Lectin microarray analysis of pluripotent and multipotent stem cells

Genes to Cells

Volumn 16, Issue 1, 2011, Pages 1-11

  Toyoda, Masashi ^a   Yamazaki Inoue, Mayu ^a   Itakura, Yoko ^b   Kuno, Atsushi ^b   Ogawa, Tomohisa ^c   Yamada, Masao ^c   Akutsu, Hidenori ^a   Takahashi, Yuji ^a   Kanzaki, Seiichi ^a   Narimatsu, Hisashi ^b   Hirabayashi, Jun ^b   Umezawa, Akihiro ^a  

^a NATIONAL RESEARCH INSTITUTE FOR CHILD HEALTH AND DEVELOPMENT   (Japan)

^b NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^c GP BioSceinces Ltd   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

LECTIN; LEUKOAGGLUTININ;

ARTICLE; CELL DIFFERENTIATION; CELL THERAPY; EUONYMUS; EUONYMUS EUROPAEUS; HUMAN; HUMAN CELL; MAACKIA; MAACKIA AMURENSIS; MICROARRAY ANALYSIS; MULTIPOTENT STEM CELL; PHASEOLUS VULGARIS; PLURIPOTENT STEM CELL; PRIORITY JOURNAL; QUALITY CONTROL; REGENERATIVE MEDICINE;

ANIMALS; CELL DIFFERENTIATION; CELL LINE; CELLS, CULTURED; EMBRYONIC STEM CELLS; HUMANS; INDUCED PLURIPOTENT STEM CELLS; LECTINS; MESENCHYMAL STEM CELLS; MICE; MICROARRAY ANALYSIS; MULTIPOTENT STEM CELLS; PLURIPOTENT STEM CELLS; POLYSACCHARIDES; QUALITY CONTROL;

EUONYMUS EUROPAEUS; IPS; MAACKIA AMURENSIS; MURINAE; PHASEOLUS VULGARIS;

EID: 78650634454     PISSN: 13569597     EISSN: 13652443     Source Type: Journal    
DOI: 10.1111/j.1365-2443.2010.01459.x     Document Type: Article

References (46)

1. Adewumi, O., Aflatoonian, B., Ahrlund-Richter, L., et al. (2007) Characterization of human embryonic stem cell lines by the international stem cell initiative. Nat. Biotechnol. 25, 803-816.
2. Alvarez-Manilla, G., Warren, N.L., Atwood, J. III, Orlando, R., Dalton, S. & Pierce, M. (2010) Glycoproteomic analysis of embryonic stem cells: identification of potential glycobiomarkers using lectin affinity chromatography of glycopeptides. J. Proteome Res. 9, 2062-2075.
3. Angeloni, S., Ridet, J.L., Kusy, N., Gao, H., Crevoisier, F., Guinchard, S., Kochhar, S., Sigrist, H. & Sprenger, N. (2005) Glycoprofiling with micro-arrays of glycoconjugates and lectins. Glycobiology 15, 31-41.
4. Aoi, T., Yae, K., Nakagawa, M., Ichisaka, T., Okita, K., Takahashi, K., Chiba, T. & Yamanaka, S. (2008) Generation of pluripotent stem cells from adult mouse liver and stomach cells. Science 321, 699-702.
5. Budnik, B.A., Lee, R.S. & Steen, J.A. (2006) Global methods for protein glycosylation analysis by mass spectrometry. Biochim. Biophys. Acta 1764, 1870-1880.
6. Capela, A. & Temple, S. (2002) LeX/ssea-1 is expressed by adult mouse CNS stem cells, identifying them as nonependymal. Neuron 35, 865-875.
7. Ebe, Y., Kuno, A., Uchiyama, N., Koseki-Kuno, S., Yamada, M., Sato, T., Narimatsu, H. & Hirabayashi, J. (2006) Application of lectin microarray to crude samples: differential glycan profiling of lec mutants. J. Biochem. 139, 323-327.
8. Imperiali, B. & O'Connor, S.E. (1999) Effect of N-linked glycosylation on glycopeptide and glycoprotein structure. Curr. Opin. Chem. Biol. 3, 643-649.
9. Jackson, C.J., Garbett, P.K., Nissen, B. & Schrieber, L. (1990) Binding of human endothelium to Ulex europaeus I-coated Dynabeads: application to the isolation of microvascular endothelium. J. Cell Sci. 96 (Pt 2), 257-262.
10. Kaichi, S., Hasegawa, K., Takaya, T., Yokoo, N., Mima, T., Kawamura, T., Morimoto, T., Ono, K., Baba, S., Doi, H., Yamanaka, S., Nakahata, T. & Heike, T. (2010) Cell line-dependent differentiation of induced pluripotent stem cells into cardiomyocytes in mice. Cardiovasc. Res. 88, 314-323.
11. Katrlik, J., Svitel, J., Gemeiner, P., Kozar, T. & Tkac, J. (2010) Glycan and lectin microarrays for glycomics and medicinal applications. Med. Res. Rev. 30, 394-418.
12. Kuno, A., Itakura, Y., Toyoda, M., Takahashi, Y., Yamada, Y., Umezawa, A. & Hirabayashi, J. (2008) Development of a data-mining system for differential profiling of cell glycoproteins based on lectin microarray. J. Proteomics Bioinform. 1, 068-072.
13. Kuno, A., Uchiyama, N., Koseki-Kuno, S., Ebe, Y., Takashima, S., Yamada, M. & Hirabayashi, J. (2005) Evanescent-field fluorescence-assisted lectin microarray: a new strategy for glycan profiling. Nat. Methods 2, 851-856.
14. Lee, J.H., Schell, M.J. & Roetzheim, R. (2009) Analysis of group randomized trials with multiple binary endpoints and small number of groups. PLoS ONE 4, e7265.
15. Makino, H., Toyoda, M., Matsumoto, K., et al. (2009) Mesenchymal to embryonic incomplete transition of human cells by chimeric OCT4/3 (POU5F1) with physiological co-activator EWS. Exp. Cell Res. 315, 2727-2740.
16. Maruyama, T., Umezawa, A., Kusakari, S., Kikuchi, H., Nozaki, M. & Hata, J. (1996) Heat shock induces differentiation of human embryonal carcinoma cells into trophectoderm lineages. Exp. Cell Res. 224, 123-127.
17. Matsumoto, S., Shibuya, I., Kusakari, S., Segawa, K., Uyama, T., Shimada, A. & Umezawa, A. (2005) Membranous osteogenesis system modeled with KUSA-A1 mature osteoblasts. Biochim. Biophys. Acta 1725, 57-63.
18. Nagata, S., Toyoda, M., Yamaguchi, S., Hirano, K., Makino, H., Nishino, K., Miyagawa, Y., Okita, H., Kiyokawa, N., Nakagawa, M., Yamanaka, S., Akutsu, H., Umezawa, A. & Tada, T. (2009) Efficient reprogramming of human and mouse primary extra-embryonic cells to pluripotent stem cells. Genes Cells 14, 1395-1404.
19. Osafune, K., Caron, L., Borowiak, M., Martinez, R.J., Fitz-Gerald, C.S., Sato, Y., Cowan, C.A., Chien, K.R. & Melton, D.A. (2008) Marked differences in differentiation propensity among human embryonic stem cell lines. Nat. Biotechnol. 26, 313-315.
20. Pilobello, K.T., Krishnamoorthy, L., Slawek, D. & Mahal, L.K. (2005) Development of a lectin microarray for the rapid analysis of protein glycopatterns. Chembiochem 6, 985-989.
21. Porter, A., Yue, T., Heeringa, L., Day, S., Suh, E. & Haab, B.B. (2010) A motif-based analysis of glycan array data to determine the specificities of glycan-binding proteins. Glycobiology 20, 369-380.
22. Ripley, B.D. (1996) Pattern Recognition and Neural Networks. Cambridge: Cambridge University Press.
23. Sasaki, N., Okishio, K., Ui-Tei, K., Saigo, K., Kinoshita-Toyoda, A., Toyoda, H., Nishimura, T., Suda, Y., Hayasaka, M., Hanaoka, K., Hitoshi, S., Ikenaka, K. & Nishihara, S. (2008) Heparan sulfate regulates self-renewal and pluripotency of embryonic stem cells. J. Biol. Chem. 283, 3594-3606.
24. Satomaa, T., Heiskanen, A., Mikkola, M., et al. (2009) The N-glycome of human embryonic stem cells. BMC Cell Biol. 10, 42.
25. Sharon, N. & Lis, H. (2004) History of lectins: from hemagglutinins to biological recognition molecules. Glycobiology 14, 53R-62R.
26. Sharov, A.A., Dudekula, D.B. & Ko, M.S. (2005) A web-based tool for principal component and significance analysis of microarray data. Bioinformatics (Oxford, England) 21, 2548-2549.
27. Spangrude, G.J., Heimfeld, S. & Weissman, I.L. (1988) Purification and characterization of mouse hematopoietic stem cells. Science 241, 58-62.
28. Sugiki, T., Uyama, T., Toyoda, M., Morioka, H., Kume, S., Miyado, K., Matsumoto, K., Saito, H., Tsumaki, N., Takahashi, Y., Toyama, Y. & Umezawa, A. (2007) Hyaline cartilage formation and enchondral ossification modeled with KUM5 and OP9 chondroblasts. J. Cell. Biochem. 100, 1240-1254.
29. Takahashi, K., Tanabe, K., Ohnuki, M., Narita, M., Ichisaka, T., Tomoda, K. & Yamanaka, S. (2007) Induction of pluripotent stem cells from adult human fibroblasts by defined factors. Cell 131, 861-872.
30. Tateno, H., Uchiyama, N., Kuno, A., Togayachi, A., Sato, T., Narimatsu, H. & Hirabayashi, J. (2007) A novel strategy for mammalian cell surface glycome profiling using lectin microarray. Glycobiology 17, 1138-1146.
31. Umezawa, A., Maruyama, T., Inazawa, J., Imai, S., Takano, T. & Hata, J. (1996) Induction of mcl1/EAT, Bcl-2 related gene, by retinoic acid or heat shock in the human embryonal carcinoma cells, NCR-G3. Cell Struct. Funct. 21, 143-150.
32. Umezawa, A., Maruyama, T., Segawa, K., Shadduck, R.K., Waheed, A. & Hata, J. (1992) Multipotent marrow stromal cell line is able to induce hematopoiesis in vivo. J. Cell. Physiol. 151, 197-205.
33. Umezawa, A., Tachibana, K., Harigaya, K., Kusakari, S., Kato, S., Watanabe, Y. & Takano, T. (1991) Colony-stimulating factor 1 expression is down-regulated during the adipocyte differentiation of H-1/A marrow stromal cells and induced by cachectin/tumor necrosis factor. Mol. Cell. Biol. 11, 920-927.
34. Varki, A. (1993) Biological roles of oligosaccharides: all of the theories are correct. Glycobiology 3, 97-130.
35. Venable, A., Mitalipova, M., Lyons, I., Jones, K., Shin, S., Pierce, M. & Stice, S. (2005) Lectin binding profiles of SSEA-4 enriched, pluripotent human embryonic stem cell surfaces. BMC Dev. Biol. 5, 15.
36. Venables, W.N. & Ripley, B.D. (2002) Modern Applied Statistics with S, 4th edn. New York: Springer.
37. Wearne, K.A., Winter, H.C., O'Shea, K. & Goldstein, I.J. (2006) Use of lectins for probing differentiated human embryonic stem cells for carbohydrates. Glycobiology 16, 981-990.
38. Wobus, A.M. & Boheler, K.R. (2005) Embryonic stem cells: prospects for developmental biology and cell therapy. Physiol. Rev. 85, 635-678.
39. Wollscheid, B., Bausch-Fluck, D., Henderson, C., O'Brien, R., Bibel, M., Schiess, R., Aebersold, R. & Watts, J.D. (2009) Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins. Nat. Biotechnol. 27, 378-386.
40. Wright, A.J. & Andrews, P.W. (2009) Surface marker antigens in the characterization of human embryonic stem cells. Stem Cell Res. 3, 3-11.
41. Xu, R.H., Peck, R.M., Li, D.S., Feng, X., Ludwig, T. & Thomson, J.A. (2005) Basic FGF and suppression of BMP signaling sustain undifferentiated proliferation of human ES cells. Nat. Methods 2, 185-190.
42. Yamada, Y., Sakurada, K., Takeda, Y., Gojo, S. & Umezawa, A. (2007) Single-cell-derived mesenchymal stem cells overexpressing Csx/Nkx2.5 and GATA4 undergo the stochastic cardiomyogenic fate and behave like transient amplifying cells. Exp. Cell Res. 313, 698-706.
43. Yamanaka, S. (2009) A fresh look at iPS cells. Cell 137, 13-17.
44. Yu, J., Vodyanik, M.A., Smuga-Otto, K., Antosiewicz- Bourget, J., Frane, J.L., Tian, S., Nie, J., Jonsdottir, G.A., Ruotti, V., Stewart, R., Slukvin, I.I. & Thomson, J.A. (2007) Induced pluripotent stem cell lines derived from human somatic cells. Science 318, 1917-1920.
45. Yue, T. & Haab, B.B. (2009) Microarrays in glycoproteomics research. Clin. Lab. Med. 29, 15-29.
46. Zanetta, J.P. & Vergoten, G. (2003) Lectin domains on cytokines. Adv. Exp. Med. Biol. 535, 107-124.