The Maternal Transcriptome of the Crustacean Parhyale hawaiensis Is Inherited Asymmetrically to Invariant Cell Lineages of the Ectoderm and Mesoderm

PLoS ONE

Volumn 8, Issue 2, 2013, Pages

  Nestorov, Peter ^a,c   Battke, Florian ^b   Levesque, Mitchell P ^a,d   Gerberding, Matthias ^a  

^a MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY   (Germany)

^b UNIVERSITY OF TÜBINGEN   (Germany)

^c FRIEDRICH MIESCHER INSTITUTE FOR BIOMEDICAL RESEARCH   (Switzerland)

^d UNIVERSITY HOSPITAL ZURICH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

RNA; TRANSCRIPTOME;

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CELL FATE; CELL LINEAGE; CELLULAR DISTRIBUTION; CONTROLLED STUDY; CRUSTACEA; DEVELOPMENTAL STAGE; ECTODERM; EMBRYO; EMBRYO DEVELOPMENT; EXPRESSED SEQUENCE TAG; GERM LAYER; MESODERM; MICROARRAY ANALYSIS; NONHUMAN; PARHYALE HAWAIENSIS; RNA ANALYSIS; RNA TRANSCRIPTION; ZYGOTE;

AMPHIPODA; ANIMALS; CELL LINEAGE; ECTODERM; FEMALE; MESODERM; PREGNANCY; TRANSCRIPTOME;

EID: 84873895492     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0056049     Document Type: Article

References (43)

1. Anderson KV, Nusslein-Volhard C, (1984) Information for the dorsal-ventral pattern of the Drosophila embryo is stored as maternal mRNA. Nature 311: 223-227.
2. Roth S, Stein D, Nusslein-Volhard C, (1989) A gradient of nuclear localization of the dorsal protein determines dorsoventral pattern in the Drosophila embryo. Cell 59: 1189-1202.
3. Lecuyer E, Yoshida H, Parthasarathy N, Alm C, Babak T, et al. (2007) Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function. Cell 131: 174-187.
4. Stathopoulos A, Van Drenth M, Erives A, Markstein M, Levine M, (2002) Whole-genome analysis of dorsal-ventral patterning in the Drosophila embryo. Cell 111: 687-701.
5. Abzhanov A, Extavour CG, Groover A, Hodges SA, Hoekstra HE, et al. (2008) Are we there yet? Tracking the development of new model systems. Trends Genet 24: 353-360.
6. McGregor AP, Hilbrant M, Pechmann M, Schwager EE, Prpic NM, et al. (2008) Cupiennius salei and Achaearanea tepidariorum: Spider models for investigating evolution and development. Bioessays 30: 487-498.
7. Browne WE, Price AL, Gerberding M, Patel NH, (2005) Stages of embryonic development in the amphipod crustacean, Parhyale hawaiensis. Genesis 42: 124-149.
8. Fonseca RN, Lynch JA, Roth S, (2009) Evolution of axis formation: mRNA localization, regulatory circuits and posterior specification in non-model arthropods. Curr Opin Genet Dev 19: 404-411.
9. Wilson MJ, Abbott H, Dearden PK, (2011) The evolution of oocyte patterning in insects: multiple cell-signaling pathways are active during honeybee oogenesis and are likely to play a role in axis patterning. Evolution & development 13: 127-137.
10. Gerberding M, Browne WE, Patel NH, (2002) Cell lineage analysis of the amphipod crustacean Parhyale hawaiensis reveals an early restriction of cell fates. Development 129: 5789-5801.
11. Extavour CG, (2005) The fate of isolated blastomeres with respect to germ cell formation in the amphipod crustacean Parhyale hawaiensis. Dev Biol 277: 387-402.
12. Lawrence PA, Levine M, (2006) Mosaic and regulative development: two faces of one coin. Curr Biol 16: R236-239.
13. Price AL, Patel NH, (2008) Investigating divergent mechanisms of mesoderm development in arthropods: the expression of Ph-twist and Ph-mef2 in Parhyale hawaiensis. J Exp Zool B Mol Dev Evol 310: 24-40.
14. Browne WE, Schmid BG, Wimmer EA, Martindale MQ, (2006) Expression of otd orthologs in the amphipod crustacean, Parhyale hawaiensis. Dev Genes Evol 216: 581-595.
15. Kizil GO, Havemann J, Gerberding M (2008) Germ cells in the crustacean Parhyale hawaiensis depend on Vasa protein for their maintenance but not for their formation. Dev Biol.
16. Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, et al. (2011) The ecoresponsive genome of Daphnia pulex. Science 331: 555-561.
17. Parchem RJ, Poulin F, Stuart AB, Amemiya CT, Patel NH, (2010) BAC library for the amphipod crustacean, Parhyale hawaiensis. Genomics 95: 261-267.
18. Zeng V, Villanueva KE, Ewen-Campen BS, Alwes F, Browne WE, et al. (2011) De novo assembly and characterization of a maternal and developmental transcriptome for the emerging model crustacean Parhyale hawaiensis. BMC genomics 12: 581.
19. Blythe MJ, Malla S, Everall R, Shih YH, Lemay V, et al. (2012) High through-put sequencing of the Parhyale hawaiensis mRNAs and microRNAs to aid comparative developmental studies. PloS one 7: e33784.
20. Baroux C, Autran D, Gillmor CS, Grimanelli D, Grossniklaus U (2009) The Maternal to Zygotic Transition in Animals and Plants. Cold Spring Harb Symp Quant Biol.
21. Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, et al. (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676.
22. Banu S, Honore N, Saint-Joanis B, Philpott D, Prevost MC, et al. (2002) Are the PE-PGRS proteins of Mycobacterium tuberculosis variable surface antigens? Mol Microbiol 44: 9-19.
23. Lorenzini DM, da Silva PI Jr, Fogaca AC, Bulet P, Daffre S, (2003) Acanthoscurrin: a novel glycine-rich antimicrobial peptide constitutively expressed in the hemocytes of the spider Acanthoscurria gomesiana. Dev Comp Immunol 27: 781-791.
24. Macara IG, Mili S, (2008) Polarity and differential inheritance-universal attributes of life? Cell 135: 801-812.
25. Baugh LR, Hill AA, Slonim DK, Brown EL, Hunter CP, (2003) Composition and dynamics of the Caenorhabditis elegans early embryonic transcriptome. Development 130: 889-900.
26. McClintock TS, Derby CD, (2006) Shelling out for genomics. Genome Biol 7: 312.
27. Yamada L, Kobayashi K, Satou Y, Satoh N, (2005) Microarray analysis of localization of maternal transcripts in eggs and early embryos of the ascidian, Ciona intestinalis. Dev Biol 284: 536-550.
28. Yatsu J, Hayashi M, Mukai M, Arita K, Shigenobu S, et al. (2008) Maternal RNAs encoding transcription factors for germline-specific gene expression in Drosophila embryos. Int J Dev Biol 52: 913-923.
29. Zhang C, Klymkowsky MW, (2007) The Sox axis, Nodal signaling, and germ layer specification. Differentiation; research in biological diversity 75: 536-545.
30. Kofron M, Birsoy B, Houston D, Tao Q, Wylie C, et al. (2007) Wnt11/beta-catenin signaling in both oocytes and early embryos acts through LRP6-mediated regulation of axin. Development 134: 503-513.
31. Cuykendall TN, Houston DW, (2009) Vegetally localized Xenopus trim36 regulates cortical rotation and dorsal axis formation. Development 136: 3057-3065.
32. St Johnston D, (2005) Moving messages: the intracellular localization of mRNAs. Nat Rev Mol Cell Biol 6: 363-375.
33. Richter S, Scholtz G, (2001) Phylogenetic analysis of the Malacostraca (Crustacea). J Zool Syst Evol Research 39: 113-136.
34. Price AL, Modrell MS, Hannibal RL, Patel NH (2009) Mesoderm and ectoderm lineages in the crustacean Parhyale hawaiensis display intra-germ layer compensation. Dev Biol.
35. Price AL, Patel NH, (2008) Investigating divergent mechanisms of mesoderm development in arthropods: the expression of Ph-twist and Ph-mef2 in Parhyale hawaiensis. J Exp Zoolog B Mol Dev Evol 310: 24-40.
36. Patel NH, Martin-Blanco E, Coleman KG, Poole SJ, Ellis MC, et al. (1989) Expression of engrailed proteins in arthropods, annelids, and chordates. Cell 58: 955-968.
37. Sambrook J (2000) Molecular Cloning: A Laboratory Manual: Cold Spring Harbor Laboratory.
38. Huang X, Madan A, (1999) CAP3: A DNA sequence assembly program. Genome Res 9: 868-877.
39. Weese D, Emde AK, Rausch T, Doring A, Reinert K, (2009) RazerS-fast read mapping with sensitivity control. Genome Res 19: 1646-1654.
40. Smyth GK (2005) Limma: linear models for microarray data, in: Bioinformatics and Computational Biology Solutions using R and Bioconductor; Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W, editors. New York: Springer.
41. Smyth GK, (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article3.
42. Battke F, Symons S, Nieselt K, (2010) Mayday-integrative analytics for expression data. BMC Bioinformatics 11: 121.
43. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.