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Volumn 110, Issue 6, 2013, Pages 2105-2110

Total cellular glycomics allows characterizing cells and streamlining the discovery process for cellular biomarkers

Author keywords

elimination in the presence of pyrazolone; Glycoblotting; Interglycomic correlations; Omics based biomarker discovery; Stemness

Indexed keywords

CELL MARKER; EPITOPE; GLYCAN DERIVATIVE; GLYCOPROTEIN; GLYCOSAMINOGLYCAN; GLYCOSPHINGOLIPID; OLIGOSACCHARIDE; STAGE SPECIFIC EMBRYO ANTIGEN; STAGE SPECIFIC EMBRYO ANTIGEN 3; STAGE SPECIFIC EMBRYO ANTIGEN 4; STAGE SPECIFIC EMBRYO ANTIGEN 5; TRA 1 60 EPITOPE; TRA 1 81 EPITOPE; UNCLASSIFIED DRUG;

EID: 84873473120     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1214233110     Document Type: Article
Times cited : (130)

References (38)
  • 1
    • 0032491416 scopus 로고    scopus 로고
    • Embryonic stem cell lines derived from human blastocysts
    • Thomson JA, et al. (1998) Embryonic stem cell lines derived from human blastocysts. Science 282(5391):1145-1147.
    • (1998) Science , vol.282 , Issue.5391 , pp. 1145-1147
    • Thomson, J.A.1
  • 2
    • 36248966518 scopus 로고    scopus 로고
    • Induction of pluripotent stem cells from adult human fibroblasts by defined factors
    • Takahashi K, et al. (2007) Induction of pluripotent stem cells from adult human fibroblasts by defined factors. Cell 131(5):861-872.
    • (2007) Cell , vol.131 , Issue.5 , pp. 861-872
    • Takahashi, K.1
  • 3
    • 0020997754 scopus 로고
    • Stage-specific embryonic antigens (SSEA-3 and-4) are epitopes of a unique globo-series ganglioside isolated from human teratocarcinoma cells
    • Kannagi R, et al. (1983) Stage-specific embryonic antigens (SSEA-3 and-4) are epitopes of a unique globo-series ganglioside isolated from human teratocarcinoma cells. EMBO J 2(12):2355-2361.
    • (1983) EMBO J , vol.2 , Issue.12 , pp. 2355-2361
    • Kannagi, R.1
  • 4
    • 22844438753 scopus 로고    scopus 로고
    • Comparative characteristics of three human embryonic stem cell lines
    • Lee JB, et al. (2005) Comparative characteristics of three human embryonic stem cell lines. Mol Cells 19(1):31-38.
    • (2005) Mol Cells , vol.19 , Issue.1 , pp. 31-38
    • Lee, J.B.1
  • 5
    • 0004106191 scopus 로고    scopus 로고
    • (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York), 2nd Ed
    • Varki A, et al. (2009) Essentials of Glycobiology (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York), 2nd Ed.
    • (2009) Essentials of Glycobiology
    • Varki, A.1
  • 7
    • 33748687969 scopus 로고    scopus 로고
    • Use of lectins for probing differentiated human embryonic stem cells for carbohydrates
    • Wearne KA, Winter HC, O'Shea K, Goldstein IJ (2006) Use of lectins for probing differentiated human embryonic stem cells for carbohydrates. Glycobiology 16(10): 981-990.
    • (2006) Glycobiology , vol.16 , Issue.10 , pp. 981-990
    • Wearne, K.A.1    Winter, H.C.2    O'Shea, K.3    Goldstein, I.J.4
  • 8
    • 79957972469 scopus 로고    scopus 로고
    • Glycome diagnosis of human induced pluripotent stem cells using lectin microarray
    • Tateno H, et al. (2011) Glycome diagnosis of human induced pluripotent stem cells using lectin microarray. J Biol Chem 286(23):20345-20353.
    • (2011) J Biol Chem , vol.286 , Issue.23 , pp. 20345-20353
    • Tateno, H.1
  • 9
    • 78650634454 scopus 로고    scopus 로고
    • Lectin microarray analysis of pluripotent and multipotent stem cells
    • Toyoda M, et al. (2011) Lectin microarray analysis of pluripotent and multipotent stem cells. Genes Cells 16(1):1-11.
    • (2011) Genes Cells , vol.16 , Issue.1 , pp. 1-11
    • Toyoda, M.1
  • 10
    • 34447320480 scopus 로고    scopus 로고
    • Integrated mass spectrometric strategy for characterizing the glycans from glycosphingolipids and glycoproteins: Direct identification of sialyl Le(x) in mice
    • Parry S, et al. (2007) Integrated mass spectrometric strategy for characterizing the glycans from glycosphingolipids and glycoproteins: Direct identification of sialyl Le(x) in mice. Glycobiology 17(6):646-654.
    • (2007) Glycobiology , vol.17 , Issue.6 , pp. 646-654
    • Parry, S.1
  • 11
    • 72649096402 scopus 로고    scopus 로고
    • Structural characterisation of neutrophil glycans by ultra sensitive mass spectrometric glycomics methodology
    • Babu P, et al. (2009) Structural characterisation of neutrophil glycans by ultra sensitive mass spectrometric glycomics methodology. Glycoconj J 26(8):975-986.
    • (2009) Glycoconj J , vol.26 , Issue.8 , pp. 975-986
    • Babu, P.1
  • 12
    • 82355184490 scopus 로고    scopus 로고
    • Qualitative and quantitative cellular glycomics of glycosphingolipids based on rhodococcal endoglycosylceramidase-assisted glycan cleavage, glycoblotting-assisted sample preparation, and matrix-assisted laser desorption ionization tandem time-of-flight mass spectrometry analysis
    • Fujitani N, et al. (2011) Qualitative and quantitative cellular glycomics of glycosphingolipids based on rhodococcal endoglycosylceramidase-assisted glycan cleavage, glycoblotting-assisted sample preparation, and matrix-assisted laser desorption ionization tandem time-of-flight mass spectrometry analysis. J Biol Chem 286(48):41669-41679.
    • (2011) J Biol Chem , vol.286 , Issue.48 , pp. 41669-41679
    • Fujitani, N.1
  • 13
    • 39449136167 scopus 로고    scopus 로고
    • Comprehensive approach to structural and functional glycomics based on chemoselective glycoblotting and sequential tag conversion
    • Furukawa J, et al. (2008) Comprehensive approach to structural and functional glycomics based on chemoselective glycoblotting and sequential tag conversion. Anal Chem 80(4):1094-1101.
    • (2008) Anal Chem , vol.80 , Issue.4 , pp. 1094-1101
    • Furukawa, J.1
  • 14
    • 34250313689 scopus 로고    scopus 로고
    • Rapid and simple solid-phase esterification of sialic acid residues for quantitative glycomics by mass spectrometry
    • Miura Y, Shinohara Y, Furukawa J, Nagahori N, Nishimura S (2007) Rapid and simple solid-phase esterification of sialic acid residues for quantitative glycomics by mass spectrometry. Chemistry 13(17):4797-4804.
    • (2007) Chemistry , vol.13 , Issue.17 , pp. 4797-4804
    • Miura, Y.1    Shinohara, Y.2    Furukawa, J.3    Nagahori, N.4    Nishimura, S.5
  • 15
    • 29244474601 scopus 로고    scopus 로고
    • High throughput quantitative glycomics and glycoformfocused proteomics of murine dermis and epidermis
    • Uematsu R, et al. (2005) High throughput quantitative glycomics and glycoformfocused proteomics of murine dermis and epidermis. Mol Cell Proteomics 4(12): 1977-1989.
    • (2005) Mol Cell Proteomics , vol.4 , Issue.12 , pp. 1977-1989
    • Uematsu, R.1
  • 16
    • 83655164793 scopus 로고    scopus 로고
    • Simultaneous analysis of heparan sulfate, chondroitin/dermatan sulfates, and hyaluronan disaccharides by glycoblotting-assisted sample preparation followed by single-step zwitter-ionic-hydrophilic interaction chromatography
    • Takegawa Y, et al. (2011) Simultaneous analysis of heparan sulfate, chondroitin/dermatan sulfates, and hyaluronan disaccharides by glycoblotting-assisted sample preparation followed by single-step zwitter-ionic-hydrophilic interaction chromatography. Anal Chem 83(24):9443-9449.
    • (2011) Anal Chem , vol.83 , Issue.24 , pp. 9443-9449
    • Takegawa, Y.1
  • 17
    • 82555187448 scopus 로고    scopus 로고
    • A versatile method for analysis of serine/threonine posttranslational modifications by β-elimination in the presence of pyrazolone analogues
    • Furukawa J, et al. (2011) A versatile method for analysis of serine/threonine posttranslational modifications by β-elimination in the presence of pyrazolone analogues. Anal Chem 83(23):9060-9067.
    • (2011) Anal Chem , vol.83 , Issue.23 , pp. 9060-9067
    • Furukawa, J.1
  • 18
    • 77951228197 scopus 로고    scopus 로고
    • Free oligosaccharides to monitor glycoprotein endoplasmic reticulum-associated degradation in Saccharomyces cerevisiae
    • Hirayama H, Seino J, Kitajima T, Jigami Y, Suzuki T (2010) Free oligosaccharides to monitor glycoprotein endoplasmic reticulum-associated degradation in Saccharomyces cerevisiae. J Biol Chem 285(16):12390-12404.
    • (2010) J Biol Chem , vol.285 , Issue.16 , pp. 12390-12404
    • Hirayama, H.1    Seino, J.2    Kitajima, T.3    Jigami, Y.4    Suzuki, T.5
  • 19
    • 33846548110 scopus 로고    scopus 로고
    • ER stress and diseases
    • Yoshida H (2007) ER stress and diseases. FEBS J 274(3):630-658.
    • (2007) FEBS J , vol.274 , Issue.3 , pp. 630-658
    • Yoshida, H.1
  • 20
    • 0029842929 scopus 로고    scopus 로고
    • Effect of structure on the signal strength of oligosaccharides in matrix-assisted laser desorption/ionization mass spectrometry on timeof-flight and magnetic sector instruments
    • Naven TJ, Harvey DJ (1996) Effect of structure on the signal strength of oligosaccharides in matrix-assisted laser desorption/ionization mass spectrometry on timeof-flight and magnetic sector instruments. Rapid Commun Mass Spectrom 10(11): 1361-1366.
    • (1996) Rapid Commun Mass Spectrom , vol.10 , Issue.11 , pp. 1361-1366
    • Naven, T.J.1    Harvey, D.J.2
  • 21
    • 0029741839 scopus 로고    scopus 로고
    • Stabilization of sialic acids in N-linked oligosaccharides and gangliosides for analysis by positive ion matrix-assisted laser desorption/ionization mass spectrometry
    • Powell AK, Harvey DJ (1996) Stabilization of sialic acids in N-linked oligosaccharides and gangliosides for analysis by positive ion matrix-assisted laser desorption/ionization mass spectrometry. Rapid Commun Mass Spectrom 10(9):1027-1032.
    • (1996) Rapid Commun Mass Spectrom , vol.10 , Issue.9 , pp. 1027-1032
    • Powell, A.K.1    Harvey, D.J.2
  • 22
    • 83255189758 scopus 로고    scopus 로고
    • Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage
    • International Stem Cell Initiative
    • Amps K, et al.; International Stem Cell Initiative (2011) Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage. Nat Biotechnol 29(12):1132-1144.
    • (2011) Nat Biotechnol , vol.29 , Issue.12 , pp. 1132-1144
    • Amps, K.1
  • 23
    • 77958533792 scopus 로고    scopus 로고
    • Establishment of induced pluripotent stem cells from human neonatal tissues
    • Fujioka T, Shimizu N, Yoshino K, Miyoshi H, Nakamura Y (2010) Establishment of induced pluripotent stem cells from human neonatal tissues. Hum Cell 23(3):113-118.
    • (2010) Hum Cell , vol.23 , Issue.3 , pp. 113-118
    • Fujioka, T.1    Shimizu, N.2    Yoshino, K.3    Miyoshi, H.4    Nakamura, Y.5
  • 24
    • 79960325950 scopus 로고    scopus 로고
    • Inhibition of protein degradation induces apoptosis through a microtubule-associated protein 1 light chain 3-mediated activation of caspase-8 at intracellular membranes
    • Pan JA, Ullman E, Dou Z, Zong WX (2011) Inhibition of protein degradation induces apoptosis through a microtubule-associated protein 1 light chain 3-mediated activation of caspase-8 at intracellular membranes. Mol Cell Biol 31(15):3158-3170.
    • (2011) Mol Cell Biol , vol.31 , Issue.15 , pp. 3158-3170
    • Pan, J.A.1    Ullman, E.2    Dou, Z.3    Zong, W.X.4
  • 25
    • 0025099705 scopus 로고
    • Increased protein turnover despite normal energy metabolism and responses to feeding in patients with lung cancer
    • Melville S, McNurlan MA, Calder AG, Garlick PJ (1990) Increased protein turnover despite normal energy metabolism and responses to feeding in patients with lung cancer. Cancer Res 50(4):1125-1131.
    • (1990) Cancer Res , vol.50 , Issue.4 , pp. 1125-1131
    • Melville, S.1    McNurlan, M.A.2    Calder, A.G.3    Garlick, P.J.4
  • 26
    • 9144264926 scopus 로고    scopus 로고
    • Induction of proteasome expression in skeletal muscle is attenuated by inhibitors of NF-kappa B activation
    • Wyke SM, Russell ST, Tisdale MJ (2004) Induction of proteasome expression in skeletal muscle is attenuated by inhibitors of NF-kappa B activation. Br J Cancer 91(9): 1742-1750.
    • (2004) Br J Cancer , vol.91 , Issue.9 , pp. 1742-1750
    • Wyke, S.M.1    Russell, S.T.2    Tisdale, M.J.3
  • 27
    • 80052749542 scopus 로고    scopus 로고
    • An antibody against SSEA-5 glycan on human pluripotent stem cells enables removal of teratoma-forming cells
    • Tang C, et al. (2011) An antibody against SSEA-5 glycan on human pluripotent stem cells enables removal of teratoma-forming cells. Nat Biotechnol 29(9):829-834.
    • (2011) Nat Biotechnol , vol.29 , Issue.9 , pp. 829-834
    • Tang, C.1
  • 28
    • 33645337676 scopus 로고    scopus 로고
    • DMRT-1 expression during NEC8 human embryonic carcinoma cell differentiation
    • Koji H, Yamada A, Nagasawa T, Gamou S (2006) DMRT-1 expression during NEC8 human embryonic carcinoma cell differentiation. Cancer Sci 97(4):277-282.
    • (2006) Cancer Sci , vol.97 , Issue.4 , pp. 277-282
    • Koji, H.1    Yamada, A.2    Nagasawa, T.3    Gamou, S.4
  • 29
    • 80051526718 scopus 로고    scopus 로고
    • The binding specificity of the marker antibodies Tra-1-60 and Tra-1-81 reveals a novel pluripotency-associated type 1 lactosamine epitope
    • Natunen S, et al. (2011) The binding specificity of the marker antibodies Tra-1-60 and Tra-1-81 reveals a novel pluripotency-associated type 1 lactosamine epitope. Glycobiology 21(9):1125-1130.
    • (2011) Glycobiology , vol.21 , Issue.9 , pp. 1125-1130
    • Natunen, S.1
  • 30
    • 84867825139 scopus 로고    scopus 로고
    • The analysis of Nglycans of cell membrane proteins from human hematopoietic cell lines reveals distinctions in their pattern
    • Reinke SO, Bayer M, Berger M, Hinderlich S, Blanchard V (2012) The analysis of Nglycans of cell membrane proteins from human hematopoietic cell lines reveals distinctions in their pattern. Biol Chem 393(8):731-747.
    • (2012) Biol Chem , vol.393 , Issue.8 , pp. 731-747
    • Reinke, S.O.1    Bayer, M.2    Berger, M.3    Hinderlich, S.4    Blanchard, V.5
  • 31
    • 84862906051 scopus 로고    scopus 로고
    • Global metabolic inhibitors of sialyl-and fucosyltransferases remodel the glycome
    • Rillahan CD, et al. (2012) Global metabolic inhibitors of sialyl-and fucosyltransferases remodel the glycome. Nat Chem Biol 8(7):661-668.
    • (2012) Nat Chem Biol , vol.8 , Issue.7 , pp. 661-668
    • Rillahan, C.D.1
  • 32
    • 77956280423 scopus 로고    scopus 로고
    • Mass spectrometric analysis of sulfated N-and O-glycans
    • Khoo KH, Yu SY (2010) Mass spectrometric analysis of sulfated N-and O-glycans. Methods Enzymol 478:3-26.
    • (2010) Methods Enzymol , vol.478 , pp. 3-26
    • Khoo, K.H.1    Yu, S.Y.2
  • 33
    • 70249134568 scopus 로고    scopus 로고
    • Enabling techniques and strategic workflow for sulfoglycomics based on mass spectrometry mapping and sequencing of permethylated sulfated glycans
    • Yu SY, Wu SW, Hsiao HH, Khoo KH (2009) Enabling techniques and strategic workflow for sulfoglycomics based on mass spectrometry mapping and sequencing of permethylated sulfated glycans. Glycobiology 19(10):1136-1149.
    • (2009) Glycobiology , vol.19 , Issue.10 , pp. 1136-1149
    • Yu, S.Y.1    Wu, S.W.2    Hsiao, H.H.3    Khoo, K.H.4
  • 34
    • 0035895782 scopus 로고    scopus 로고
    • Novel functions of complex carbohydrates elucidated by the mutant mice of glycosyltransferase genes
    • Furukawa K, et al. (2001) Novel functions of complex carbohydrates elucidated by the mutant mice of glycosyltransferase genes. Biochim Biophys Acta 1525(1-2): 1-12.
    • (2001) Biochim Biophys Acta , vol.1525 , Issue.1-2 , pp. 1-12
    • Furukawa, K.1
  • 35
    • 67649211352 scopus 로고    scopus 로고
    • The N-glycome of human embryonic stem cells
    • Satomaa T, et al. (2009) The N-glycome of human embryonic stem cells. BMC Cell Biol 10:42.
    • (2009) BMC Cell Biol , vol.10 , pp. 42
    • Satomaa, T.1
  • 36
    • 84859811827 scopus 로고    scopus 로고
    • Extensive determination of glycan heterogeneity reveals an unusual abundance of high mannose glycans in enriched plasma membranes of human embryonic stem cells
    • An HJ, et al. (2012) Extensive determination of glycan heterogeneity reveals an unusual abundance of high mannose glycans in enriched plasma membranes of human embryonic stem cells. Mol Cell Proteomics 11(4):M111-010660.
    • (2012) Mol Cell Proteomics , vol.11 , Issue.4
    • An, H.J.1
  • 37
    • 78651063493 scopus 로고    scopus 로고
    • Switching of the core structures of glycosphingolipids from globo-and lacto-to ganglio-series upon human embryonic stem cell differentiation
    • Liang YJ, et al. (2010) Switching of the core structures of glycosphingolipids from globo-and lacto-to ganglio-series upon human embryonic stem cell differentiation. Proc Natl Acad Sci USA 107(52):22564-22569.
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.52 , pp. 22564-22569
    • Liang, Y.J.1
  • 38
    • 14644417774 scopus 로고    scopus 로고
    • Stable isotope methods for high-precision proteomics
    • Schneider LV, Hall MP (2005) Stable isotope methods for high-precision proteomics. Drug Discov Today 10(5):353-363.
    • (2005) Drug Discov Today , vol.10 , Issue.5 , pp. 353-363
    • Schneider, L.V.1    Hall, M.P.2


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