Associations of polymorphisms in four candidate genes with carcass and/or meat-quality traits in two meat-type chicken lines

Animal Biotechnology

Volumn 24, Issue 1, 2013, Pages 53-65

  Sun, Yanfa ^a,b   Liu, Ranran ^b,c   Lu, Xiqing ^b   Hu, Yaodong ^b   Zhao, Guiping ^b,c   Zheng, Maiqing ^b,c   Chen, Jilan ^b,c   Wang, Hongrong ^a   Wen, Jie ^a,b,c  

^a YANGZHOU UNIVERSITY   (China)

^b INSTITUTE OF PLANT PROTECTION   (China)

^c AGRO ENVIRONMENTAL PROTECTION INSTITUTE   (China)

Author keywords

Association analysis; Candidate markers; Carcass traits; Chicken; Meat quality

Indexed keywords

ASSOCIATION ANALYSIS; CANDIDATE MARKERS; CARCASS TRAITS; CHICKEN; MEAT QUALITY;

ANIMALS; CYTOLOGY; MEATS;

GENES;

AVIAN PROTEIN; CALPAIN; CELLULAR RETINOL BINDING PROTEIN; FOLLITROPIN BETA SUBUNIT; FOLLITROPIN RECEPTOR; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA;

ADIPOSE TISSUE; ANIMAL; ARTICLE; BODY WEIGHT; CHICKEN; FEMALE; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENETIC MARKER; GENETICS; HAPLOTYPE; MALE; MEAT; REGRESSION ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; STANDARD;

ADIPOSE TISSUE; ANIMALS; AVIAN PROTEINS; BODY WEIGHT; CALPAIN; CHICKENS; FEMALE; FOLLICLE STIMULATING HORMONE, BETA SUBUNIT; GENE FREQUENCY; GENETIC MARKERS; HAPLOTYPES; LEAST-SQUARES ANALYSIS; LINKAGE DISEQUILIBRIUM; MALE; MEAT; POLYMORPHISM, SINGLE NUCLEOTIDE; PPAR GAMMA; RECEPTORS, FSH; RETINOL-BINDING PROTEINS, CELLULAR;

EID: 84873636462     PISSN: 10495398     EISSN: 15322378     Source Type: Journal    
DOI: 10.1080/10495398.2012.742909     Document Type: Article

References (43)

1. Campos RL, Nones K, Ledur MC, et al. Quantitative trait loci associated with fatness in a broiler-layer cross. Anim Genet 2009; 40:729-736
2. Williams JL. The use of marker-Assisted selection in animal breeding and biotechnology. Rev Sci Tech Off Int Epiz 2005; 24:379-391
3. Mullen AM, Stapleton PC, Corcoran D, Hamill RM, White A. Understanding meat quality through the application of genomic and proteomic approaches. Meat Sci 2006; 74:3-16
4. Gao Y, Du ZQ, Wei WH, et al. Mapping quantitative trait loci regulating chicken body composition traits. Anim Genet 2009; 40:952-954
5. Nadaf J, Pitel F, Gilbert H, et al. QTL for several metabolic traits map to loci controlling growth and body composition in an F2 intercross between high-And low-growth chicken lines. Physiol Genomics 2009; 38:241-249
6. Nassar MK, Goraga ZS, Brockmann GA. Quantitative trait loci segregating in crosses between New Hampshire and White Leghorn chicken lines: II. Muscle weight and carcass composition. Anim Genet 2012; 43:739-745
7. Tabor HK, Risch NJ, Myers RM. Candidate-gene approaches for studying complex genetic traits: Practical considerations. Nat Rev Genet 2002; 3:1-7
8. Zhang ZR, Liu YP, Jiang X, Du HR, Zhu Q. Study on association of single nucleotide polymorphism of CAPN1 gene with muscle fibre and carcass traits in quality chicken populations. J Anim Breed Genet 2008; 125:258-264
9. Han CS, Kim JO, Cheong IC, Shin HD. A single nucleotide polymorphism in CAPN1 associated with marbling score in Korean cattle. BMC Genet 2008; 9:33
10. Wang HB, Li H, Wang QG, et al. Profiling of chicken adipose tissue gene expression by genome array. BMC Genomics 2007; 8:193
11. Cui HX, Zhao GP, Liu RR, Zheng MQ, Chen JL, Wen J. FSH stimulates lipid biosynthesis in chicken adipose tissue by up-regulating the expression of its receptor FSHR. J Lipid Res 2012; 53:909-917
12. Geesink GH, Koohmaraie M. Effect of calpastatin on degradation of myofibrillar proteins by mu-calpain under postmortem conditions. J Anim Sci 1999; 77:2685-2692
13. Cheong HS, Yoon DH, Park BL, et al. A single nucleotide polymorphism in CAPN1 associated with marbling score in Korean cattle. BMC Genet 2008; 9:33
14. Bonilla CA, Rubio MS, Sifuentes, AM, et al. Association of CAPN1 316, CAPN1 4751 and TG5 markers with bovine meat quality traits in Mexico. Genet Mol Res 2010; 9:2395-2405
15. Pintos D, Corva PM. Association between molecular markers for beef tenderness and growth traits in Argentinian Angus cattle. Anim Genet 2011; 42:329-332
16. Hamm JK, el Jack AK, Pilch PF, Farmer SR. Role of PPAR gamma in regulating adipocyte differentiation and insulin-responsive glucose uptake. Ann N Y Acad Sci 1999; 892:134-145
17. Grimaldi PA. The roles of PPARs in adipocyte differentiation. Prog Lipid Res 2001; 40:269-281
18. Wang Y, Mu Y, Li H, et al. Peroxisome proliferator-Activated receptor-c gene: A keyregulator of adipocyte differentiation in chickens. Poul Sci 2008; 87:226-232
19. Ding N, Gao Y, Wang N, Li H. Functional analysis of the chicken PPAR gene 5'-flanking region and C=EBP-mediated gene regulation. Comp Biochem Physiol B 2011; 158: 297-303
20. Jameson JL, Becker CB, Lindell CM, Habener JF. Human follicle-stimulating hormone beta-subunit gene encodes multiple messenger ribonucleic acids. Mol Endocrinol 1988; 2:806-815
21. Rannikki AS, Zhang FP, Huhtaniemi IT. Ontogeny of follicle-Ttimulating- hormone receptor gene-expression in the rat testis and ovary. Mol Cell Endocrinol 1995; 107:199-208
22. Wang XF, Wang AG, Fu JL, Lin HC. Effects of ESR1, FSHB and RBP4 genes on litter size in a Large White and a Landrace Herd. ARC TIERZUCHT 2006; 49:64-70
23. Li FE, Mei SQ, Deng CY, et al. Association of a microsatellite flanking FSHB gene with reproductive traits and reproductive tract components in pigs. Czech J Anim Sci 2008; 53:139-144
24. Zhang SJ, Xiong YZ, Den CY, et al. FSHR gene mutation and its effect on litter size in pigs. Asian-Aust J Anim Sci 2004; 17:179-182
25. Li G, Sun DX, Yu Y, et al. Genetic effect of the follicle-stimulating hormone receptor gene on reproductive traits in Beijing You chickens. Poult Sci 2011; 90:2487-2492
26. Gong WH, Tang ZL, Han JL, et al. Mapping, tissue distribution and polymorphism of porcine retinol binding protein genes (RBP5 and RBP7). Asian-Aust J Anim Sci 2008; 21:1544-1550
27. Zhao GP, Chen JL, Zheng MQ, Wen J, Zhang Y. Correlated responses to selection for increased intramuscular fat in a Chinese quality chicken line. Poult Sci 2007; 86:2309-2314
28. Li WJ, Zhao GP, Chen JL, Zheng MQ, Wen J. Influence of dietary vitamin E supplementation on meat quality traits and gene expression related to lipid metabolism in the Beijing-you chicken. Brit Poul Sci 2009; 50:188-198
29. Cui HX, Zheng MQ, Liu RR, Zhao GP, Chen JL, Wen J. Liver dominant expression of fatty acid synthase (FAS) gene in two chicken breeds during intramuscular-fat development. Mol BiolRep 2012; 39:3479-3484
30. Allegue C, Gil R, Sanchez-Diz P, et al. A new approach to long QT syndrome mutation detection by Sequenom Mass ARRAY (R) system. Electrophoresis 2010; 31:1648-1655
31. Barrett JC, Fry B, Maller J, Daly MJ. Haploview: Analysis and visualization of LD and haplotype maps. Bioinformatics 2005; 21:263-265
32. Stephens M, Smith NJ, Donnelly P. A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 2001; 68:978-989
33. Gabriel SB, Schaffner SF, Nguyen H, Moore JM, Roy J, Blumenstiel B, Higgins J, DeFelice M, Lochner A, Faggart M, Liu-Cordero SN, Rotimi C, Adeyemo A, Cooper R, Ward R, Lander ES, Daly MJ, Altshuler D. The structure of haplotype blocks in the human genome. Science 2002; 296:2225-2229
34. Beltran JA, Jaime I, Santolaria P, Sanudo C, Alberti P, Roncales P. Effect of stress-induced high post-mortem pH on protease activity and tenderness of beef. Meat Sci 1997; 45:201-207
35. Shackelford SD, Koohmaraie M, Cundiff LV, Gregory KE, Rohrer GA, Savell JW. Heritabilities and phenotypic and genetic correlations for bovine postrigor calpastatin activity, intramuscular fat content, Warner-Bratzler shear force, retail product yield, and growth rate. J Anim Sci 1994; 72:857-863
36. Masud S, Ye S. Effect of the peroxisome proliferator activated receptor-c gene Pro12Ala variant on body mass index: A meta-Analysis. J Med Genet 2003; 40:773-780
37. Meng H, Zhao JG, Li ZH, Li H. Single nucleotide polymorphisms on peroxisome proliferator-Activated receptor genes associated with fatness traits in chicken. Asian-Aust J Anim Sci 2005; 18:1221-1225
38. Hu G, Wang SZ, Wang ZP, Li YM, Li Hui. Genetic epistasis analysis of 10 peroxisome proliferator-Activated receptor gamma-correlated genes in broiler lines divergently selected for abdominal fat content. Poul Sci 2010; 89:2341-2350
39. Han Q, Wang SZ, Hu G, Li H. Correlation between peroxisome proliferator-Activated receptor c 5' flanking-region haplotypes with the growth and body composition traits in chickens. Scientia Agricultura Sinica 2009; 42:3647-3654
40. Daly MJ, Rioux JD, Schaffner SF, Hudson TJ, Lander ES. High-resolution haplotype structure in the human genome. Nat Genet 2001; 29:229-232
41. Abasht B, Pitel F, Lagarrigue S, et al. Fatness QTL on chicken chromosome 5 and interaction with sex. Genet Sel Evol 2006; 38:297-311
42. Nie Q, Fang M, Xie L, et al. Molecular characterization of the Ghrelin and Ghrelin Receptor genes and effects on fat deposition in chicken and duck. J Biomed Biotechnol 2009; 567120
43. Ankra-Badu GA, Shriner D, Le Bihan-Duval E, et al. Mapping main, epistatic and sex-specific QTL for body composition in a chicken population divergently selected for low or high growth rate. BMC Genomics 2010; 11:107