메뉴 건너뛰기




Volumn 52, Issue 6, 2002, Pages 2251-2255

Geobacillus toebii sp. nov., a novel thermophilic bacterium isolated from hay compost

Author keywords

Geobacillus toebii sp. nov.; Hay compost; Polyphasic taxonomy; Thermophile

Indexed keywords

BACTERIAL DNA; CYTOSINE; DIAMINOPIMELIC ACID; DNA 16S; FATTY ACID; GENOMIC DNA; GUANINE; ISOCITRATE LYASE; ISOPRENOID;

EID: 0036865933     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02181-0     Document Type: Article
Times cited : (114)

References (36)
  • 2
    • 0025919484 scopus 로고
    • Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small-subunit-ribosomal RNA sequences
    • Ash, C., Farrow, J. A. E., Wallbanks, S. & Collins, M. D. (1991). Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small-subunit-ribosomal RNA sequences. Lett Appl Microbiol 13, 202-206.
    • (1991) Lett. Appl. Microbiol. , vol.13 , pp. 202-206
    • Ash, C.1    Farrow, J.A.E.2    Wallbanks, S.3    Collins, M.D.4
  • 3
    • 0027860384 scopus 로고
    • Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus
    • Ash, C., Priest, F. G. & Collins, M. D. (1993). Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus. Antonie van Leeuwenhoek 64, 253-260.
    • (1993) Antonie Van Leeuwenhoek , vol.64 , pp. 253-260
    • Ash, C.1    Priest, F.G.2    Collins, M.D.3
  • 4
    • 0000738385 scopus 로고
    • AL
    • Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins
    • AL. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1105-1139. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
    • (1986) Bergey's Manual of Systematic Bacteriology , vol.2 , pp. 1105-1139
    • Claus, D.1    Berkeley, R.C.W.2
  • 5
    • 0024358339 scopus 로고
    • Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in micro-dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
    • Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in micro-dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
    • (1989) Int. J. Syst. Bacteriol. , vol.39 , pp. 224-229
    • Ezaki, T.1    Hashimoto, Y.2    Yabuuchi, E.3
  • 6
    • 0012152240 scopus 로고
    • PHYLIP: Phylogenetic Inference Package, version 3.5. Department of Genetics, University of Washington, Seattle, USA
    • Felsenstein, J. (1993). PHYLIP: Phylogenetic Inference Package, version 3.5. Department of Genetics, University of Washington, Seattle, USA.
    • (1993)
    • Felsenstein, J.1
  • 7
    • 0026330928 scopus 로고
    • Isolation and identification of thermophilic bacteria from sewage sludge compost
    • Fugio, Y. & Kume, S. J. (1991). Isolation and identification of thermophilic bacteria from sewage sludge compost. J Ferment Bioeng 72, 334-337.
    • (1991) J. Ferment. Bioeng. , vol.72 , pp. 334-337
    • Fugio, Y.1    Kume, S.J.2
  • 9
    • 0012195988 scopus 로고
    • One hundred and seven years of the genus Bacillus
    • Edited by R. C. W. Berkeley & M. Goodfellow. London, New York: Academic Press
    • Gordon, R. E. (1981). One hundred and seven years of the genus Bacillus. In The Aerobic Endospore-forming Bacteria: Classification and Identification, pp. 1-15. Edited by R. C. W. Berkeley & M. Goodfellow. London, New York: Academic Press.
    • (1981) The Aerobic Endospore-forming Bacteria: Classification and Identification , pp. 1-15
    • Gordon, R.E.1
  • 11
    • 0029818079 scopus 로고    scopus 로고
    • A polyphasic reassessment of the genus Paenibacillus, reclassification of Bacillus lautus (Nakamura 1984) as Paenibacillus lautus comb. nov. and of Bacillus peoriae (Montefusco et al. 1993) as Paenibacillus peoriae comb. nov., and emended descriptions of P. lautus and of P. peoriae
    • Heyndrickx, M., Vandemeulebroecke, K., Scheldeman, P., Kersters, K., De Vos, P., Logan, N. A., Aziz, A. M., Ali, N. & Berkeley, R. C. W. (1996). A polyphasic reassessment of the genus Paenibacillus, reclassification of Bacillus lautus (Nakamura 1984) as Paenibacillus lautus comb. nov. and of Bacillus peoriae (Montefusco et al. 1993) as Paenibacillus peoriae comb. nov., and emended descriptions of P. lautus and of P. peoriae. Int J Syst Bacteriol 46, 988-1003.
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 988-1003
    • Heyndrickx, M.1    Vandemeulebroecke, K.2    Scheldeman, P.3    Kersters, K.4    De Vos, P.5    Logan, N.A.6    Aziz, A.M.7    Ali, N.8    Berkeley, R.C.W.9
  • 12
    • 0030750080 scopus 로고    scopus 로고
    • A polyphasic reassessment of the genus Aneurinibacillus, reclassification of Bacillus thermoaerophilus (Meier-Stauffer et al. 1996) as Aneurinibacillus thermoaerophilus comb. nov., and emended descriptions of A. aneurinilyticus corrig., A. migulanus, and A. thermoaerophilus
    • & 7 other authors
    • Heyndrickx, M., Lebbe, L., Vancanneyt, M. & 7 other authors (1997). A polyphasic reassessment of the genus Aneurinibacillus, reclassification of Bacillus thermoaerophilus (Meier-Stauffer et al. 1996) as Aneurinibacillus thermoaerophilus comb. nov., and emended descriptions of A. aneurinilyticus corrig., A. migulanus, and A. thermoaerophilus. Int J Syst Bacteriol 47, 808-817.
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 808-817
    • Heyndrickx, M.1    Lebbe, L.2    Vancanneyt, M.3
  • 13
    • 0031893769 scopus 로고    scopus 로고
    • Virgibacillus: A new genus to accommodate Bacillus pantothenticus (Proom and Knight 1950). Emended description of Virgibacillus pantothenticus
    • Heyndrickx, M., Lebbe, L., Kersters, K., De Vos, P., Forsyth, G. & Logan, N. A. (1998). Virgibacillus: a new genus to accommodate Bacillus pantothenticus (Proom and Knight 1950). Emended description of Virgibacillus pantothenticus. Int J Syst Bacteriol 48, 99-106.
    • (1998) Int. J. Syst. Bacteriol. , vol.48 , pp. 99-106
    • Heyndrickx, M.1    Lebbe, L.2    Kersters, K.3    De Vos, P.4    Forsyth, G.5    Logan, N.A.6
  • 14
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Edited by H. N. Munro. New York: Academic Press
    • Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-232. Edited by H. N. Munro. New York: Academic Press.
    • (1969) Mammalian Protein Metabolism , pp. 21-232
    • Jukes, T.H.1    Cantor, C.R.2
  • 15
    • 77956800518 scopus 로고
    • Lipids and cell-wall analysis in bacterial systematics
    • Komagata, K. & Suzuki, K. (1987). Lipids and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-203.
    • (1987) Methods Microbiol. , vol.19 , pp. 161-203
    • Komagata, K.1    Suzuki, K.2
  • 17
    • 0035064602 scopus 로고    scopus 로고
    • Taxonomic study of aerobic thermophilic bacilli
    • & 8 other authors
    • Nazina, T. N., Tourova, T. P., Poltaraus, A. B. & 8 other authors (2001). Taxonomic study of aerobic thermophilic bacilli: descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermoglucosidasius and Bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilus, G. thermocatenulatus, G. thermoleovorans, G. kaustophilus, G. thermoglucosidasius and G. thermodenitrificans. Int J Syst Evol Microbiol 51, 433-446.
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 433-446
    • Nazina, T.N.1    Tourova, T.P.2    Poltaraus, A.B.3
  • 18
    • 0031005599 scopus 로고    scopus 로고
    • High-resolution immuno-scanning electron microscopy using a non-coating method: Study of herpes simplex virus glycoproteins on the surface of virus particles and infected cells
    • Padilla, J. A., Uno, F., Yamada, M., Namba, H. & Nii, S. (1997). High-resolution immuno-scanning electron microscopy using a non-coating method: study of herpes simplex virus glycoproteins on the surface of virus particles and infected cells. J Electron Microsc 46, 171-180.
    • (1997) J. Electron Microsc. , vol.46 , pp. 171-180
    • Padilla, J.A.1    Uno, F.2    Yamada, M.3    Namba, H.4    Nii, S.5
  • 19
    • 0023785916 scopus 로고
    • A numerical classification of the genus Bacillus
    • Priest F. G., Goodfellow, M. & Todd, C. (1988). A numerical classification of the genus Bacillus. J Gen Microbiol 134, 1847-1882.
    • (1988) J. Gen. Microbiol. , vol.134 , pp. 1847-1882
    • Priest, F.G.1    Goodfellow, M.2    Todd, C.3
  • 20
    • 0027955374 scopus 로고
    • The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA analysis
    • Rainey, F. A., Fritze, D. & Stackebrandt, E. (1994). The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA analysis. FEMS Microbiol Lett 115, 205-211.
    • (1994) FEMS Microbiol. Lett. , vol.115 , pp. 205-211
    • Rainey, F.A.1    Fritze, D.2    Stackebrandt, E.3
  • 21
    • 0034201690 scopus 로고    scopus 로고
    • A novel microbial interaction: Obligate commensalism between a new gram-negative thermophile and a thermophilic Bacillus strain
    • Rhee, S.-K., Lee, S.-G., Hong, S.-P., Choi, Y.-H., Park, J.-H., Kim, C.-J. & Sung, M.-H. (2000). A novel microbial interaction: obligate commensalism between a new gram-negative thermophile and a thermophilic Bacillus strain. Extremophiles 4, 131-136.
    • (2000) Extremophiles , vol.4 , pp. 131-136
    • Rhee, S.-K.1    Lee, S.-G.2    Hong, S.-P.3    Choi, Y.-H.4    Park, J.-H.5    Kim, C.-J.6    Sung, M.-H.7
  • 22
    • 19044398153 scopus 로고    scopus 로고
    • Characterization of Symbiobacterium toebii, an obligate commensal thermophile isolated from compost
    • & 9 other authors
    • Rhee, S.-K., Jeon, C. O., Bae, J.-W. & 9 other authors (2002). Characterization of Symbiobacterium toebii, an obligate commensal thermophile isolated from compost. Extremophiles 6, 57-64.
    • (2002) Extremophiles , vol.6 , pp. 57-64
    • Rhee, S.-K.1    Jeon, C.O.2    Bae, J.-W.3
  • 23
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 24
    • 0029836888 scopus 로고    scopus 로고
    • Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov
    • Shida, O., Takagi, H., Kadowaki, K. & Komagata, K. (1996). Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. Int J Syst Bacteriol 46, 939-946.
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 939-946
    • Shida, O.1    Takagi, H.2    Kadowaki, K.3    Komagata, K.4
  • 25
    • 0022355082 scopus 로고
    • Effect of temperature on bacterial species diversity in thermophilic solid-waste composting
    • Strom, P. F. (1985a). Effect of temperature on bacterial species diversity in thermophilic solid-waste composting. Appl Environ Microbiol 50, 899-905.
    • (1985) Appl. Environ. Microbiol. , vol.50 , pp. 899-905
    • Strom, P.F.1
  • 26
    • 0022414395 scopus 로고
    • Identification of thermophilic bacteria in solid-waste composting
    • Strom, P. F. (1985b). Identification of thermophilic bacteria in solid-waste composting. Appl Environ Microbiol 50, 906-913.
    • (1985) Appl. Environ. Microbiol. , vol.50 , pp. 906-913
    • Strom, P.F.1
  • 28
    • 0021715576 scopus 로고
    • Determination of DNA base composition by reverse-phase high-performance liquid chromatography
    • Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
    • (1984) FEMS Microbiol. Lett. , vol.25 , pp. 125-128
    • Tamaoka, J.1    Komagata, K.2
  • 29
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thomson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thomson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 30
    • 0033113603 scopus 로고    scopus 로고
    • Gracilibacillus gen. nov., with description of Gracilibacillus halotolerans gen. nov., sp. nov.; transfer of Bacillus dipsosauri to Gracilibacillus dipsosauri comb. nov., and Bacillus salexigens to the genus Salibacillus gen. nov., as Salibacillus salexigens comb. nov
    • Wainø, M., Tindall, B. J., Schumann, P. & Ingvorsen, K. (1999). Gracilibacillus gen. nov., with description of Gracilibacillus halotolerans gen. nov., sp. nov.; transfer of Bacillus dipsosauri to Gracilibacillus dipsosauri comb. nov., and Bacillus salexigens to the genus Salibacillus gen. nov., as Salibacillus salexigens comb. nov. Int J Syst Bacteriol 49, 821-831.
    • (1999) Int. J. Syst. Bacteriol. , vol.49 , pp. 821-831
    • Wainø, M.1    Tindall, B.J.2    Schumann, P.3    Ingvorsen, K.4
  • 31
    • 0000770675 scopus 로고
    • Report of the ad hoc committee on reconciliation of approaches to bacterial systematics
    • & 9 other authors International Committee on Systematic Bacteriology
    • Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
    • (1987) Int. J. Syst. Bacteriol. , vol.37 , pp. 463-464
    • Wayne, L.G.1    Brenner, D.J.2    Colwell, R.R.3
  • 32
    • 0027852329 scopus 로고
    • A polyphasic taxonomic study of thermophilic bacilli from a wide geographical area
    • White, D., Sharp, R. J. & Priest, F. G. (1993). A polyphasic taxonomic study of thermophilic bacilli from a wide geographical area. Antonie van Leeuwenhoek 64, 357-386.
    • (1993) Antonie Van Leeuwenhoek , vol.64 , pp. 357-386
    • White, D.1    Sharp, R.J.2    Priest, F.G.3
  • 33
    • 0026608760 scopus 로고
    • Comparative sequence analyses on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and proposal for creation of a new genus, Alicyclobacillus gen. nov
    • Wisotzkey, J. D., Jurtshuk, P., Jr, Fox, G. E., Deinhard, G. & Poralla, K. (1992). Comparative sequence analyses on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and proposal for creation of a new genus, Alicyclobacillus gen. nov. Int J Syst Bacteriol 42, 263-269.
    • (1992) Int. J. Syst. Bacteriol. , vol.42 , pp. 263-269
    • Wisotzkey, J.D.1    Jurtshuk P., Jr.2    Fox, G.E.3    Deinhard, G.4    Poralla, K.5
  • 35
    • 0344542711 scopus 로고    scopus 로고
    • Inter- and intraspecific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rDNA sequences
    • Yoon, J.-H., Lee, S. T. & Park, Y.-H. (1998). Inter- and intraspecific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rDNA sequences. Int J Syst Bacteriol 48, 187-194.
    • (1998) Int. J. Syst. Bacteriol. , vol.48 , pp. 187-194
    • Yoon, J.-H.1    Lee, S.T.2    Park, Y.-H.3
  • 36
    • 0001125315 scopus 로고
    • Bacillus thermoleovorans, sp. nov., a species of obligately thermophilic hydrocarbon utilizing endosporeforming bacteria
    • Zarilla, K. & Perry, J. J. (1987). Bacillus thermoleovorans, sp. nov., a species of obligately thermophilic hydrocarbon utilizing endosporeforming bacteria. Syst Appl Microbiol 9, 258-264.
    • (1987) Syst. Appl. Microbiol. , vol.9 , pp. 258-264
    • Zarilla, K.1    Perry, J.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.