메뉴 건너뛰기




Volumn 13, Issue 8, 2012, Pages 3741-3745

Bicluster and pathway enrichment analysis of HCV-induced cirrhosis and hepatocellular carcinoma

Author keywords

Bicluster analysis; Cirrhosis; Hepatocellular carcinoma; Pathway enrichment

Indexed keywords


EID: 84873673046     PISSN: 15137368     EISSN: 2476762X     Source Type: Journal    
DOI: 10.7314/APJCP.2012.13.8.3741     Document Type: Article
Times cited : (20)

References (43)
  • 1
    • 82755183663 scopus 로고    scopus 로고
    • TP53 Mutations and HBX Status Analysis in Hepatocellular Carcinomas from Iran: Evidence for Lack of Association between HBV Genotype D and TP53 R249S Mutations
    • Abedi-Ardekani B, Gouas D, Villar S, et al (2011). TP53 Mutations and HBX Status Analysis in Hepatocellular Carcinomas from Iran: Evidence for Lack of Association between HBV Genotype D and TP53 R249S Mutations. Hepat Res Treat, 2011, 475965.
    • (2011) Hepat Res Treat , vol.2011 , pp. 475965
    • Abedi-Ardekani, B.1    Gouas, D.2    Villar, S.3
  • 3
    • 33745547361 scopus 로고    scopus 로고
    • New therapies for hepatocellular carcinoma
    • Avila MA, Berasain C, Sangro B, Prieto J (2006). New therapies for hepatocellular carcinoma. Oncogene, 25, 3866-84.
    • (2006) Oncogene , vol.25 , pp. 3866-3884
    • Avila, M.A.1    Berasain, C.2    Sangro, B.3    Prieto, J.4
  • 5
    • 0035911220 scopus 로고    scopus 로고
    • A dendritic cell-specific intercellular adhesion molecule 3-grabbing nonintegrin (DC-SIGN)-related protein is highly expressed on human liver sinusoidal endothelial cells and promotes HIV-1 infection
    • Bashirova AA, Geijtenbeek TB, van Duijnhoven GC, et al (2001). A dendritic cell-specific intercellular adhesion molecule 3-grabbing nonintegrin (DC-SIGN)-related protein is highly expressed on human liver sinusoidal endothelial cells and promotes HIV-1 infection. J Exp Med, 193, 671-8.
    • (2001) J Exp Med , vol.193 , pp. 671-678
    • Bashirova, A.A.1    Geijtenbeek, T.B.2    Van Duijnhoven, G.C.3
  • 6
    • 0036096420 scopus 로고    scopus 로고
    • Hepatocellular carcinoma: diagnosis and treatment
    • Befeler AS, Di Bisceglie AM (2002). Hepatocellular carcinoma: diagnosis and treatment. Gastroenterology, 122, 1609-19.
    • (2002) Gastroenterology , vol.122 , pp. 1609-1619
    • Befeler, A.S.1    Di Bisceglie, A.M.2
  • 7
    • 0001677717 scopus 로고
    • Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
    • Benjamini YH, Y (1995). Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. J Royal Stat Society Series B (Methodological), 57, 289-300.
    • (1995) J Royal Stat Society Series B (Methodological) , vol.57 , pp. 289-300
    • Benjamini, Y.H.Y.1
  • 8
    • 19944430095 scopus 로고    scopus 로고
    • Molecular profiling of early stage liver fibrosis in patients with chronic hepatitis C virus infection
    • Bieche I, Asselah T, Laurendeau I, et al (2005). Molecular profiling of early stage liver fibrosis in patients with chronic hepatitis C virus infection. Virology, 332, 130-44.
    • (2005) Virology , vol.332 , pp. 130-144
    • Bieche, I.1    Asselah, T.2    Laurendeau, I.3
  • 9
    • 0042968962 scopus 로고    scopus 로고
    • Molecular viral oncology of hepatocellular carcinoma
    • Block TM, Mehta AS, Fimmel CJ, Jordan R (2003). Molecular viral oncology of hepatocellular carcinoma. Oncogene, 22, 5093-107.
    • (2003) Oncogene , vol.22 , pp. 5093-5107
    • Block, T.M.1    Mehta, A.S.2    Fimmel, C.J.3    Jordan, R.4
  • 10
    • 0034856294 scopus 로고    scopus 로고
    • Clinical management of hepatocellular carcinoma Conclusions of the Barcelona-2000 EASL conference. European Association for the Study of the Liver
    • Bruix J, Sherman M, Llovet JM, et al (2001). Clinical management of hepatocellular carcinoma. Conclusions of the Barcelona-2000 EASL conference. European Association for the Study of the Liver. J Hepatol, 35, 421-30.
    • (2001) J Hepatol , vol.35 , pp. 421-430
    • Bruix, J.1    Sherman, M.2    Llovet, J.M.3
  • 11
    • 0038786861 scopus 로고    scopus 로고
    • Glypican-3: a novel serum and histochemical marker for hepatocellular carcinoma
    • Capurro M, Wanless IR, Sherman M, et al (2003). Glypican-3: a novel serum and histochemical marker for hepatocellular carcinoma. Gastroenterology, 125, 89-97.
    • (2003) Gastroenterology , vol.125 , pp. 89-97
    • Capurro, M.1    Wanless, I.R.2    Sherman, M.3
  • 12
    • 0037223571 scopus 로고    scopus 로고
    • Expression profiling in multistage hepatocarcinogenesis: identification of HSP70 as a molecular marker of early hepatocellular carcinoma
    • Chuma M, Sakamoto M, Yamazaki K, et al (2003). Expression profiling in multistage hepatocarcinogenesis: identification of HSP70 as a molecular marker of early hepatocellular carcinoma. Hepatology, 37, 198-207.
    • (2003) Hepatology , vol.37 , pp. 198-207
    • Chuma, M.1    Sakamoto, M.2    Yamazaki, K.3
  • 13
    • 33646134842 scopus 로고    scopus 로고
    • Hepatitis C virus entry: potential receptors and their biological functions
    • Cocquerel L, Voisset C, Dubuisson J (2006). Hepatitis C virus entry: potential receptors and their biological functions. J Gen Virol, 87, 1075-84.
    • (2006) J Gen Virol , vol.87 , pp. 1075-1084
    • Cocquerel, L.1    Voisset, C.2    Dubuisson, J.3
  • 14
    • 4644236862 scopus 로고    scopus 로고
    • L-SIGN (CD209L) and DC-SIGN (CD209) mediate transinfection of liver cells by hepatitis C virus
    • Cormier EG, Durso RJ, Tsamis F, et al (2004). L-SIGN (CD209L) and DC-SIGN (CD209) mediate transinfection of liver cells by hepatitis C virus. Proc Natl Acad Sci U S A, 101, 14067-72.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 14067-14072
    • Cormier, E.G.1    Durso, R.J.2    Tsamis, F.3
  • 15
    • 0033917644 scopus 로고    scopus 로고
    • Hepatitis C virus related cirrhosis: time to occurrence of hepatocellular carcinoma and death
    • Degos F, Christidis C, Ganne-Carrie N, et al (2000). Hepatitis C virus related cirrhosis: time to occurrence of hepatocellular carcinoma and death. Gut, 47, 131-6.
    • (2000) Gut , vol.47 , pp. 131-136
    • Degos, F.1    Christidis, C.2    Ganne-Carrie, N.3
  • 16
    • 0037083159 scopus 로고    scopus 로고
    • Alcohol and hepatocellular carcinoma: the effect of lifetime intake and hepatitis virus infections in men and women
    • Donato F, Tagger A, Gelatti U, et al (2002). Alcohol and hepatocellular carcinoma: the effect of lifetime intake and hepatitis virus infections in men and women. Am J Epidemiol, 155, 323-31.
    • (2002) Am J Epidemiol , vol.155 , pp. 323-331
    • Donato, F.1    Tagger, A.2    Gelatti, U.3
  • 17
    • 33644759114 scopus 로고    scopus 로고
    • The association between diabetes and hepatocellular carcinoma: a systematic review of epidemiologic evidence
    • El-Serag HB, Hampel H, Javadi F (2006). The association between diabetes and hepatocellular carcinoma: a systematic review of epidemiologic evidence. Clin Gastroenterol Hepatol, 4, 369-80.
    • (2006) Clin Gastroenterol Hepatol , vol.4 , pp. 369-380
    • El-Serag, H.B.1    Hampel, H.2    Javadi, F.3
  • 18
    • 78049485263 scopus 로고    scopus 로고
    • Estimates of worldwide burden of cancer in 2008 GLOBOCAN 2008
    • Ferlay J, Shin HR, Bray F, et al (2010). Estimates of worldwide burden of cancer in 2008: GLOBOCAN 2008. Int J Cancer, 127, 2893-917.
    • (2010) Int J Cancer , vol.127 , pp. 2893-2917
    • Ferlay, J.1    Shin, H.R.2    Bray, F.3
  • 19
    • 0037447255 scopus 로고    scopus 로고
    • L-SIGN (CD 209L) is a liver-specific capture receptor for hepatitis C virus
    • Gardner JP, Durso RJ, Arrigale RR, et al (2003). L-SIGN (CD 209L) is a liver-specific capture receptor for hepatitis C virus. Proc Natl Acad Sci USA, 100, 4498-503.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 4498-4503
    • Gardner, J.P.1    Durso, R.J.2    Arrigale, R.R.3
  • 20
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: open software development for computational biology and bioinformatics
    • Gentleman RC, Carey VJ, Bates DM, et al (2004). Bioconductor: open software development for computational biology and bioinformatics. Genome Biol, 5, R80.
    • (2004) Genome Biol , vol.5
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3
  • 21
    • 77954206273 scopus 로고    scopus 로고
    • FABIA: factor analysis for bicluster acquisition
    • Hochreiter S, Bodenhofer U, Heusel M, et al (2010). FABIA: factor analysis for bicluster acquisition. Bioinformatics, 26, 1520-7.
    • (2010) Bioinformatics , vol.26 , pp. 1520-1527
    • Hochreiter, S.1    Bodenhofer, U.2    Heusel, M.3
  • 22
    • 0031736586 scopus 로고    scopus 로고
    • Cell cycle regulators and human hepatocarcinogenesis
    • Hui AM, Makuuchi M, Li X (1998). Cell cycle regulators and human hepatocarcinogenesis. Hepatogastroenterology, 45, 1635-42.
    • (1998) Hepatogastroenterology , vol.45 , pp. 1635-1642
    • Hui, A.M.1    Makuuchi, M.2    Li, X.3
  • 23
    • 77954270316 scopus 로고    scopus 로고
    • Globaltest and GOEAST: two different approaches for Gene Ontology analysis
    • Hulsegge I, Kommadath A, Smits MA (2009). Globaltest and GOEAST: two different approaches for Gene Ontology analysis. BMC Proc, 3 Suppl 4, S10.
    • (2009) BMC Proc , vol.3 , Issue.4 SUPPL
    • Hulsegge, I.1    Kommadath, A.2    Smits, M.A.3
  • 24
    • 0027787824 scopus 로고
    • Differential expression of extracellular matrix proteins and integrins in hepatocellular carcinoma and chronic liver disease
    • Jaskiewicz K, Chasen MR, Robson SC (1993). Differential expression of extracellular matrix proteins and integrins in hepatocellular carcinoma and chronic liver disease. Anticancer Res, 13, 2229-37.
    • (1993) Anticancer Res , vol.13 , pp. 2229-2237
    • Jaskiewicz, K.1    Chasen, M.R.2    Robson, S.C.3
  • 25
    • 0037805576 scopus 로고    scopus 로고
    • The KEGG database
    • 91-101; discussion -3 19-28
    • Kanehisa M (2002). The KEGG database. Novartis Found Symp, 247, 91-101; discussion -3, 19-28, 244-52.
    • (2002) Novartis Found Symp , vol.247 , pp. 244-252
    • Kanehisa, M.1
  • 26
    • 13844322103 scopus 로고    scopus 로고
    • Distinct functions of DC-SIGN and its homologues L-SIGN (DC-SIGNR) and mSIGNR1 in pathogen recognition and immune regulation
    • Koppel EA, van Gisbergen KP, Geijtenbeek TB, van Kooyk Y (2005). Distinct functions of DC-SIGN and its homologues L-SIGN (DC-SIGNR) and mSIGNR1 in pathogen recognition and immune regulation. Cell Microbiol, 7, 157-65.
    • (2005) Cell Microbiol , vol.7 , pp. 157-165
    • Koppel, E.A.1    Van Gisbergen, K.P.2    Geijtenbeek, T.B.3    Van Kooyk, Y.4
  • 27
    • 34248173295 scopus 로고    scopus 로고
    • Is cirrhosis of the liver reversible?
    • Kumar M, Sarin SK (2007). Is cirrhosis of the liver reversible? Indian J Pediatr, 74, 393-9.
    • (2007) Indian J Pediatr , vol.74 , pp. 393-399
    • Kumar, M.1    Sarin, S.K.2
  • 28
    • 78649711427 scopus 로고    scopus 로고
    • The control of the metabolic switch in cancers by oncogenes and tumor suppressor genes
    • Levine AJ, Puzio-Kuter AM (2010). The control of the metabolic switch in cancers by oncogenes and tumor suppressor genes. Science, 330, 1340-4.
    • (2010) Science , vol.330 , pp. 1340-1344
    • Levine, A.J.1    Puzio-Kuter, A.M.2
  • 29
    • 84866634299 scopus 로고    scopus 로고
    • Finding consistent patterns: A nonparametric approach for identifying differential expression in RNA-Seq data
    • Li J, Tibshirani R (2011). Finding consistent patterns: A nonparametric approach for identifying differential expression in RNA-Seq data. Stat Methods Med Res.
    • (2011) Stat Methods Med Res
    • Li, J.1    Tibshirani, R.2
  • 30
    • 3542998055 scopus 로고    scopus 로고
    • C-type lectins L-SIGN and DC-SIGN capture and transmit infectious hepatitis C virus pseudotype particles
    • Lozach PY, Amara A, Bartosch B, et al (2004). C-type lectins L-SIGN and DC-SIGN capture and transmit infectious hepatitis C virus pseudotype particles. J Biol Chem, 279, 32035-45.
    • (2004) J Biol Chem , vol.279 , pp. 32035-32045
    • Lozach, P.Y.1    Amara, A.2    Bartosch, B.3
  • 31
    • 24044440971 scopus 로고    scopus 로고
    • BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
    • Maere S, Heymans K, Kuiper M (2005). BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics, 21, 3448-9.
    • (2005) Bioinformatics , vol.21 , pp. 3448-3449
    • Maere, S.1    Heymans, K.2    Kuiper, M.3
  • 32
    • 0033406372 scopus 로고    scopus 로고
    • Hepatitis C: the clinical spectrum of the disease
    • Marcellin P (1999). Hepatitis C: the clinical spectrum of the disease. J Hepatol, 31 Suppl 1, 9-16.
    • (1999) J Hepatol , vol.31 , Issue.1 SUPPL , pp. 9-16
    • Marcellin, P.1
  • 33
    • 7044229746 scopus 로고    scopus 로고
    • Newer markers for hepatocellular carcinoma
    • Marrero JA, Lok AS (2004). Newer markers for hepatocellular carcinoma. Gastroenterology, 127, S113-9.
    • (2004) Gastroenterology , vol.127
    • Marrero, J.A.1    Lok, A.S.2
  • 34
    • 0017324286 scopus 로고
    • Collagen polymorphism in normal and cirrhotic human liver
    • Seyer JM, Hutcheson ET, Kang AH (1977). Collagen polymorphism in normal and cirrhotic human liver. J Clin Invest, 59, 241-8.
    • (1977) J Clin Invest , vol.59 , pp. 241-248
    • Seyer, J.M.1    Hutcheson, E.T.2    Kang, A.H.3
  • 35
    • 0037442702 scopus 로고    scopus 로고
    • Identification of novel tumor markers in hepatitis C virus-associated hepatocellular carcinoma
    • Smith MW, Yue ZN, Geiss, et al (2003). Identification of novel tumor markers in hepatitis C virus-associated hepatocellular carcinoma. Cancer Res, 63, 859-64.
    • (2003) Cancer Res , vol.63 , pp. 859-864
    • Smith, M.W.1    Yue, Z.N.2    Geiss3
  • 36
    • 15844415447 scopus 로고    scopus 로고
    • An aflatoxinassociated mutational hotspot at codon 249 in the p53 tumor suppressor gene occurs in hepatocellular carcinomas from Mexico
    • Soini Y, Chia SC, Bennett WP, et al (1996). An aflatoxinassociated mutational hotspot at codon 249 in the p53 tumor suppressor gene occurs in hepatocellular carcinomas from Mexico. Carcinogenesis, 17, 1007-12.
    • (1996) Carcinogenesis , vol.17 , pp. 1007-1012
    • Soini, Y.1    Chia, S.C.2    Bennett, W.P.3
  • 37
    • 34248193253 scopus 로고    scopus 로고
    • Immune surveillance of tumors
    • Swann JB, Smyth MJ (2007). Immune surveillance of tumors. J Clin Invest, 117, 1137-46.
    • (2007) J Clin Invest , vol.117 , pp. 1137-1146
    • Swann, J.B.1    Smyth, M.J.2
  • 38
    • 17544383005 scopus 로고    scopus 로고
    • Activation of nuclear factor kappaB in hepatitis C virus infection: implications for pathogenesis and hepatocarcinogenesis
    • Tai DI, Tsai SL, Chen YM, et al (2000). Activation of nuclear factor kappaB in hepatitis C virus infection: implications for pathogenesis and hepatocarcinogenesis. Hepatology, 31, 656-64.
    • (2000) Hepatology , vol.31 , pp. 656-664
    • Tai, D.I.1    Tsai, S.L.2    Chen, Y.M.3
  • 39
    • 0036699940 scopus 로고    scopus 로고
    • Molecular pathogenesis of human hepatocellular carcinoma
    • Thorgeirsson SS, Grisham JW (2002). Molecular pathogenesis of human hepatocellular carcinoma. Nat Genet, 31, 339-46.
    • (2002) Nat Genet , vol.31 , pp. 339-346
    • Thorgeirsson, S.S.1    Grisham, J.W.2
  • 40
    • 12444279265 scopus 로고    scopus 로고
    • On the origin of cancer cells
    • Warburg O (1956). On the origin of cancer cells. Science, 123, 309-14.
    • Science , vol.123 , pp. 309-314
    • Warburg, O.1
  • 41
    • 0030774675 scopus 로고    scopus 로고
    • Cancer incidence in a population-based cohort of patients hospitalized with diabetes mellitus in Denmark
    • Wideroff L, Gridley G, Mellemkjaer L, et al (1997). Cancer incidence in a population-based cohort of patients hospitalized with diabetes mellitus in Denmark. J Natl Cancer Inst, 89, 1360-5.
    • (1997) J Natl Cancer Inst , vol.89 , pp. 1360-1365
    • Wideroff, L.1    Gridley, G.2    Mellemkjaer, L.3
  • 42
    • 79953853916 scopus 로고    scopus 로고
    • Detection of specific glycosaminoglycans and glycan epitopes by in vitro sulfation using recombinant sulfotransferases
    • Wu ZL, Prather B, Ethen CM, et al (2011). Detection of specific glycosaminoglycans and glycan epitopes by in vitro sulfation using recombinant sulfotransferases. Glycobiology, 21, 625-33.
    • (2011) Glycobiology , vol.21 , pp. 625-633
    • Wu, Z.L.1    Prather, B.2    Ethen, C.M.3
  • 43
    • 0035837040 scopus 로고    scopus 로고
    • Hepatitis C virus core protein enhances FADD-mediated apoptosis and suppresses TRADD signaling of tumor necrosis factor receptor
    • Zhu N, Ware CF, Lai MM (2001). Hepatitis C virus core protein enhances FADD-mediated apoptosis and suppresses TRADD signaling of tumor necrosis factor receptor. Virology, 283, 178-87.
    • (2001) Virology , vol.283 , pp. 178-187
    • Zhu, N.1    Ware, C.F.2    Lai, M.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.