-
2
-
-
77956629111
-
Focus issue: systems analysis of protein phosphorylation
-
Gough NR, Foley JF, (2010) Focus issue: systems analysis of protein phosphorylation. Science Signaling 3: eg6.
-
(2010)
Science Signaling
, vol.3
-
-
Gough, N.R.1
Foley, J.F.2
-
3
-
-
0001954475
-
Physiological and biochemical aspects of nervous integration
-
In: Carlson F, editor, NJ: Prentice-Hall
-
Moore B, Perez V (1967) Physiological and biochemical aspects of nervous integration. In: Carlson F, editor. Englewood Cliffs, NJ: Prentice-Hall. 343-359.
-
(1967)
Englewood Cliffs
, pp. 343-359
-
-
Moore, B.1
Perez, V.2
-
4
-
-
0029871708
-
Interaction of 14-3-3 with signaling proteins is mediated by the recognition of phosphoserine
-
Muslin A, Tanner J, Allen P, Shaw A, (1996) Interaction of 14-3-3 with signaling proteins is mediated by the recognition of phosphoserine. Cell 84: 889-897.
-
(1996)
Cell
, vol.84
, pp. 889-897
-
-
Muslin, A.1
Tanner, J.2
Allen, P.3
Shaw, A.4
-
5
-
-
33646926129
-
14-3-3 proteins: A historic overview
-
Aitken A, (2006) 14-3-3 proteins: A historic overview. Seminars in Cancer Biology 16: 162-172.
-
(2006)
Seminars in Cancer Biology
, vol.16
, pp. 162-172
-
-
Aitken, A.1
-
6
-
-
82655180393
-
The role of protein disorder in the 14-3-3 interaction network
-
Bustos DM, (2012) The role of protein disorder in the 14-3-3 interaction network. Molecular BioSystems 8: 178-184.
-
(2012)
Molecular BioSystems
, vol.8
, pp. 178-184
-
-
Bustos, D.M.1
-
7
-
-
84873901523
-
Evolution of signal multiplexing by 14-3-3-binding 2R-ohnologue protein families in the vertebrates
-
Tinti M, Johnson C, Toth R, Ferrier DEK, MacKintosh C, (2012) Evolution of signal multiplexing by 14-3-3-binding 2R-ohnologue protein families in the vertebrates. Open Biology 2: 120103.
-
(2012)
Open Biology
, vol.2
, pp. 120103
-
-
Tinti, M.1
Johnson, C.2
Toth, R.3
Ferrier, D.E.K.4
MacKintosh, C.5
-
8
-
-
4344598183
-
Proteomic, Functional, and Domain-Based Analysis of In Vivo 14-3-3 Binding Proteins Involved in Cytoskeletal Regulation and Cellular Organization
-
Jin J, Smith FD, Stark C, Wells CD, Fawcett JP, et al. (2004) Proteomic, Functional, and Domain-Based Analysis of In Vivo 14-3-3 Binding Proteins Involved in Cytoskeletal Regulation and Cellular Organization. Current Biology 14: 1436-1450.
-
(2004)
Current Biology
, vol.14
, pp. 1436-1450
-
-
Jin, J.1
Smith, F.D.2
Stark, C.3
Wells, C.D.4
Fawcett, J.P.5
-
9
-
-
80054041183
-
Visualization and biochemical analyses of the emerging mammalian 14-3-3- phosphoproteome
-
M110.005751
-
Johnson C, Tinti M, Wood N, Campbell D, Toth R, et al. (2011) Visualization and biochemical analyses of the emerging mammalian 14-3-3- phosphoproteome. Molecular & Cellular Proteomics 10: M110.005751.
-
(2011)
Molecular & Cellular Proteomics
, vol.10
-
-
Johnson, C.1
Tinti, M.2
Wood, N.3
Campbell, D.4
Toth, R.5
-
10
-
-
33646898172
-
Structural determinants of 14-3-3 binding specificities and regulation of subcellular localization of 14-3-3-ligand complexes: A comparison of the X-ray crystal structures of all human 14-3-3 isoforms
-
Gardino AK, Smerdon SJ, Yaffe MB, (2006) Structural determinants of 14-3-3 binding specificities and regulation of subcellular localization of 14-3-3-ligand complexes: A comparison of the X-ray crystal structures of all human 14-3-3 isoforms. Seminars in Cancer Biology 16: 173-182.
-
(2006)
Seminars in Cancer Biology
, vol.16
, pp. 173-182
-
-
Gardino, A.K.1
Smerdon, S.J.2
Yaffe, M.B.3
-
11
-
-
77950872530
-
Bioinformatic and experimental survey of 14-3-3-binding sites
-
Johnson C, Crowther S, Stafford MJ, Campbell D, Toth R, et al. (2010) Bioinformatic and experimental survey of 14-3-3-binding sites. Biochemical J 427: 69-78.
-
(2010)
Biochemical J
, vol.427
, pp. 69-78
-
-
Johnson, C.1
Crowther, S.2
Stafford, M.J.3
Campbell, D.4
Toth, R.5
-
12
-
-
84873935623
-
Intrinsic Disorder Is a Key Characteristic in Partners That Bind 14-3-3 Proteins
-
Bustos DM, Iglesias AA, (2006) Intrinsic Disorder Is a Key Characteristic in Partners That Bind 14-3-3 Proteins. PROTEINS: Structure, Function, and Bioinformatics 42: 35-42.
-
(2006)
PROTEINS: Structure, Function, and Bioinformatics
, vol.42
, pp. 35-42
-
-
Bustos, D.M.1
Iglesias, A.A.2
-
13
-
-
40949117264
-
Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners
-
Oldfield CJ, Meng J, Yang JY, Yang MQ, Uversky VN, et al. (2008) Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners. BMC Genomics 9: Suppl. 1 S1.
-
(2008)
BMC Genomics
, vol.9
, Issue.SUPPL. 1
-
-
Oldfield, C.J.1
Meng, J.2
Yang, J.Y.3
Yang, M.Q.4
Uversky, V.N.5
-
14
-
-
58149488988
-
The 14-3-3 proteins: integrators of diverse signaling cues that impact cell fate and cancer development
-
Morrison DK, (2009) The 14-3-3 proteins: integrators of diverse signaling cues that impact cell fate and cancer development. Trends in Cell Biology 19: 16-23.
-
(2009)
Trends in Cell Biology
, vol.19
, pp. 16-23
-
-
Morrison, D.K.1
-
15
-
-
78650406559
-
Combining peptide recognition specificity and context information for the prediction of the 14-3-3-mediated interactome in S. cereviceae and H. sapiens
-
Panni S, Montecchi-Palazzi L, Kiemer L, Cabibbo A, Paoluzi S, et al. (2011) Combining peptide recognition specificity and context information for the prediction of the 14-3-3-mediated interactome in S. cereviceae and H. sapiens. Proteomics 11: 128-143.
-
(2011)
Proteomics
, vol.11
, pp. 128-143
-
-
Panni, S.1
Montecchi-Palazzi, L.2
Kiemer, L.3
Cabibbo, A.4
Paoluzi, S.5
-
16
-
-
84873885749
-
14-3-3 Phosphoprotein interaction networks - does isoform diversity present functional interaction specification?
-
Paul A-L, Denison FC, Schultz ER, Zupanska AK, Ferl RJ, (2012) 14-3-3 Phosphoprotein interaction networks - does isoform diversity present functional interaction specification? Frontiers in Plant Science 3: 1-14.
-
(2012)
Frontiers in Plant Science
, vol.3
, pp. 1-14
-
-
Paul, A.-L.1
Denison, F.C.2
Schultz, E.R.3
Zupanska, A.K.4
Ferl, R.J.5
-
17
-
-
47849083299
-
A Combined Proteome and Ultrastructural Localization Analysis of 14-3-3 Proteins in Transformed Human Amnion (AMA) Cells
-
Moreira MA, Shen T, Ohlsson G, Gromov P, Gromova I, et al. (2008) A Combined Proteome and Ultrastructural Localization Analysis of 14-3-3 Proteins in Transformed Human Amnion (AMA) Cells. Molecular & Cellular Proteomics 7: 1225-1240.
-
(2008)
Molecular & Cellular Proteomics
, vol.7
, pp. 1225-1240
-
-
Moreira, M.A.1
Shen, T.2
Ohlsson, G.3
Gromov, P.4
Gromova, I.5
-
18
-
-
70349317276
-
14-3-3 and its binding partners are regulators of protein-protein interactions during spermatogenesis
-
Sun I, Wong E, Li M, Lee W, Cheng CY, (2009) 14-3-3 and its binding partners are regulators of protein-protein interactions during spermatogenesis. J Endocrinol 202: 327-336.
-
(2009)
J Endocrinol
, vol.202
, pp. 327-336
-
-
Sun, I.1
Wong, E.2
Li, M.3
Lee, W.4
Cheng, C.Y.5
-
19
-
-
33745103749
-
Does isoform diversity explain functional differences in the 14-3-3 protein family?
-
Kjarland E, Keen TJ, Kleppe R, (2006) Does isoform diversity explain functional differences in the 14-3-3 protein family? Current Pharmaceutical Biotechnology 7: 217-223.
-
(2006)
Current Pharmaceutical Biotechnology
, vol.7
, pp. 217-223
-
-
Kjarland, E.1
Keen, T.J.2
Kleppe, R.3
-
20
-
-
33751248527
-
Structural basis for protein-protein interactions in the 14-3-3 protein family
-
Yang X, Lee WH, Sobott F, Papagrigoriou E, Robinson CV, et al. (2006) Structural basis for protein-protein interactions in the 14-3-3 protein family. Proc Natl Acad Sci USA 103: 17237-17242.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 17237-17242
-
-
Yang, X.1
Lee, W.H.2
Sobott, F.3
Papagrigoriou, E.4
Robinson, C.V.5
-
21
-
-
79951673886
-
Structurally Constrained Residues Outside the Binding Motif Are Essential in the Interaction of 14-3-3 and Phosphorylated Partner
-
Uhart M, Iglesias AA, Bustos DM, (2011) Structurally Constrained Residues Outside the Binding Motif Are Essential in the Interaction of 14-3-3 and Phosphorylated Partner. J Mol Biol 406: 552-557.
-
(2011)
J Mol Biol
, vol.406
, pp. 552-557
-
-
Uhart, M.1
Iglesias, A.A.2
Bustos, D.M.3
-
22
-
-
3843091516
-
Anchor residues in protein-protein interactions
-
Rajamani D, Thiel S, Vajda S, Camacho CJ, (2004) Anchor residues in protein-protein interactions. Proc Natl Acad Sci USA 101: 11287-11292.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 11287-11292
-
-
Rajamani, D.1
Thiel, S.2
Vajda, S.3
Camacho, C.J.4
-
24
-
-
84864184970
-
Deciphering a global network of functionally associated post-translational modifications
-
Minguez P, Parca L, Diella F, Mende DR, Kumar R, et al. (2012) Deciphering a global network of functionally associated post-translational modifications. Molecular Systems Biology 8: 1-14.
-
(2012)
Molecular Systems Biology
, vol.8
, pp. 1-14
-
-
Minguez, P.1
Parca, L.2
Diella, F.3
Mende, D.R.4
Kumar, R.5
-
25
-
-
84863420067
-
Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium
-
van Noort V, Seebacher J, Bader S, Mohammed S, Vonkova I, et al. (2012) Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium. Molecular Systems Biology 8.
-
(2012)
Molecular Systems Biology 8
-
-
van Noort, V.1
Seebacher, J.2
Bader, S.3
Mohammed, S.4
Vonkova, I.5
-
26
-
-
77449116892
-
Acetylation goes global: the emergence of acetylation biology
-
Norris KL, Lee JY, Yao TP, (2009) Acetylation goes global: the emergence of acetylation biology. Science Signaling 2: pe76.
-
(2009)
Science Signaling
, vol.2
-
-
Norris, K.L.1
Lee, J.Y.2
Yao, T.P.3
-
27
-
-
82555170600
-
Bioinformatic Analysis and Post-Translational Modification Crosstalk Prediction of Lysine Acetylation
-
Lu Z, Cheng Z, Zhao Y, Volchenboum SL, (2011) Bioinformatic Analysis and Post-Translational Modification Crosstalk Prediction of Lysine Acetylation. Plos One 6: e28228.
-
(2011)
Plos One
, vol.6
-
-
Lu, Z.1
Cheng, Z.2
Zhao, Y.3
Volchenboum, S.L.4
-
28
-
-
77149139846
-
Cell biology. When the beginning marks the end
-
Mogk A, Bukau B, (2010) Cell biology. When the beginning marks the end. Science 327: 966-967.
-
(2010)
Science
, vol.327
, pp. 966-967
-
-
Mogk, A.1
Bukau, B.2
-
29
-
-
68949212379
-
Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions
-
Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, et al. (2009) Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions. Science 325: 834-840.
-
(2009)
Science
, vol.325
, pp. 834-840
-
-
Choudhary, C.1
Kumar, C.2
Gnad, F.3
Nielsen, M.L.4
Rehman, M.5
-
30
-
-
58149271021
-
Integrated network analysis platform for protein-protein interactions
-
Wu J, Vallenius T, Ovaska K, Westermarck J, Makela TP, et al. (2009) Integrated network analysis platform for protein-protein interactions. Nature Methods 6: 2008-2010.
-
(2009)
Nature Methods
, vol.6
, pp. 2008-2010
-
-
Wu, J.1
Vallenius, T.2
Ovaska, K.3
Westermarck, J.4
Makela, T.P.5
-
31
-
-
33947419351
-
An evaluation of human protein-protein interaction data in the public domain
-
Mathivanan S, Periaswamy B, Gandhi TK, Kandasamy K, Suresh S, et al. (2006) An evaluation of human protein-protein interaction data in the public domain. BMC Bioinformatics 7: S19.
-
(2006)
BMC Bioinformatics
, vol.7
-
-
Mathivanan, S.1
Periaswamy, B.2
Gandhi, T.K.3
Kandasamy, K.4
Suresh, S.5
-
32
-
-
79959956361
-
Cspritz: accurate prediction of protein disorder segments with additional homology, secondary structure and linear motif information
-
Walsh I, Martin Martin AJ, Vullo A, Pollastri G, Tosatto S, (2011) Cspritz: accurate prediction of protein disorder segments with additional homology, secondary structure and linear motif information. Nucleic Acids Research 39: W190-196.
-
(2011)
Nucleic Acids Research
, vol.39
-
-
Walsh, I.1
Martin Martin, A.J.2
Vullo, A.3
Pollastri, G.4
Tosatto, S.5
-
33
-
-
80052592002
-
A directed protein interaction network for investigating intracellular signal transduction
-
Vinayagam A, Stelzl U, Foulle R, Plassmann S, Zenkner M, et al. (2011) A directed protein interaction network for investigating intracellular signal transduction. Science Signaling 4: rs8.
-
(2011)
Science Signaling
, vol.4
-
-
Vinayagam, A.1
Stelzl, U.2
Foulle, R.3
Plassmann, S.4
Zenkner, M.5
-
35
-
-
75549086174
-
Eukaryotic protein domains as functional units of cellular evolution
-
Jin J, Xie X, Chen C, Park JG, Stark C, et al. (2009) Eukaryotic protein domains as functional units of cellular evolution. Science Signaling 2: ra76.
-
(2009)
Science Signaling
, vol.2
-
-
Jin, J.1
Xie, X.2
Chen, C.3
Park, J.G.4
Stark, C.5
-
36
-
-
24044440971
-
BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
-
Maere S, Heymans K, Kuiper M, (2005) BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics (Oxford, England) 21: 3448-3449.
-
(2005)
Bioinformatics (Oxford, England)
, vol.21
, pp. 3448-3449
-
-
Maere, S.1
Heymans, K.2
Kuiper, M.3
-
37
-
-
0242490780
-
Cytoscape: a software environment for integrated models of biomolecular interaction networks
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, et al. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Research 13: 2498-2504.
-
(2003)
Genome Research
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
-
38
-
-
75849153303
-
The Universal Protein Resource (UniProt) in 2010
-
U C
-
U C, (2010) The Universal Protein Resource (UniProt) in 2010. Nucleic Acids Research 38: D142-148.
-
(2010)
Nucleic Acids Research
, vol.38
-
-
-
39
-
-
7244250182
-
Data mining in bioinformatics using Weka
-
Frank E, Hall M, Trigg L, Holmes G, Witten IH, (2004) Data mining in bioinformatics using Weka. Bioinformatics (Oxford, England) 20: 2479-2481.
-
(2004)
Bioinformatics (Oxford, England)
, vol.20
, pp. 2479-2481
-
-
Frank, E.1
Hall, M.2
Trigg, L.3
Holmes, G.4
Witten, I.H.5
-
40
-
-
1542287343
-
Superfamilies of evolved and designed networks
-
Milo R, Itzkovitz S, Kashtan N, Levitt R, Shen-Orr S, et al. (2004) Superfamilies of evolved and designed networks. Science 303: 1538-1542.
-
(2004)
Science
, vol.303
, pp. 1538-1542
-
-
Milo, R.1
Itzkovitz, S.2
Kashtan, N.3
Levitt, R.4
Shen-Orr, S.5
-
41
-
-
1942469444
-
Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction
-
Yeger-Lotem E, Sattath S, Kashtan N, Itzkovitz S, Milo R, et al. (2004) Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction. Proc Natl Acad Sci USA 101: 5934-5939.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 5934-5939
-
-
Yeger-Lotem, E.1
Sattath, S.2
Kashtan, N.3
Itzkovitz, S.4
Milo, R.5
-
42
-
-
41149119083
-
The role of disorder in interaction networks: a structural analysis
-
Kim PM, Sboner A, Xia Y, Gerstein M, (2008) The role of disorder in interaction networks: a structural analysis. Molecular Systems Biology 4: 179.
-
(2008)
Molecular Systems Biology
, vol.4
, pp. 179
-
-
Kim, P.M.1
Sboner, A.2
Xia, Y.3
Gerstein, M.4
-
43
-
-
57149116929
-
Tight Regulation of Unstructured Proteins: From Transcript Synthesis to Protein Degradation
-
Gsponer J, Futschik ME, Teichmann SA, Babu MM, (2008) Tight Regulation of Unstructured Proteins: From Transcript Synthesis to Protein Degradation. Science 322: 1365-1368.
-
(2008)
Science
, vol.322
, pp. 1365-1368
-
-
Gsponer, J.1
Futschik, M.E.2
Teichmann, S.A.3
Babu, M.M.4
-
44
-
-
0037032835
-
The protein kinase complement of the human genome
-
Manning G, Whyte DB, Martinez R, Hunter T, Sudarsanam S, (2002) The protein kinase complement of the human genome. Science 298: 1912-1934.
-
(2002)
Science
, vol.298
, pp. 1912-1934
-
-
Manning, G.1
Whyte, D.B.2
Martinez, R.3
Hunter, T.4
Sudarsanam, S.5
-
45
-
-
79959543603
-
Non-adaptive origins of interactome complexity
-
Fernández A, Lynch M, (2011) Non-adaptive origins of interactome complexity. Nature 474: 502-505.
-
(2011)
Nature
, vol.474
, pp. 502-505
-
-
Fernández, A.1
Lynch, M.2
-
46
-
-
84857059592
-
Subfunctionalization reduces the fitness cost of gene duplication in humans by buffering dosage imbalances
-
Fernández A, Tzeng Y-H, Hsu S-B, (2011) Subfunctionalization reduces the fitness cost of gene duplication in humans by buffering dosage imbalances. BMC Genomics 12: 604.
-
(2011)
BMC Genomics
, vol.12
, pp. 604
-
-
Fernández, A.1
Tzeng, Y.-H.2
Hsu, S.-B.3
-
47
-
-
0031616362
-
Protein Disorder and the Evolution of Molecular Recognition: Theory, Predictions and Observations
-
Dunker AK, Garner E, Guilliot S, Romero P, Albrecht K, et al. (1998) Protein Disorder and the Evolution of Molecular Recognition: Theory, Predictions and Observations. Pac Symp Biocomput: 473-485.
-
(1998)
Pac Symp Biocomput
, pp. 473-485
-
-
Dunker, A.K.1
Garner, E.2
Guilliot, S.3
Romero, P.4
Albrecht, K.5
-
48
-
-
2342473198
-
The importance of intrinsic disorder for protein phosphorylation
-
Iakoucheva LM, Radivojac P, Brown CJ, O'Connor TR, Sikes JG, et al. (2004) The importance of intrinsic disorder for protein phosphorylation. Nucleic Acids Research 32: 1037-1049.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 1037-1049
-
-
Iakoucheva, L.M.1
Radivojac, P.2
Brown, C.J.3
O'Connor, T.R.4
Sikes, J.G.5
-
49
-
-
79960797509
-
Proteome-Wide Mapping of the Drosophila Acetylome Demonstrates a High Degree of Conservation of Lysine Acetylation
-
Weinert BT, Wagner Sa, Horn H, Henriksen P, Liu WR, et al. (2011) Proteome-Wide Mapping of the Drosophila Acetylome Demonstrates a High Degree of Conservation of Lysine Acetylation. Science Signaling 4: ra48.
-
(2011)
Science Signaling
, vol.4
-
-
Weinert, B.T.1
Wagner S.Horn, H.2
Henriksen, P.3
Liu, W.R.4
-
51
-
-
33750456519
-
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
-
Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, et al. (2006) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 127: 635-648.
-
(2006)
Cell
, vol.127
, pp. 635-648
-
-
Olsen, J.V.1
Blagoev, B.2
Gnad, F.3
Macek, B.4
Kumar, C.5
-
52
-
-
0000109995
-
Transforming gene product of Rous sarcoma virus phosphorylates tyrosine
-
Hunter T, Sefton BM, (1980) Transforming gene product of Rous sarcoma virus phosphorylates tyrosine. Proc Natl Acad Sci USA 77: 1311-1315.
-
(1980)
Proc Natl Acad Sci USA
, vol.77
, pp. 1311-1315
-
-
Hunter, T.1
Sefton, B.M.2
-
53
-
-
79251540554
-
The tale of protein lysine acetylation in the cytoplasm
-
Sadoul K, Wang J, Diagouraga B, Khochbin S, (2011) The tale of protein lysine acetylation in the cytoplasm. Journal of Biomedicine & Biotechnology 2011: 970382.
-
(2011)
Journal of Biomedicine & Biotechnology
, vol.2011
, pp. 970382
-
-
Sadoul, K.1
Wang, J.2
Diagouraga, B.3
Khochbin, S.4
|