A Novel Trans Conformation of Ligand-Free Calmodulin

PLoS ONE

Volumn 8, Issue 1, 2013, Pages

  Kumar, Veerendra ^a   Chichili, Vishnu Priyanka Reddy ^a   Tang, Xuhua ^a   Sivaraman, J ^a  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

CALMODULIN;

AMINO ACID SUBSTITUTION; AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; COMPLEX FORMATION; CONTROLLED STUDY; CRYSTAL STRUCTURE; GENE SEQUENCE; LIGAND BINDING; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN DETERMINATION; PROTEIN PROTEIN INTERACTION; STRUCTURE ANALYSIS;

BINDING SITES; CALCIUM; CALMODULIN; MODELS, MOLECULAR; MOLECULAR DOCKING SIMULATION; PROTEIN BINDING; PROTEIN CONFORMATION; RECOMBINANT PROTEINS; ZINC;

EID: 84873865235     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0054834     Document Type: Article

References (45)

1. Fok AK, Aihara MS, Ishida M, Allen RD, (2008) Calmodulin localization and its effects on endocytic and phagocytic membrane trafficking in Paramecium multimicronucleatum. J Eukaryot Microbiol 55: 481-491.
2. Geiser JR, van Tuinen D, Brockerhoff SE, Neff MM, Davis TN, (1991) Can calmodulin function without binding calcium? Cell 65: 949-959.
3. Murtaugh TJ, Rowe PM, Vincent PL, Wright LS, Siegel FL, (1983) Posttranslational modification of calmodulin. Methods Enzymol 102: 158-170.
4. Yap KL, Ames JB, Swindells MB, Ikura M, (1999) Diversity of conformational states and changes within the EF-hand protein superfamily. Proteins 37: 499-507.
5. Wilson MA, Brunger AT, (2000) The 1.0 Å crystal structure of Ca(2+)-bound calmodulin: an analysis of disorder and implications for functionally relevant plasticity. J Mol Biol 301: 1237-1256.
6. Babu YS, Bugg CE, Cook WJ, (1988) Structure of calmodulin refined at 2.2 Å resolution. J Mol Biol 204: 191-204.
7. Babu YS, Sack JS, Greenhough TJ, Bugg CE, Means AR, et al. (1985) Three-dimensional structure of calmodulin. Nature 315: 37-40.
8. Dash S, Niemaczura W, Harrington HM, (1997) Characterization of the basic amphiphilic alpha-helix calmodulin-binding domain of a 61.5 kDa tobacco calmodulin-binding protein. Biochemistry 36: 2025-2029.
9. Chou JJ, Li S, Klee CB, Bax A, (2001) Solution structure of Ca(2+)-calmodulin reveals flexible hand-like properties of its domains. Nat Struct Biol 8: 990-997.
10. Meador WE, Means AR, Quiocho FA, (1993) Modulation of calmodulin plasticity in molecular recognition on the basis of x-ray structures. Science 262: 1718-1721.
11. Gifford JL, Ishida H, Vogel HJ, (2011) Fast methionine-based solution structure determination of calcium-calmodulin complexes. J Biomol NMR 50: 71-81.
12. Drum CL, Yan SZ, Bard J, Shen YQ, Lu D, et al. (2002) Structural basis for the activation of anthrax adenylyl cyclase exotoxin by calmodulin. Nature 415: 396-402.
13. Shen Y, Guo Q, Zhukovskaya NL, Drum CL, Bohm A, et al. (2004) Structure of anthrax edema factor-calmodulin-adenosine 5'-(alpha,beta-methylene)-triphosphate complex reveals an alternative mode of ATP binding to the catalytic site. Biochem Biophys Res Commun 317: 309-314.
14. Aoyagi M, Arvai AS, Tainer JA, Getzoff ED, (2003) Structural basis for endothelial nitric oxide synthase binding to calmodulin. Embo Journal 22: 766-775.
15. Elshorst B, Hennig M, Forsterling H, Diener A, Maurer M, et al. (1999) NMR solution structure of a complex of calmodulin with a binding peptide of the Ca2+ pump. Biochemistry 38: 12320-12332.
16. Pagnozzi D, Birolo L, Leo G, Contessi S, Lippe G, et al. (2010) Stoichiometry and topology of the complex of the endogenous ATP synthase inhibitor protein IF(1) with calmodulin. Biochemistry 49: 7542-7552.
17. van der Spoel D, de Groot BL, Hayward S, Berendsen HJ, Vogel HJ, (1996) Bending of the calmodulin central helix: a theoretical study. Protein Sci 5: 2044-2053.
18. Habermann E, Crowell K, Janicki P, (1983) Lead and other metals can substitute for Ca2+ in calmodulin. Archives of toxicology 54: 61-70.
19. Chao SH, Suzuki Y, Zysk JR, Cheung WY, (1984) Activation of calmodulin by various metal cations as a function of ionic radius. Molecular pharmacology 26: 75-82.
20. Ouyang H, Vogel HJ, (1998) Metal ion binding to calmodulin: NMR and fluorescence studies. Biometals: an international journal on the role of metal ions in biology, biochemistry, and medicine 11: 213-222.
21. Malmendal A, Linse S, Evenas J, Forsen S, Drakenberg T, (1999) Battle for the EF-hands: magnesium-calcium interference in calmodulin. Biochemistry 38: 11844-11850.
22. Baudier J, Haglid K, Haiech J, Gerard D, (1983) Zinc ion binding to human brain calcium binding proteins, calmodulin and S100b protein. Biochemical and biophysical research communications 114: 1138-1146.
23. Hendrickson WA, Horton JR, LeMaster DM, (1990) Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure. EMBO J 9: 1665-1672.
24. Otwinowski Z, Minor W, (1997) Processing of X-ray diffraction data collected in oscillation mode. Macromolecular Crystallography, Pt A 276: 307-326.
25. Sheldrick GM, (2008) A short history of SHELX. Acta Crystallogr A 64: 112-122.
26. Cowtan K, (2006) The Buccaneer software for automated model building. 1. Tracing protein chains. Acta Crystallogr D Biol Crystallogr 62: 1002-1011.
27. Emsley P, Cowtan K, (2004) Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60: 2126-2132.
28. Vagin AA, Steiner RA, Lebedev AA, Potterton L, McNicholas S, et al. (2004) REFMAC5 dictionary: organization of prior chemical knowledge and guidelines for its use. Acta Crystallogr D Biol Crystallogr 60: 2184-2195.
29. Laskowski RA, Macarthur MW, Moss DS, Thornton JM, (1993) Procheck- a Program to Check the Stereochemical Quality of Protein Structures. Journal of Applied Crystallography 26: 283-291.
30. DeLano WL, Lam JW, (2005) PyMOL: A communications tool for computational models. Abstracts of Papers of the American Chemical Society 230: U1371-U1372.
31. Krissinel E, Henrick K, (2007) Inference of macromolecular assemblies from crystalline state. J Mol Biol 372: 774-797.
32. Holm L, Sander C, (1995) Dali: a network tool for protein structure comparison. Trends Biochem Sci 20: 478-480.
33. Medvedeva MV, Polyakova OV, Watterson DM, Gusev NB, (1999) Mutation of Lys-75 affects calmodulin conformation. FEBS letters 450: 139-143.
34. Fallon JL, Quiocho FA, (2003) A closed compact structure of native Ca(2+)-calmodulin. Structure 11: 1303-1307.
35. Van Petegem F, Chatelain FC, Minor DL Jr, (2005) Insights into voltage-gated calcium channel regulation from the structure of the CaV1.2 IQ domain-Ca2+/calmodulin complex. Nature structural & molecular biology 12: 1108-1115.
36. Black DJ, Halling DB, Mandich DV, Pedersen SE, Altschuld RA, et al. (2005) Calmodulin interactions with IQ peptides from voltage-dependent calcium channels. American journal of physiology Cell physiology 288: C669-676.
37. Houdusse A, Gaucher JF, Krementsova E, Mui S, Trybus KM, et al. (2006) Crystal structure of apo-calmodulin bound to the first two IQ motifs of myosin V reveals essential recognition features. Proceedings of the National Academy of Sciences of the United States of America 103: 19326-19331.
38. Gerendasy DD, Herron SR, Jennings PA, Sutcliffe JG, (1995) Calmodulin stabilizes an amphiphilic alpha-helix within RC3/neurogranin and GAP-43/neuromodulin only when Ca2+ is absent. The Journal of biological chemistry 270: 6741-6750.
39. Warren JT, Guo Q, Tang WJ, (2007) A 1.3-Å structure of zinc-bound N-terminal domain of calmodulin elucidates potential early ion-binding step. J Mol Biol 374: 517-527.
40. Fujiwara T, Aoki S, Komatsuzawa H, Nishida T, Ohara M, et al. (2005) Mutation analysis of the histidine residues in the glycylglycine endopeptidase ALE-1. Journal of bacteriology 187: 480-487.
41. Kuboniwa H, Tjandra N, Grzesiek S, Ren H, Klee CB, et al. (1995) Solution structure of calcium-free calmodulin. Nature structural biology 2: 768-776.
42. Linse S, Helmersson A, Forsen S, (1991) Calcium binding to calmodulin and its globular domains. The Journal of biological chemistry 266: 8050-8054.
43. Kursula P, Majava V, (2007) A structural insight into lead neurotoxicity and calmodulin activation by heavy metals. Acta crystallographica Section F, Structural biology and crystallization communications 63: 653-656.
44. Wilson MA, Brunger AT, (2003) Domain flexibility in the 1.75 Å resolution structure of Pb2+-calmodulin. Acta crystallographica Section D, Biological crystallography 59: 1782-1792.
45. Alexander KA, Cimler BM, Meier KE, Storm DR, (1987) Regulation of calmodulin binding to P-57. A neurospecific calmodulin binding protein. J Biol Chem 262: 6108-6113.