemiology of the highly virulent ST93 Australian community Staphylococcus aureus strain. PLoS One 7:e43037. doi:10.1371/journal.pone.0043037
21. Boakes E, Kearns AM, Ganner M, Perry C, Warner M, Hill RL, Ellington MJ. 2011. Molecular diversity within clonal complex 22 methicillin-resistant Staphylococcus aureus encoding Panton-Valentine leukocidin in England and Wales. Clin. Microbiol. Infect. 17:140-145
22. Chen L, Mediavilla JR, Smyth DS, Chavda KD, Ionescu R, Roberts RB, Robinson DA, Kreiswirth BN. 2010. Identification of a novel transposon (Tn6072) and a truncated SCCmec element in methicillin-resistant Staphylococcus aureus ST239. Antimicrob. Agents Chemother. 54:3347-3354
23. Enright MC, Day NP, Davies CE, Peacock SJ, Spratt BG. 2000. Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus. J. Clin. Microbiol. 38:1008-1015
24. Mathema B, Mediavilla J, Kreiswirth BN. 2008. Sequence analysis of the variable number tandem repeat in Staphylococcus aureus protein A gene: spa typing. Methods Mol. Biol. 431:285-305
25. Chen L, Mediavilla JR, Oliveira DC, Willey BM, de Lencastre H, Kreiswirth BN. 2009. Multiplex real-time PCR for rapid staphylococcal cassette chromosome mec (SCCmec) typing. J. Clin. Microbiol. 47:3692-3706
26. Milheirico C, Oliveira DC, de Lencastre H. 2007. Multiplex PCR strategy for subtyping the staphylococcal cassette chromosome mec type IV in methicillin-resistant Staphylococcus aureus: "SCCmec IV multiplex." J. Antimicrob. Chemother. 60:42-48
27. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. 2007. CLUSTALWand CLUSTAL X version 2.0. Bioinformatics 23:2947-2948
28. Clement M, Posada D, Crandall KA. 2000. TCS: a computer program to estimate gene genealogies. Mol. Ecol. 9:1657-1659
29. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum-parsimony methods. Mol. Biol. Evol. 28:2731-2739
30. Hasegawa M, Kishino H, Yano T. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174
31. Mediavilla JR, Chen L, Mathema B, Kreiswirth BN. 2012. Global epidemiology of community-associated methicillin-resistant Staphylococcus aureus (CA-MRSA). Curr. Opin. Microbiol. 15:588-595
32. Herold BC, Immergluck LC, Maranan MC, Lauderdale DS, Gaskin RE, Boyle-Vavra S, Leitch CD, Daum RS. 1998. Community-acquired methicillin- resistant Staphylococcus aureus in children with no identified predisposing risk. JAMA 279:593-598
33. Dufour P, Gillet Y, Bes M, Lina G, Vandenesch F, Floret D, Etienne J, Richet H. 2002. Community-acquired methicillin-resistant Staphylococcus aureus infections in France: emergence of a single clone that produces Panton-Valentine leukocidin. Clin. Infect. Dis. 35:819-824
34. Vandenesch F, Naimi T, Enright MC, Lina G, Nimmo GR, Heffernan H, Liassine N, Bes M, Greenland T, Reverdy ME, Etienne J. 2003. Community-acquired methicillin-resistant Staphylococcus aureus carrying Panton-Valentine leukocidin genes: worldwide emergence. Emerg. Infect. Dis. 9:978-984
35. Diep BA, Sensabaugh GF, Somboonna N, Carleton HA, Perdreau-Remington F. 2004. Widespread skin and soft-tissue infections due to two methicillin- resistant Staphylococcus aureus strains harboring the genes for Panton-Valentine leucocidin. J. Clin. Microbiol. 42:2080-2084.