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Volumn 58, Issue 6, 2013, Pages 437-446

Geobacillus subterraneus subsp. aromaticivorans subsp. nov., a novel thermophilic and alkaliphilic bacterium isolated from a hot spring in sırnak, Turkey

Author keywords

DNA DNA hybridization analysis; Geobacillus subterraneus subsp. aromaticivorans subsp. nov.; Lipids; Taxonomy; Thermophile

Indexed keywords

AMPICILLIN; ANTIBIOTIC AGENT; BACITRACIN; CATALASE; CHLORAMPHENICOL; FATTY ACID; FUSIDIC ACID; GENOMIC DNA; GENTAMICIN; KANAMYCIN; LINCOMYCIN; MENAQUINONE; NEOMYCIN; NOVOBIOCIN; PENICILLIN DERIVATIVE; RNA 16S; STARCH; STREPTOMYCIN; TETRACYCLINE; TILCOMYCIN; UNCLASSIFIED DRUG; UREASE;

EID: 84873831384     PISSN: 00221260     EISSN: 13498037     Source Type: Journal    
DOI: 10.2323/jgam.58.437     Document Type: Article
Times cited : (14)

References (34)
  • 1
    • 0034023135 scopus 로고    scopus 로고
    • Saccharococcus caldoxylosilyticus sp. nov., an obligately thermophilic, xylose-utilizing, endospore-forming bacterium
    • Ahmad, S., Scopes, R. K., Rees, G. N., and Patel, B. K. C. (2000) Saccharococcus caldoxylosilyticus sp. nov., an obligately thermophilic, xylose-utilizing, endospore-forming bacterium. Int. J. Syst. Evol. Microbiol., 50, 517-523.
    • (2000) Int. J. Syst. Evol. Microbiol , vol.50 , pp. 517-523
    • Ahmad, S.1    Scopes, R.K.2    Rees, G.N.3    Patel, B.K.C.4
  • 2
    • 9944257028 scopus 로고    scopus 로고
    • Geobacillus debilis sp. nov., a novel obligately thermophilic bacterium isolated from a cool soil environment, and reassignment of Bacillus pallidus to Geobacillus pallidus comb. nov
    • Banat, I. M., Marchant, R., and Rahman, T. J. (2004) Geobacillus debilis sp. nov., a novel obligately thermophilic bacterium isolated from a cool soil environment, and reassignment of Bacillus pallidus to Geobacillus pallidus comb. nov. Int. J. Syst. Evol. Microbiol., 54, 2197-2201.
    • (2004) Int. J. Syst. Evol. Microbiol , vol.54 , pp. 2197-2201
    • Banat, I.M.1    Marchant, R.2    Rahman, T.J.3
  • 3
    • 0000822169 scopus 로고
    • The intensification of the Voges-Proskauer reaction by the addition of alpha- napthol
    • Barrit, M. M. (1936) The intensification of the Voges-Proskauer reaction by the addition of alpha- napthol. J. Pathol. Bacteriol.,42, 441-454.
    • (1936) J. Pathol. Bacteriol , vol.42 , pp. 441-454
    • Barrit, M.M.1
  • 4
    • 35648991375 scopus 로고    scopus 로고
    • EzTaxon: A web-based tool for the identifi cation of prokaryotes based on 16S ribosomal RNA gene sequences
    • Chun, J., Lee, J. H., Jung, Y., Kim, M., Kim, S., Kim, B. K., and Lim, Y. W. (2007) EzTaxon: A web-based tool for the identifi cation of prokaryotes based on 16S ribosomal RNA gene sequences. Int. J. Syst. Evol. Microbiol., 57, 2259-2261.
    • (2007) Int. J. Syst. Evol. Microbiol , vol.57 , pp. 2259-2261
    • Chun, J.1    Lee, J.H.2    Jung, Y.3    Kim, M.4    Kim, S.5    Kim, B.K.6    Lim, Y.W.7
  • 5
    • 0002985494 scopus 로고
    • The differentiation of bacteria of the colon-aerogenes family by the use of indicators
    • Clark, W. M. and Lubs, H. A. (1915) The differentiation of bacteria of the colon-aerogenes family by the use of indicators. J. Infect. Dis., 17, 160-173.
    • (1915) J. Infect. Dis , vol.17 , pp. 160-173
    • Clark, W.M.1    Lubs, H.A.2
  • 6
    • 85080520822 scopus 로고    scopus 로고
    • Taxonomic revision of the genus Geobacillus: Emendation of Geobacillus, G. stearothermophilus, G. jurassicus, G. toebii, G. thermodenitrificans and G. thermoglucosidans
    • (nom. corrig., formerly 'thermoglucosidasius'); transfer of Bacillus thermantarcticus to the genus as G. thermantarcticus; proposal of Caldibacillus debilis gen. nov., comb. nov.; transfer of G. tepidamans to Anoxybacillus as A. tepidamans and proposal of Anoxybacillus caldiproteolyticus sp. nov[Epub ahead of print]
    • Coorevits, A., Dinsdale, A. E., Halket, G., Lebbe, L., de Vos, P., Van Landschoot, A., and Logan, N. A. (2011) Taxonomic revision of the genus Geobacillus: emendation of Geobacillus, G. stearothermophilus, G. jurassicus, G. toebii, G. thermodenitrificans and G. thermoglucosidans (nom. corrig., formerly 'thermoglucosidasius'); transfer of Bacillus thermantarcticus to the genus as G. thermantarcticus; proposal of Caldibacillus debilis gen. nov., comb. nov.; transfer of G. tepidamans to Anoxybacillus as A. tepidamans and proposal of Anoxybacillus caldiproteolyticus sp. nov. Int. J. Syst. Evol. Microbiol., 19. [Epub ahead of print].
    • (2011) Int. J. Syst. Evol. Microbiol , pp. 19
    • van Landschoot, A.1    Logan, N.A.2
  • 8
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39, 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 9
    • 0035194244 scopus 로고    scopus 로고
    • Reclassification of Saccharococcus caldoxylosilyticus as Geobacillus caldoxylosilyticus (Ahmad et al., 2000) comb. nov
    • Fortina, M. G., Mora, D., Schumann, P., Parini, C., Manachini, P. L., and Stackebrandt, E. (2001) Reclassification of Saccharococcus caldoxylosilyticus as Geobacillus caldoxylosilyticus (Ahmad et al., 2000) comb. nov. Int. J. Syst. Evol. Microbiol., 51, 2063-2071.
    • (2001) Int. J. Syst. Evol. Microbiol , vol.51 , pp. 2063-2071
    • Fortina, M.G.1    Mora, D.2    Schumann, P.3    Parini, C.4    Manachini, P.L.5    Stackebrandt, E.6
  • 10
    • 84856770613 scopus 로고    scopus 로고
    • Judicial Commission of the International Committee on Systematics of Prokaryotes. XIIth International (IUMS) Congress of Bacteriology and Applied Microbiology
    • Minutes of the meetings, 3, 4 and 6 August 2008, Istanbul, Turkey
    • Garrity, G. M., Labeda, D. P., and Oren, A. (2011) Judicial Commission of the International Committee on Systematics of Prokaryotes. XIIth International (IUMS) Congress of Bacteriology and Applied Microbiology. Minutes of the meetings, 3, 4 and 6 August 2008, Istanbul, Turkey. Int. J. Syst. Evol. Microbiol., 61, 2775-2780.
    • (2011) Int. J. Syst. Evol. Microbiol , vol.61 , pp. 2775-2780
    • Garrity, G.M.1    Labeda, D.P.2    Oren, A.3
  • 12
    • 0036862191 scopus 로고    scopus 로고
    • A fluorimetric method for the estimation of G+C mol% content in microorganism by thermal denaturation temperature
    • Gonzalez, J. M. and Saiz-Jimenez, C. (2002) A fluorimetric method for the estimation of G+C mol% content in microorganism by thermal denaturation temperature. Environ. Microbiol., 4, 770-773.
    • (2002) Environ. Microbiol , vol.4 , pp. 770-773
    • Gonzalez, J.M.1    Saiz-Jimenez, C.2
  • 14
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol., 16, 111-120.
    • (1980) J. Mol. Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 16
    • 77956816836 scopus 로고
    • Classical and rapid identification methods for medically important bacteria
    • Lanyi, B. (1987) Classical and rapid identification methods for medically important bacteria. Methods Microbiol., 19, 1- 67.
    • (1987) Methods Microbiol , vol.19 , pp. 1
    • Lanyi, B.1
  • 18
    • 77954665328 scopus 로고    scopus 로고
    • Reclassification of Geobacillus pallidus (Scholz et al., 1988) Banat et al. 2004 as Aeribacillus pallidus gen. nov., comb. nov
    • Miñana-Galbis, D., Pinzón, D. L., Lorén, J. G., Manresa, A., and Oliart-Ros, R. M. (2010) Reclassification of Geobacillus pallidus (Scholz et al., 1988) Banat et al. 2004 as Aeribacillus pallidus gen. nov., comb. nov. Int. J. Syst. Evol. Microbiol., 60, 1600-1604.
    • (2010) Int. J. Syst. Evol. Microbiol , vol.60 , pp. 1600-1604
    • Miñana-Galbis, D.1    Pinzón, D.L.2    Lorén, J.G.3    Manresa, A.4    Oliart-Ros, R.M.5
  • 21
    • 0035064602 scopus 로고    scopus 로고
    • Taxonomic study of aerobic thermophilic bacilli: Descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans
    • Bacillus kaustophilus, Bacillus thermoglucosidasius and Bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilusG. thermocatenulatus, G. thermoleovorans, G. kaustophilus, G. thermoglucosidasius and G. thermodenitrificans
    • Nazina, T. N., Tourova, T. P., Poltaraus, A. B., Novikova, E. V., Grigoryan, A. A., Ivanova, A. E., Lysenko, A. M., Petrunyaka, V. V., Osipov, G. A., Belyaev, S. S., and Ivanov, M. V. (2001) Taxonomic study of aerobic thermophilic bacilli: Descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermoglucosidasius and Bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilusG. thermocatenulatus, G. thermoleovorans, G. kaustophilus, G. thermoglucosidasius and G. thermodenitrificans. Int. J. Syst. Evol. Microbiol., 51, 433-446.
    • (2001) Int. J. Syst. Evol. Microbiol , vol.51 , pp. 433-446
    • Nazina, T.N.1    Tourova, T.P.2    Poltaraus, A.B.3    Novikova, E.V.4    Grigoryan, A.A.5    Ivanova, A.E.6    Lysenko, A.M.7    Petrunyaka, V.V.8    Osipov, G.A.9    Belyaev, S.S.10    Ivanov, M.V.11
  • 22
    • 0029786517 scopus 로고    scopus 로고
    • Bacillus thermoantarcticus sp. nov. from Mount Melbourne, Antarctica: A novel thermophilic species
    • Nicolaus, B., Lama, L., Esposito, E., Manca, M. C., di Prisco, G., and Gambacorta, A. (1996) Bacillus thermoantarcticus sp. nov. from Mount Melbourne, Antarctica: A novel thermophilic species. Polar Biol., 16, 101-104.
    • (1996) Polar Biol , vol.16 , pp. 101-104
    • Nicolaus, B.1    Lama, L.2    Esposito, E.3    Manca, M.C.4    di Prisco, G.5    Gambacorta, A.6
  • 23
    • 0035151041 scopus 로고    scopus 로고
    • Lipid modulation by environmental stresses in two models of extremophiles isolated from Antarctica
    • Nicolaus, B., Manca, M. C., Lama, L., Esposito, E., and Gambacorta, A. (2001) Lipid modulation by environmental stresses in two models of extremophiles isolated from Antarctica. Polar Biol., 24, 1-8.
    • (2001) Polar Biol , vol.24 , pp. 1-8
    • Nicolaus, B.1    Manca, M.C.2    Lama, L.3    Esposito, E.4    Gambacorta, A.5
  • 24
    • 84872429025 scopus 로고    scopus 로고
    • Halomonas smyrnensis sp. nov., a moderately halophilic, exopolysaccharide-producing bacterium from Çamalti{dotless} Saltern Area, Turkey
    • Feb 10. [Epub ahead of print]
    • Poli, A., Nicolaus, B., Denizci, A. A., Yavuzturk, B., and Kazan, D. (2012) Halomonas smyrnensis sp. nov., a moderately halophilic, exopolysaccharide-producing bacterium from Çamalti{dotless} Saltern Area, Turkey. Int. J. Syst. Evol. Microbiol., Feb 10. [Epub ahead of print].
    • (2012) Int. J. Syst. Evol. Microbiol
    • Poli, A.1    Nicolaus, B.2    Denizci, A.A.3    Yavuzturk, B.4    Kazan, D.5
  • 26
    • 70350699166 scopus 로고    scopus 로고
    • Anoxybacillus thermarum sp. nov., a novel thermophilic bacterium isolated from thermal mud in Euganean hot springs
    • Abano Terme, Italy
    • Poli, A., Romano, I., Cordella, P., Orlando, P., Nicolaus, B., and Ceschi Berrini, C. (2009) Anoxybacillus thermarum sp. nov., a novel thermophilic bacterium isolated from thermal mud in Euganean hot springs, Abano Terme, Italy. Extremophiles, 13, 867-874.
    • (2009) Extremophiles , vol.13 , pp. 867-874
    • Poli, A.1    Romano, I.2    Cordella, P.3    Orlando, P.4    Nicolaus, B.5    Berrini, C.C.6
  • 27
    • 0029799968 scopus 로고    scopus 로고
    • The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage; proposal of Nocardiopsaceae fam. nov
    • Rainey, F. A., Ward-Rainey, N., Kroppenstedt, R. M., and Stackebrandt, E. (1996) The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage; proposal of Nocardiopsaceae fam. nov. Int. J. Syst. Bacteriol., 46, 1088-1092.
    • (1996) Int. J. Syst. Bacteriol , vol.46 , pp. 1088-1092
    • Rainey, F.A.1    Ward-Rainey, N.2    Kroppenstedt, R.M.3    Stackebrandt, E.4
  • 28
    • 0031048240 scopus 로고    scopus 로고
    • The utilization of RAPD-PCR for identifying thermophilic and mesophilic Bacillus species. FEMS Microbiol
    • Ronimus, R. S., Parker, L. E., and Morgan, H. W. (1997) The utilization of RAPD-PCR for identifying thermophilic and mesophilic Bacillus species. FEMS Microbiol. Lett., 147, 75-79.
    • (1997) Lett , vol.147 , pp. 75-79
    • Ronimus, R.S.1    Parker, L.E.2    Morgan, H.W.3
  • 29
    • 9944226719 scopus 로고    scopus 로고
    • Classification of isolates from locations in Austria and Yellowstone National Park as Geobacillus tepidamans sp. nov
    • Schäffer, C., Franck, W. L., Scheberl, A., Kosma, P., McDermott, T. R., and Messner, P. (2004) Classification of isolates from locations in Austria and Yellowstone National Park as Geobacillus tepidamans sp. nov. Int. J. Syst. Evol. Microbiol., 54, 2361-2368.
    • (2004) Int. J. Syst. Evol. Microbiol , vol.54 , pp. 2361-2368
    • Schäffer, C.1    Franck, W.L.2    Scheberl, A.3    Kosma, P.4    McDermott, T.R.5    Messner, P.6
  • 31
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol., 28, 2731-2739.
    • (2011) Mol. Biol. Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 32
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. (1997) The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res., 25, 4876- 4882.
    • (1997) Nucl. Acids Res , vol.25 , pp. 4876
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 34
    • 0001125315 scopus 로고
    • Bacillus thermoleovorans, sp. nov., a species of obligately thermophilic hydrocarbon utilizing endospore forming bacteria
    • Zarilla, K. A. and Perry, J. J. (1987) Bacillus thermoleovorans, sp. nov., a species of obligately thermophilic hydrocarbon utilizing endospore forming bacteria. Syst. Appl. Microbiol., 9, 258-264.
    • (1987) Syst. Appl. Microbiol , vol.9 , pp. 258-264
    • Zarilla, K.A.1    Perry, J.J.2


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