메뉴 건너뛰기




Volumn 101, Issue 5, 2009, Pages 648-656

What is the value of ITS sequence data in Colletotrichum systematics and species diagnosis? A case study using the falcate-spored graminicolous Colletotrichum group

Author keywords

Barcoding; Colletotrichum; GenBank; ITS; Phylogenetic analysis; Species diagnosis

Indexed keywords

BOOTSTRAPPING; DATABASE; FUNGUS; GRASS; HOST-PATHOGEN INTERACTION; MORPHOLOGY; PHYLOGENETICS; TAXONOMY;

EID: 70349572496     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/08-231     Document Type: Article
Times cited : (106)

References (46)
  • 2
    • 0001293027 scopus 로고
    • Die arten der gattung Colletotrichum Cda
    • Arx JA v. 1957. Die arten der gattung Colletotrichum Cda. Phytopath Z 29:413-468.
    • (1957) Phytopath Z , vol.29 , pp. 413-468
    • Arx, J.A.v.1
  • 3
    • 85015523385 scopus 로고    scopus 로고
    • First report of anthracnose of Crupina vulgaris caused by a Colletotrichum sp. in Greece
    • Berner DK, Eskandari FM, Rossman AY, Aime MC, Kashefi J. 2004. First report of anthracnose of Crupina vulgaris caused by a Colletotrichum sp. in Greece. Plant Dis 88: 1161.
    • (2004) Plant Dis , vol.88 , pp. 1161
    • Berner, D.K.1    Eskandari, F.M.2    Rossman, A.Y.3    Aime, M.C.4    Kashefi, J.5
  • 4
    • 60549096797 scopus 로고    scopus 로고
    • First report of Colletotrichum dracaenophilum on Dracaena sanderiana in Bulgaria
    • Bobev SG, Castlebury LA, Rossman AY. 2008. First report of Colletotrichum dracaenophilum on Dracaena sanderiana in Bulgaria. Plant Dis 92:173.
    • (2008) Plant Dis , vol.92 , pp. 173
    • Bobev, S.G.1    Castlebury, L.A.2    Rossman, A.Y.3
  • 5
    • 40449137040 scopus 로고    scopus 로고
    • Domain II hairpin structure in ITS1 sequences as an aid in differentiating recently evolved animal and plant pathogenic fungi
    • Bridge PD, Schlitt T, Cannon PF, Buddie AG, Baker M, Borman AM. 2008. Domain II hairpin structure in ITS1 sequences as an aid in differentiating recently evolved animal and plant pathogenic fungi. Mycopathologia 166:1-16.
    • (2008) Mycopathologia , vol.166 , pp. 1-16
    • Bridge, P.D.1    Schlitt, T.2    Cannon, P.F.3    Buddie, A.G.4    Baker, M.5    Borman, A.M.6
  • 7
    • 0001876897 scopus 로고    scopus 로고
    • Linking the past, present, and future of Colletotrichum systematics
    • Prusky D, Freeman S, Dickman MB, eds. St. Paul, Minnesota: APS Press
    • Cannon PF, Bridge PD, Monte E. 2000. Linking the past, present, and future of Colletotrichum systematics. In: Prusky D, Freeman S, Dickman MB, eds. Colletotrichum: Host specificity, pathology, and host-pathogen interaction. St. Paul, Minnesota: APS Press. p 1-20.
    • (2000) Colletotrichum: Host specificity, pathology, and host-pathogen interaction , pp. 1-20
    • Cannon, P.F.1    Bridge, P.D.2    Monte, E.3
  • 8
    • 47649128649 scopus 로고    scopus 로고
    • The typification of Colletotrichum gloeosporioides
    • Cannon PF, Buddie AG, Bridge PD. 2008. The typification of Colletotrichum gloeosporioides. Mycotaxon 104:189-204.
    • (2008) Mycotaxon , vol.104 , pp. 189-204
    • Cannon, P.F.1    Buddie, A.G.2    Bridge, P.D.3
  • 10
    • 29744445146 scopus 로고    scopus 로고
    • Phylogenetic relationships and fungicide sensitivities of Colletotrichum graminicola isolates from turfgrass in North America
    • Crouch JA. Clarke BB, Hillman BI. 2005. Phylogenetic relationships and fungicide sensitivities of Colletotrichum graminicola isolates from turfgrass in North America. Int Turfgrass Soc Res J 10:186-195.
    • (2005) Int Turfgrass Soc Res J , vol.10 , pp. 186-195
    • Crouch, J.A.1    Clarke, B.B.2    Hillman, B.I.3
  • 11
    • 29744460507 scopus 로고    scopus 로고
    • Unraveling evolutionary relationships among the divergent lineages of Colletotrichum causing anthracnose disease in turfgrass and corn
    • Crouch JA. Clarke BB, Hillman BI. 2006. Unraveling evolutionary relationships among the divergent lineages of Colletotrichum causing anthracnose disease in turfgrass and corn. Phytopathol 96:46-60.
    • (2006) Phytopathol , vol.96 , pp. 46-60
    • Crouch, J.A.1    Clarke, B.B.2    Hillman, B.I.3
  • 12
    • 70349562004 scopus 로고    scopus 로고
    • Systematic analysis of the falcate-spored graminicolous Colletotrichum and a description of six new species from warm season grasses
    • Crouch JA. Clarke BB, White JF Jr, Hillman BI. 2009a. Systematic analysis of the falcate-spored graminicolous Colletotrichum and a description of six new species from warm season grasses. Mycologia 101:717-732.
    • (2009) Mycologia , vol.101 , pp. 717-732
    • Crouch, J.A.1    Clarke, B.B.2    White J.F., Jr.3    Hillman, B.I.4
  • 13
    • 38849134091 scopus 로고    scopus 로고
    • The evolution of transposon repeat-induced point mutation in the genome of Colletotrichum cereale: Reconciling sex, recombination and homoplasy in an "asexual" pathogen
    • Crouch JA. Glasheen BM, Giunta MA, Clarke BB, Hillman BI. 2008a. The evolution of transposon repeat-induced point mutation in the genome of Colletotrichum cereale: Reconciling sex, recombination and homoplasy in an "asexual" pathogen. Fungal Genet Biol 45:190-206.
    • (2008) Fungal Genet Biol , vol.45 , pp. 190-206
    • Crouch, J.A.1    Glasheen, B.M.2    Giunta, M.A.3    Clarke, B.B.4    Hillman, B.I.5
  • 14
    • 46849100667 scopus 로고    scopus 로고
    • Patterns of diversity in populations of the turfgrass pathogen Colletotrichum cereale as revealed by transposon fingerprint profiles
    • Crouch JA. Glasheen BM, Uddin W, Clarke BB, Hillman BI. 2008b. Patterns of diversity in populations of the turfgrass pathogen Colletotrichum cereale as revealed by transposon fingerprint profiles. Crop Sci 48:1203-1210.
    • (2008) Crop Sci , vol.48 , pp. 1203-1210
    • Crouch, J.A.1    Glasheen, B.M.2    Uddin, W.3    Clarke, B.B.4    Hillman, B.I.5
  • 15
    • 78650759118 scopus 로고    scopus 로고
    • First report of anthracnose disease of ornamental feather reed grass (Calamagrostis x acutifolia 'Karl Foerster') caused by Colletotrichum cereale
    • Crouch JA. Inguagiato JC. 2009b. First report of anthracnose disease of ornamental feather reed grass (Calamagrostis x acutifolia 'Karl Foerster') caused by Colletotrichum cereale. Plant Dis 93:203.
    • (2009) Plant Dis , vol.93 , pp. 203
    • Crouch, J.A.1    Inguagiato, J.C.2
  • 16
    • 58149099415 scopus 로고    scopus 로고
    • Phylogenetic and population genetic divergence correspond with habitat for the pathogen Colletotrichum cereale and allied taxa across diverse grass communities
    • Crouch JA. Tredway LP, Clarke BB, Hillman BI. 2009b. Phylogenetic and population genetic divergence correspond with habitat for the pathogen Colletotrichum cereale and allied taxa across diverse grass communities. Mol Ecol 18:123-135.
    • (2009) Mol Ecol , vol.18 , pp. 123-135
    • Crouch, J.A.1    Tredway, L.P.2    Clarke, B.B.3    Hillman, B.I.4
  • 17
    • 25444514233 scopus 로고    scopus 로고
    • Using mating-type gene sequences for improved phylogenetic resolution of Colletotrichum species complexes
    • Du M, Schardl CL, Nuckles EM, Vaillancourt L. 2005. Using mating-type gene sequences for improved phylogenetic resolution of Colletotrichum species complexes. Mycologia 97:641-58.
    • (2005) Mycologia , vol.97 , pp. 641-658
    • Du, M.1    Schardl, C.L.2    Nuckles, E.M.3    Vaillancourt, L.4
  • 19
    • 0034797528 scopus 로고    scopus 로고
    • Ribosomal DNA sequence comparisons of Colletotrichum graminicola from turfgrasses and other hosts
    • Hsiang T, Goodwin PH. 2001. Ribosomal DNA sequence comparisons of Colletotrichum graminicola from turfgrasses and other hosts. Eur J Plant Pathol 107:593-599.
    • (2001) Eur J Plant Pathol , vol.107 , pp. 593-599
    • Hsiang, T.1    Goodwin, P.H.2
  • 20
    • 0034849408 scopus 로고    scopus 로고
    • MrBayes: Bayesian inference of phylogenetic trees
    • Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 21
    • 51849128372 scopus 로고    scopus 로고
    • First report of Glomerella cingulata (Colleto-Colletotrichum gloeosporioides) causing anthracnose and tip dieback of Lygodium microphyllum and L. japonicum in Australia
    • Ireland KB, Haji NA, Noor M, Aitken EAB, Schmidt S, Volin JC. 2008. First report of Glomerella cingulata (Colleto-Colletotrichum gloeosporioides) causing anthracnose and tip dieback of Lygodium microphyllum and L. japonicum in Australia. Plant Dis 92:1369.
    • (2008) Plant Dis , vol.92 , pp. 1369
    • Ireland, K.B.1    Haji, N.A.2    Noor, M.3    Aitken, E.A.B.4    Schmidt, S.5    Volin, J.C.6
  • 22
    • 60549098476 scopus 로고    scopus 로고
    • First report of anthracnose disease of black pepper (Piper nigrum) caused by an unknown species of Colletotrichum
    • Jayakumar V, Kannamma Usha Rani G, Amaresan N, Rajalakshmi S. 2009. First report of anthracnose disease of black pepper (Piper nigrum) caused by an unknown species of Colletotrichum. Plant Dis 93:199.
    • (2009) Plant Dis , vol.93 , pp. 199
    • Jayakumar, V.1    Kannamma Usha Rani, G.2    Amaresan, N.3    Rajalakshmi, S.4
  • 24
    • 58149163195 scopus 로고    scopus 로고
    • A Glomerella species phylogenetically related to Colletotrichum acutatum on Norway maple in Massachussetts
    • LoBuglio KF, Pfister DH. 2008. A Glomerella species phylogenetically related to Colletotrichum acutatum on Norway maple in Massachussetts. Mycologia 100:710-715.
    • (2008) Mycologia , vol.100 , pp. 710-715
    • LoBuglio, K.F.1    Pfister, D.H.2
  • 25
    • 1542318865 scopus 로고    scopus 로고
    • Diversity and molecular relationships of endophytic Colletotrichum isolates from the Iwokrama Forest Reserve, Guyana
    • Lu G, Cannon PF, Reid A, Simmons CM. 2004. Diversity and molecular relationships of endophytic Colletotrichum isolates from the Iwokrama Forest Reserve, Guyana. Mycol Res 108:53-63.
    • (2004) Mycol Res , vol.108 , pp. 53-63
    • Lu, G.1    Cannon, P.F.2    Reid, A.3    Simmons, C.M.4
  • 26
    • 0037465315 scopus 로고    scopus 로고
    • Morphological and molecular characterization of Colletotrichum boninense sp. nov. from Japan
    • Moriwaki J, Sato T, Tsukiboshi T. 2003. Morphological and molecular characterization of Colletotrichum boninense sp. nov. from Japan. Mycoscience 44:47-53.
    • (2003) Mycoscience , vol.44 , pp. 47-53
    • Moriwaki, J.1    Sato, T.2    Tsukiboshi, T.3
  • 27
    • 25444471705 scopus 로고    scopus 로고
    • Grouping of Colletotrichum species in Japan based on rDNA sequences
    • Moriwaki J, Tsukiboshi T, Sato T. 2002. Grouping of Colletotrichum species in Japan based on rDNA sequences. J Gen Plant Pathol 68:307-320.
    • (2002) J Gen Plant Pathol , vol.68 , pp. 307-320
    • Moriwaki, J.1    Tsukiboshi, T.2    Sato, T.3
  • 28
    • 36049004436 scopus 로고    scopus 로고
    • Taxonomic Reliability of DNA Sequences in Public Sequence Databases: A Fungal Perspective
    • doi:10.1371/journal.pone.0000059
    • Nilsson RH, Ryberg M, Kristiansson E, Abarenkov K, Larsson K-H, Koljalg U. 2006. Taxonomic Reliability of DNA Sequences in Public Sequence Databases: A Fungal Perspective. PLoS ONE 1(1):e59. doi:10.1371/journal.pone.0000059.
    • (2006) PLoS ONE , vol.1 , Issue.1
    • Nilsson, R.H.1    Ryberg, M.2    Kristiansson, E.3    Abarenkov, K.4    Larsson, K.-H.5    Koljalg, U.6
  • 29
    • 0034707210 scopus 로고    scopus 로고
    • Evolution of gene families
    • Ohta T. 2000. Evolution of gene families. Gene 259:45-52.
    • (2000) Gene , vol.259 , pp. 45-52
    • Ohta, T.1
  • 30
    • 70449495787 scopus 로고    scopus 로고
    • The North American cranberry fruit rot fungal community: a systematic overview using morphological and phylogenetic affinities
    • (In press) doi:10.1111/j.1365-3059.2009.02120
    • Polashock JJ, Caruso F, Oudemans PV, McManus P, Crouch JA. 2009. The North American cranberry fruit rot fungal community: a systematic overview using morphological and phylogenetic affinities. Plant Pathol (In press) doi:10.1111/j.1365-3059.2009.02120.
    • (2009) Plant Pathol
    • Polashock, J.J.1    Caruso, F.2    Oudemans, P.V.3    McManus, P.4    Crouch, J.A.5
  • 31
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D, Crandall KA. 1998. Modeltest: Testing the model of DNA substitution. Bioinformatics 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 32
    • 0029104361 scopus 로고
    • rDNA sequence analysis confirms the distinction between Colletotrichum graminicola and C. sublineolum
    • Sherriff C, Whelan MJ, Arnold GM, Bailey JA. 1995. rDNA sequence analysis confirms the distinction between Colletotrichum graminicola and C. sublineolum. Mycol Res 99:475-478.
    • (1995) Mycol Res , vol.99 , pp. 475-478
    • Sherriff, C.1    Whelan, M.J.2    Arnold, G.M.3    Bailey, J.A.4
  • 33
    • 0028303787 scopus 로고
    • Ribosomal DNA sequence analysis reveals new species groupings in the genus Colletotrichum
    • Sherriff C, Whelan MJ, Arnold GM, Lafay JF, Brygoo Y, Bailey JA. 1994. Ribosomal DNA sequence analysis reveals new species groupings in the genus Colletotrichum. Exp Mycol 18: 121-138.
    • (1994) Exp Mycol , vol.18 , pp. 121-138
    • Sherriff, C.1    Whelan, M.J.2    Arnold, G.M.3    Lafay, J.F.4    Brygoo, Y.5    Bailey, J.A.6
  • 34
    • 0030160169 scopus 로고    scopus 로고
    • Phylogeny and systematics of 18 Colletotrichum species based on ribosomal DNA spacer sequences
    • Sreenivasaprasad S, Mills PR, Meehan BM, Brown AE. 1996. Phylogeny and systematics of 18 Colletotrichum species based on ribosomal DNA spacer sequences. Genome 39:499-512.
    • (1996) Genome , vol.39 , pp. 499-512
    • Sreenivasaprasad, S.1    Mills, P.R.2    Meehan, B.M.3    Brown, A.E.4
  • 36
    • 0001166722 scopus 로고
    • Development of fruitifications in Colletotrichum graminicola (Ces) Wils. and related species
    • Sutton BC. 1966. Development of fruitifications in Colletotrichum graminicola (Ces.) Wils. and related species. Can J Bot 44:887-897.
    • (1966) Can J Bot , vol.44 , pp. 887-897
    • Sutton, B.C.1
  • 37
    • 0000798368 scopus 로고
    • The appressoria of Colletotrichum graminicola and C. falcatum
    • Sutton BC. 1968. The appressoria of Colletotrichum graminicola and C. falcatum. Can J Bot 46:873-876.
    • (1968) Can J Bot , vol.46 , pp. 873-876
    • Sutton, B.C.1
  • 39
    • 0002526512 scopus 로고
    • The genus Glomerella and its anamorph Colletotrichum
    • Bailey JA, Jeger MJ, eds. Wallingford, U.K.: CAB International
    • Sutton BC. 1992. The genus Glomerella and its anamorph Colletotrichum. In: Bailey JA, Jeger MJ, eds. Colletotrichum: Biology, pathology and control. Wallingford, U.K.: CAB International. p 1-26.
    • (1992) Colletotrichum: Biology, pathology and control , pp. 1-26
    • Sutton, B.C.1
  • 42
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties, and matrix choice
    • Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties, and matrix choice. Nucleic Acids Res 22:4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 43
    • 72449134223 scopus 로고    scopus 로고
    • First report of leaf spot caused by Colletotrichum cf. linicola on field bindweed in Turkey
    • Tunali B, Berner DK, Dubin HJ. 2008. First report of leaf spot caused by Colletotrichum cf. linicola on field bindweed in Turkey. Plant Dis 92:316.
    • (2008) Plant Dis , vol.92 , pp. 316
    • Tunali, B.1    Berner, D.K.2    Dubin, H.J.3
  • 44
    • 63049115867 scopus 로고    scopus 로고
    • Diversity and evolutionary origins of fungi associated with seeds of a neotropical pioneer tree: a case study for analysing fungal environmental samples
    • U'ren JM, Dalling JW, Gallery RE, Maddison DR, Davis EC, Gibson CM, Arnold AE. 2009. Diversity and evolutionary origins of fungi associated with seeds of a neotropical pioneer tree: a case study for analysing fungal environmental samples. Mycol Res 113:432-449.
    • (2009) Mycol Res , vol.113 , pp. 432-449
    • U'ren, J.M.1    Dalling, J.W.2    Gallery, R.E.3    Maddison, D.R.4    Davis, E.C.5    Gibson, C.M.6    Arnold, A.E.7
  • 45
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. San Diego: Academic Press
    • White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR Protocols: A Guide to Methods and Applications. San Diego: Academic Press. p 315- 322.
    • (1990) PCR Protocols: A Guide to Methods and Applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.3    Taylor, J.4
  • 46
    • 55549124893 scopus 로고    scopus 로고
    • First report of Colletotrichum cereale causing anthracnose foliar blight of creeping bentgrass in Mississippi and Alabama
    • Young JR, Tomaso-Peterson M, Crouch JA. 2008. First report of Colletotrichum cereale causing anthracnose foliar blight of creeping bentgrass in Mississippi and Alabama. Plant Dis 92:1475.
    • (2008) Plant Dis , vol.92 , pp. 1475
    • Young, J.R.1    Tomaso-Peterson, M.2    Crouch, J.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.