메뉴 건너뛰기




Volumn 8, Issue 2, 2013, Pages

A High-Dimensional, Deep-Sequencing Study of Lung Adenocarcinoma in Female Never-Smokers

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; RNA;

EID: 84873529736     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0055596     Document Type: Article
Times cited : (65)

References (36)
  • 1
    • 77956838065 scopus 로고    scopus 로고
    • Advances in understanding cancer genomes through second-generation sequencing
    • Meyerson M, Gabriel S, Getz G, (2010) Advances in understanding cancer genomes through second-generation sequencing. Nature reviews Genetics 11: 685-696.
    • (2010) Nature Reviews Genetics , vol.11 , pp. 685-696
    • Meyerson, M.1    Gabriel, S.2    Getz, G.3
  • 3
    • 77953006634 scopus 로고    scopus 로고
    • The mutation spectrum revealed by paired genome sequences from a lung cancer patient
    • Lee W, Jiang Z, Liu J, Haverty PM, Guan Y, et al. (2010) The mutation spectrum revealed by paired genome sequences from a lung cancer patient. Nature 465: 473-477.
    • (2010) Nature , vol.465 , pp. 473-477
    • Lee, W.1    Jiang, Z.2    Liu, J.3    Haverty, P.M.4    Guan, Y.5
  • 4
    • 74449085934 scopus 로고    scopus 로고
    • A small-cell lung cancer genome with complex signatures of tobacco exposure
    • Pleasance ED, Stephens PJ, O'Meara S, McBride DJ, Meynert A, et al. (2010) A small-cell lung cancer genome with complex signatures of tobacco exposure. Nature 463: 184-190.
    • (2010) Nature , vol.463 , pp. 184-190
    • Pleasance, E.D.1    Stephens, P.J.2    O'Meara, S.3    McBride, D.J.4    Meynert, A.5
  • 7
    • 77953808473 scopus 로고    scopus 로고
    • Next-generation genomics: an integrative approach
    • Hawkins RD, Hon GC, Ren B, (2010) Next-generation genomics: an integrative approach. Nature reviews Genetics 11: 476-486.
    • (2010) Nature Reviews Genetics , vol.11 , pp. 476-486
    • Hawkins, R.D.1    Hon, G.C.2    Ren, B.3
  • 8
    • 84860478538 scopus 로고    scopus 로고
    • Science and technology: revealing genome networks for improving health Gastric Breast Cancer
    • Cho WC, (2011) Science and technology: revealing genome networks for improving health Gastric Breast Cancer. 11: 58-64.
    • (2011) , vol.11 , pp. 58-64
    • Cho, W.C.1
  • 10
    • 69949122158 scopus 로고    scopus 로고
    • VarScan: variant detection in massively parallel sequencing of individual and pooled samples
    • Koboldt DC, Chen K, Wylie T, Larson DE, McLellan MD, et al. (2009) VarScan: variant detection in massively parallel sequencing of individual and pooled samples. Bioinformatics 25: 2283-2285.
    • (2009) Bioinformatics , vol.25 , pp. 2283-2285
    • Koboldt, D.C.1    Chen, K.2    Wylie, T.3    Larson, D.E.4    McLellan, M.D.5
  • 11
    • 84859249611 scopus 로고    scopus 로고
    • JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data
    • Roth A, Ding J, Morin R, Crisan A, Ha G, et al. (2012) JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data. Bioinformatics 28: 907-913.
    • (2012) Bioinformatics , vol.28 , pp. 907-913
    • Roth, A.1    Ding, J.2    Morin, R.3    Crisan, A.4    Ha, G.5
  • 12
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome biology 10: R25.
    • (2009) Genome Biology , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 13
    • 79551494866 scopus 로고    scopus 로고
    • Accurate quantification of transcriptome from RNA-Seq data by effective length normalization
    • Lee S, Seo CH, Lim B, Yang JO, Oh J, et al. (2011) Accurate quantification of transcriptome from RNA-Seq data by effective length normalization. Nucleic acids research 39: e9.
    • (2011) Nucleic Acids Research , vol.39
    • Lee, S.1    Seo, C.H.2    Lim, B.3    Yang, J.O.4    Oh, J.5
  • 14
    • 79960126958 scopus 로고    scopus 로고
    • FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution
    • Ge H, Liu K, Juan T, Fang F, Newman M, et al. (2011) FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution. Bioinformatics 27: 1922-1928.
    • (2011) Bioinformatics , vol.27 , pp. 1922-1928
    • Ge, H.1    Liu, K.2    Juan, T.3    Fang, F.4    Newman, M.5
  • 15
    • 0038048222 scopus 로고    scopus 로고
    • FAK regulates biological processes important for the pathogenesis of cancer
    • Gabarra-Niecko V, Schaller MD, Dunty JM, (2003) FAK regulates biological processes important for the pathogenesis of cancer. Cancer metastasis reviews 22: 359-374.
    • (2003) Cancer Metastasis Reviews , vol.22 , pp. 359-374
    • Gabarra-Niecko, V.1    Schaller, M.D.2    Dunty, J.M.3
  • 16
    • 79952292499 scopus 로고    scopus 로고
    • Activation of multiple proto-oncogenic tyrosine kinases in breast cancer via loss of the PTPN12 phosphatase
    • Sun T, Aceto N, Meerbrey KL, Kessler JD, Zhou C, et al. (2011) Activation of multiple proto-oncogenic tyrosine kinases in breast cancer via loss of the PTPN12 phosphatase. Cell 144: 703-718.
    • (2011) Cell , vol.144 , pp. 703-718
    • Sun, T.1    Aceto, N.2    Meerbrey, K.L.3    Kessler, J.D.4    Zhou, C.5
  • 17
    • 0025022463 scopus 로고
    • PTC is a novel rearranged form of the ret proto-oncogene and is frequently detected in vivo in human thyroid papillary carcinomas
    • Grieco M, Santoro M, Berlingieri MT, Melillo RM, Donghi R, et al. (1990) PTC is a novel rearranged form of the ret proto-oncogene and is frequently detected in vivo in human thyroid papillary carcinomas. Cell 60: 557-563.
    • (1990) Cell , vol.60 , pp. 557-563
    • Grieco, M.1    Santoro, M.2    Berlingieri, M.T.3    Melillo, R.M.4    Donghi, R.5
  • 18
    • 84862776857 scopus 로고    scopus 로고
    • Identification of new ALK and RET gene fusions from colorectal and lung cancer biopsies
    • Lipson D, Capelletti M, Yelensky R, Otto G, Parker A, et al. (2012) Identification of new ALK and RET gene fusions from colorectal and lung cancer biopsies. Nature medicine 18: 382-384.
    • (2012) Nature Medicine , vol.18 , pp. 382-384
    • Lipson, D.1    Capelletti, M.2    Yelensky, R.3    Otto, G.4    Parker, A.5
  • 19
    • 2942552459 scopus 로고    scopus 로고
    • An automated method for finding molecular complexes in large protein interaction networks
    • Bader GD, Hogue CW, (2003) An automated method for finding molecular complexes in large protein interaction networks. BMC bioinformatics 4: 2.
    • (2003) BMC Bioinformatics , vol.4 , pp. 2
    • Bader, G.D.1    Hogue, C.W.2
  • 21
    • 0035235736 scopus 로고    scopus 로고
    • Mitotic kinases as regulators of cell division and its checkpoints
    • Nigg EA, (2001) Mitotic kinases as regulators of cell division and its checkpoints. Nature reviews Molecular cell biology 2: 21-32.
    • (2001) Nature Reviews Molecular Cell Biology , vol.2 , pp. 21-32
    • Nigg, E.A.1
  • 24
    • 80053258276 scopus 로고    scopus 로고
    • Overexpression of members of the microRNA-183 family is a risk factor for lung cancer: a case control study
    • Zhu W, Liu X, He J, Chen D, Hunag Y, et al. (2011) Overexpression of members of the microRNA-183 family is a risk factor for lung cancer: a case control study. BMC cancer 11: 393.
    • (2011) BMC Cancer , vol.11 , pp. 393
    • Zhu, W.1    Liu, X.2    He, J.3    Chen, D.4    Hunag, Y.5
  • 25
    • 78650385772 scopus 로고    scopus 로고
    • MicroRNA-21: A novel therapeutic target in human cancer
    • Pan X, Wang Z-X, Wang R, (2010) MicroRNA-21: A novel therapeutic target in human cancer. Cancer Biology & Therapy 10: 1224-1232.
    • (2010) Cancer Biology & Therapy , vol.10 , pp. 1224-1232
    • Pan, X.1    Wang, Z.-X.2    Wang, R.3
  • 26
    • 33644819964 scopus 로고    scopus 로고
    • Unique microRNA molecular profiles in lung cancer diagnosis and prognosis
    • Yanaihara N, Caplen N, Bowman E, Seike M, Kumamoto K, et al. (2006) Unique microRNA molecular profiles in lung cancer diagnosis and prognosis. Cancer cell 9: 189-198.
    • (2006) Cancer Cell , vol.9 , pp. 189-198
    • Yanaihara, N.1    Caplen, N.2    Bowman, E.3    Seike, M.4    Kumamoto, K.5
  • 27
    • 3543105225 scopus 로고    scopus 로고
    • Circular binary segmentation for the analysis of array-based DNA copy number data
    • Olshen AB, Venkatraman ES, Lucito R, Wigler M, (2004) Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics 5: 557-572.
    • (2004) Biostatistics , vol.5 , pp. 557-572
    • Olshen, A.B.1    Venkatraman, E.S.2    Lucito, R.3    Wigler, M.4
  • 30
    • 2542583103 scopus 로고    scopus 로고
    • Isolation and characterization of a novel DNA methyltransferase complex linking DNMT3B with components of the mitotic chromosome condensation machinery
    • Geiman TM, Sankpal UT, Robertson AK, Chen Y, Mazumdar M, et al. (2004) Isolation and characterization of a novel DNA methyltransferase complex linking DNMT3B with components of the mitotic chromosome condensation machinery. Nucleic acids research 32: 2716-2729.
    • (2004) Nucleic Acids Research , vol.32 , pp. 2716-2729
    • Geiman, T.M.1    Sankpal, U.T.2    Robertson, A.K.3    Chen, Y.4    Mazumdar, M.5
  • 31
    • 27744564626 scopus 로고    scopus 로고
    • The retinoblastoma gene and its product are targeted by ICBP90: a key mechanism in the G1/S transition during the cell cycle
    • Jeanblanc M, Mousli M, Hopfner R, Bathami K, Martinet N, et al. (2005) The retinoblastoma gene and its product are targeted by ICBP90: a key mechanism in the G1/S transition during the cell cycle. Oncogene 24: 7337-7345.
    • (2005) Oncogene , vol.24 , pp. 7337-7345
    • Jeanblanc, M.1    Mousli, M.2    Hopfner, R.3    Bathami, K.4    Martinet, N.5
  • 32
    • 77952243714 scopus 로고    scopus 로고
    • Hypoxia and RAS-signaling pathways converge on, and cooperatively downregulate, the RECK tumor-suppressor protein through microRNAs
    • Loayza-Puch F, Yoshida Y, Matsuzaki T, Takahashi C, Kitayama H, et al. (2010) Hypoxia and RAS-signaling pathways converge on, and cooperatively downregulate, the RECK tumor-suppressor protein through microRNAs. Oncogene 29: 2638-2648.
    • (2010) Oncogene , vol.29 , pp. 2638-2648
    • Loayza-Puch, F.1    Yoshida, Y.2    Matsuzaki, T.3    Takahashi, C.4    Kitayama, H.5
  • 34
    • 20044364933 scopus 로고    scopus 로고
    • EGFR mutations in non-small-cell lung cancer: analysis of a large series of cases and development of a rapid and sensitive method for diagnostic screening with potential implications on pharmacologic treatment
    • Marchetti A, Martella C, Felicioni L, Barassi F, Salvatore S, et al. (2005) EGFR mutations in non-small-cell lung cancer: analysis of a large series of cases and development of a rapid and sensitive method for diagnostic screening with potential implications on pharmacologic treatment. Journal of clinical oncology: official journal of the American Society of Clinical Oncology 23: 857-865.
    • (2005) Journal of Clinical Oncology: Official Journal of the American Society of Clinical Oncology , vol.23 , pp. 857-865
    • Marchetti, A.1    Martella, C.2    Felicioni, L.3    Barassi, F.4    Salvatore, S.5
  • 36
    • 54549094903 scopus 로고    scopus 로고
    • Somatic mutations affect key pathways in lung adenocarcinoma
    • Ding L, Getz G, Wheeler DA, Mardis ER, McLellan MD, et al. (2008) Somatic mutations affect key pathways in lung adenocarcinoma. Nature 455: 1069-1075.
    • (2008) Nature , vol.455 , pp. 1069-1075
    • Ding, L.1    Getz, G.2    Wheeler, D.A.3    Mardis, E.R.4    McLellan, M.D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.