메뉴 건너뛰기




Volumn 10, Issue 5, 2005, Pages 353-363

Stable isotope methods for high-precision proteomics

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER; CYSTEINE; DEUTERIUM; ISOTOPE; LYSINE; MONOCLONAL ANTIBODY; PROSTATE SPECIFIC ANTIGEN;

EID: 14644417774     PISSN: 13596446     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1359-6446(05)03381-7     Document Type: Review
Times cited : (67)

References (59)
  • 1
    • 0033016717 scopus 로고    scopus 로고
    • Correlation between protein and mRNA abundance in yeast
    • Gygi S.P., et al. Correlation between protein and mRNA abundance in yeast. Mol. Cell. Biol. 19:1999;1720-1730
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 1720-1730
    • Gygi, S.P.1
  • 2
    • 0037116832 scopus 로고    scopus 로고
    • Use of proteomic patterns in serum to identify ovarian cancer
    • Petricoin E.F., et al. Use of proteomic patterns in serum to identify ovarian cancer. Lancet. 359:2002;572-577
    • (2002) Lancet , vol.359 , pp. 572-577
    • Petricoin, E.F.1
  • 3
    • 0034653417 scopus 로고    scopus 로고
    • Expression profiling in toxicology - Potentials and limitations
    • Steiner S., Anderson N.L. Expression profiling in toxicology - potentials and limitations. Toxicol. Lett. 112-113:2002;467-471
    • (2002) Toxicol. Lett. , vol.112-113 , pp. 467-471
    • Steiner, S.1    Anderson, N.L.2
  • 6
    • 0031848226 scopus 로고    scopus 로고
    • Proteome and proteomics: New technologies, new concepts, and new words
    • Anderson N.L., Anderson N.G. Proteome and proteomics: new technologies, new concepts, and new words. Electrophoresis. 19:1998;1853-1861
    • (1998) Electrophoresis , vol.19 , pp. 1853-1861
    • Anderson, N.L.1    Anderson, N.G.2
  • 7
    • 0034056940 scopus 로고    scopus 로고
    • The dynamic range of protein expression: A challenge for proteomic research
    • Corthais G.L., et al. The dynamic range of protein expression: a challenge for proteomic research. Electrophoresis. 21:2000;1104-1115
    • (2000) Electrophoresis , vol.21 , pp. 1104-1115
    • Corthais, G.L.1
  • 8
    • 0012671418 scopus 로고    scopus 로고
    • Defining the mandate of proteomics in the post-genomics era
    • Kenyon G.L., et al. Defining the mandate of proteomics in the post-genomics era. Mol. Cell. Proteomics. 1:2002;763-780
    • (2002) Mol. Cell. Proteomics , vol.1 , pp. 763-780
    • Kenyon, G.L.1
  • 9
    • 0037485656 scopus 로고    scopus 로고
    • Proteomic characterization of nipple aspirate fluid: Identification of potential biomarkers of breast cancer
    • Varnum S.M., et al. Proteomic characterization of nipple aspirate fluid: identification of potential biomarkers of breast cancer. Breast Cancer Res. Treat. 80:2003;87-97
    • (2003) Breast Cancer Res. Treat. , vol.80 , pp. 87-97
    • Varnum, S.M.1
  • 10
    • 0029839130 scopus 로고    scopus 로고
    • Prostate specific antigen levels in nipple aspirate fluid correlate with breast cancer risk
    • Sauter E.R., et al. Prostate specific antigen levels in nipple aspirate fluid correlate with breast cancer risk. Cancer Epidemiol. Biomarkers Prev. 5:1996;967-970
    • (1996) Cancer Epidemiol. Biomarkers Prev. , vol.5 , pp. 967-970
    • Sauter, E.R.1
  • 11
    • 1542408608 scopus 로고    scopus 로고
    • High-throughput comprehensive analysis of human plasma proteins: A step toward population proteomics
    • Nedelkov D., et al. High-throughput comprehensive analysis of human plasma proteins: a step toward population proteomics. Anal. Chem. 76:2004;1733-1737
    • (2004) Anal. Chem. , vol.76 , pp. 1733-1737
    • Nedelkov, D.1
  • 12
    • 0029293298 scopus 로고
    • Mass spectrometric immunoassay
    • Nelson R.W., et al. Mass spectrometric immunoassay. Anal. Chem. 67:1995;1153-1158
    • (1995) Anal. Chem. , vol.67 , pp. 1153-1158
    • Nelson, R.W.1
  • 13
    • 2942566253 scopus 로고    scopus 로고
    • Proteomic characterization of novel serum amyloid P component variants from human plasma and urine
    • Kiernan U.A., et al. Proteomic characterization of novel serum amyloid P component variants from human plasma and urine. Proteomics. 4:2004;1825-1829
    • (2004) Proteomics , vol.4 , pp. 1825-1829
    • Kiernan, U.A.1
  • 14
    • 0141816864 scopus 로고    scopus 로고
    • Detection of staphylococcal enterotoxin B via biomolecular interaction analysis mass spectrometry
    • Nedelkov D., Nelson R.W. Detection of staphylococcal enterotoxin B via biomolecular interaction analysis mass spectrometry. Appl. Environ. Microbiol. 69:2003;5212-5215
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 5212-5215
    • Nedelkov, D.1    Nelson, R.W.2
  • 15
    • 0037468458 scopus 로고    scopus 로고
    • Detection of novel truncated forms of human serum amyloid a protein in human plasma
    • Kiernan U.A., et al. Detection of novel truncated forms of human serum amyloid A protein in human plasma. FEBS Lett. 537:2003;166-170
    • (2003) FEBS Lett. , vol.537 , pp. 166-170
    • Kiernan, U.A.1
  • 16
    • 0038771153 scopus 로고    scopus 로고
    • Surface plasmon resonance mass spectrometry: Recent progress and outlooks
    • Nedelkov D., Nelson R.W. Surface plasmon resonance mass spectrometry: recent progress and outlooks. Trends Biotechnol. 21:2003;301-305
    • (2003) Trends Biotechnol. , vol.21 , pp. 301-305
    • Nedelkov, D.1    Nelson, R.W.2
  • 17
    • 0037432160 scopus 로고    scopus 로고
    • Detection of bound and free IGF-1 and IGF-2 in human plasma via biomolecular interaction analysis mass spectrometry
    • Nedelkov D., et al. Detection of bound and free IGF-1 and IGF-2 in human plasma via biomolecular interaction analysis mass spectrometry. FEBS Lett. 536:2003;130-134
    • (2003) FEBS Lett. , vol.536 , pp. 130-134
    • Nedelkov, D.1
  • 18
    • 0347517822 scopus 로고    scopus 로고
    • Pattern analysis of serum proteome distinguishes renal cell carcinoma from other urologic diseases and healthy persons
    • Won Y., et al. Pattern analysis of serum proteome distinguishes renal cell carcinoma from other urologic diseases and healthy persons. Proteomics. 3:2003;2310-2316
    • (2003) Proteomics , vol.3 , pp. 2310-2316
    • Won, Y.1
  • 19
    • 0036682618 scopus 로고    scopus 로고
    • Controlling deuterium isotope effects in comparative proteomics
    • Zhang R., et al. Controlling deuterium isotope effects in comparative proteomics. Anal. Chem. 74:2002;3662-3669
    • (2002) Anal. Chem. , vol.74 , pp. 3662-3669
    • Zhang, R.1
  • 20
    • 0037346492 scopus 로고    scopus 로고
    • Affinity selection techniques for proteomic studies
    • Wehr T. Affinity selection techniques for proteomic studies. LC/GC. 21:2003;274-284
    • (2003) LC/GC , vol.21 , pp. 274-284
    • Wehr, T.1
  • 22
    • 0013596620 scopus 로고
    • Deuterium as an indicator in the study of intermediary metabolism
    • Schoenheimer R., Rittenberg D. Deuterium as an indicator in the study of intermediary metabolism. Science. 82:1935;156-157
    • (1935) Science , vol.82 , pp. 156-157
    • Schoenheimer, R.1    Rittenberg, D.2
  • 23
    • 14644418630 scopus 로고
    • Method for measuring in vivo synthesis of biopolymers
    • Hellerstein M.K. Method for measuring in vivo synthesis of biopolymers. US Patent. 5:(338):Apr. 16 1994;686
    • (1994) US Patent , vol.5 , Issue.338 , pp. 686
    • Hellerstein, M.K.1
  • 24
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • Ong S.E., et al. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics. 1:2002;376-386
    • (2002) Mol. Cell. Proteomics , vol.1 , pp. 376-386
    • Ong, S.E.1
  • 25
    • 0032875697 scopus 로고    scopus 로고
    • Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
    • Gygi S.P., et al. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 17:1999;994-999
    • (1999) Nat. Biotechnol. , vol.17 , pp. 994-999
    • Gygi, S.P.1
  • 26
    • 0021058414 scopus 로고
    • A new mass-spectrometric C-terminal sequencing technique finds a similarity between γ-interferon and α2-interferon and identifies a proteolytically clipped γ-interferon that retains full antiviral activity
    • Rose K., et al. A new mass-spectrometric C-terminal sequencing technique finds a similarity between γ-interferon and α2-interferon and identifies a proteolytically clipped γ-interferon that retains full antiviral activity. Biochem. J. 215:1983;273-277
    • (1983) Biochem. J. , vol.215 , pp. 273-277
    • Rose, K.1
  • 27
    • 33847607585 scopus 로고    scopus 로고
    • Catalog # 271010 Rev. # 054001 (Stratagene, La Jolla, CA)
    • 18O] Labeling Kit: Instruction Manual, Catalog # 271010 Rev. # 054001 (Stratagene, La Jolla, CA, 2004).
    • (2004) 18O] Labeling Kit: Instruction Manual
  • 29
    • 0035226176 scopus 로고    scopus 로고
    • 18O labeling: A tool for proteomics
    • Stewart I.I., et al. 18O labeling: A tool for proteomics. Rapid Commun. Mass Spectrom. 15:2001;2456-2465
    • (2001) Rapid Commun. Mass Spectrom. , vol.15 , pp. 2456-2465
    • Stewart, I.I.1
  • 30
    • 0037040607 scopus 로고    scopus 로고
    • Global internal standard technology for comparative proteomics
    • Chakraborty A., Regnier F.E. Global internal standard technology for comparative proteomics. J. Chromatogr. A. 949:2002;173-178
    • (2002) J. Chromatogr. A. , vol.949 , pp. 173-178
    • Chakraborty, A.1    Regnier, F.E.2
  • 31
    • 14644400634 scopus 로고    scopus 로고
    • Affinity selected signature peptides for protein identification and quantification. WO0186306 (Nov. 15, 2001).
    • Regnier, F.E. et al. Affinity selected signature peptides for protein identification and quantification. WO0186306 (Nov. 15, 2001).
    • Regnier, F.E.1
  • 32
    • 0036766944 scopus 로고    scopus 로고
    • An isotope coding strategy for proteomics involving both amine and carboxy group labeling
    • Liu P., Regnier F.E. An isotope coding strategy for proteomics involving both amine and carboxy group labeling. J. Proteome Res. 1:2002;443-450
    • (2002) J. Proteome Res. , vol.1 , pp. 443-450
    • Liu, P.1    Regnier, F.E.2
  • 33
    • 0036523809 scopus 로고    scopus 로고
    • Minimizing resolution of isotopically coded peptides in comparative proteomics
    • Zhang R., Regnier F.E. Minimizing resolution of isotopically coded peptides in comparative proteomics. J. Proteome Res. 1:2002;139-147
    • (2002) J. Proteome Res. , vol.1 , pp. 139-147
    • Zhang, R.1    Regnier, F.E.2
  • 34
    • 14644424775 scopus 로고    scopus 로고
    • Controlling isotope effects during fractionation of analytes. WO03027682 (Apr. 3, 2003).
    • Regnier, F.E. and Zhang, R. Controlling isotope effects during fractionation of analytes. WO03027682 (Apr. 3, 2003).
    • Regnier, F.E.1    Zhang, R.2
  • 35
    • 14644403185 scopus 로고    scopus 로고
    • New technologies for expanding the dynamic range of protein identification in human serum. Poster presented Nashville, TN (May 24)
    • nd Annual Meeting. Nashville, TN (May 24, 2004).
    • (2004) nd Annual Meeting
    • Zhang, K.1
  • 36
    • 0035543071 scopus 로고    scopus 로고
    • A novel multifunctional labeling reagent for enhanced protein characterization with mass spectrometry
    • Peters E.C., Horn D. A novel multifunctional labeling reagent for enhanced protein characterization with mass spectrometry. Rapid Commun. Mass Spectrom. 15:2001;2387-2392
    • (2001) Rapid Commun. Mass Spectrom. , vol.15 , pp. 2387-2392
    • Peters, E.C.1    Horn, D.2
  • 37
    • 14644405121 scopus 로고    scopus 로고
    • Methods, mixtures, kits and compositions pertaining to analyte determination. WO 2004/070352 (Aug. 19, 2004).
    • Pappin, D.J.C. and Bartlet-Jones, M. Methods, mixtures, kits and compositions pertaining to analyte determination. WO 2004/070352 (Aug. 19, 2004).
    • Pappin, D.J.C.1    Bartlet-Jones, M.2
  • 38
    • 1242284993 scopus 로고    scopus 로고
    • Histidine-rich peptide selection and quantification in targeted proteomics
    • Ren D., et al. Histidine-rich peptide selection and quantification in targeted proteomics. J. Proteome Res. 3:2004;37-45
    • (2004) J. Proteome Res. , vol.3 , pp. 37-45
    • Ren, D.1
  • 39
    • 0037040565 scopus 로고    scopus 로고
    • Quantitative proteomics strategy involving the selection of peptides containing both cysteine and histidine from tryptic digests of cell lysates
    • Wang S., et al. Quantitative proteomics strategy involving the selection of peptides containing both cysteine and histidine from tryptic digests of cell lysates. J. Chromatogr. A. 949:2002;153-162
    • (2002) J. Chromatogr. A. , vol.949 , pp. 153-162
    • Wang, S.1
  • 40
    • 14644413017 scopus 로고    scopus 로고
    • Rapid quantitative analysis of proteins or protein function in complex mixtures. US6670194 (Dec. 30, 2003).
    • Aebersold, R.H.et al. Rapid quantitative analysis of proteins or protein function in complex mixtures. US6670194 (Dec. 30, 2003).
    • Aebersold, R.H.1
  • 41
    • 0034789979 scopus 로고    scopus 로고
    • Quanitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry
    • Han D.K., et al. Quanitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry. Nat. Biotechnol. 19:2001;946-951
    • (2001) Nat. Biotechnol. , vol.19 , pp. 946-951
    • Han, D.K.1
  • 42
    • 33746408762 scopus 로고    scopus 로고
    • The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the application of statistical tools for data analysis and interpretation
    • von Heller P.D., et al. The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the application of statistical tools for data analysis and interpretation. Mol. Cell. Proteomics. 2:2003;428-442
    • (2003) Mol. Cell. Proteomics , vol.2 , pp. 428-442
    • Von Heller, P.D.1
  • 43
    • 0347334566 scopus 로고    scopus 로고
    • 13C-isotope-coded affinity tag and multidimensional chromatography
    • 13C-isotope-coded affinity tag and multidimensional chromatography. Mol. Cell. Proteomics. 2:2003;299-314
    • (2003) Mol. Cell. Proteomics , vol.2 , pp. 299-314
    • Hansen, K.C.1
  • 44
    • 1042284932 scopus 로고    scopus 로고
    • Protein profiling with cleavable isotope coded affinity tag (cICAT) reagents: The yeast salinity stress response
    • Li J., et al. Protein profiling with cleavable isotope coded affinity tag (cICAT) reagents: the yeast salinity stress response. Mol. Cell. Proteomics. 2:2003;1198-1204
    • (2003) Mol. Cell. Proteomics , vol.2 , pp. 1198-1204
    • Li, J.1
  • 45
    • 1042275609 scopus 로고    scopus 로고
    • Chemical probes and tandem mass spectrometry: A strategy for the quantitative analysis of proteomes and subproteomes
    • Zhang H., et al. Chemical probes and tandem mass spectrometry: a strategy for the quantitative analysis of proteomes and subproteomes. Curr. Opin. Chem. Biol. 8:2004;66-75
    • (2004) Curr. Opin. Chem. Biol. , vol.8 , pp. 66-75
    • Zhang, H.1
  • 46
    • 0001644020 scopus 로고    scopus 로고
    • The human plasma proteome: History, character, and diagnostic prospects
    • Anderson N.L., Anderson N.G. The human plasma proteome: history, character, and diagnostic prospects. Mol. Cell. Proteomics. 1:2002;845-867
    • (2002) Mol. Cell. Proteomics , vol.1 , pp. 845-867
    • Anderson, N.L.1    Anderson, N.G.2
  • 48
    • 14644395685 scopus 로고    scopus 로고
    • Mass defect labeling for the determination of oligomer sequences. US20020172961 (Nov. 21, 2002).
    • Schneider, L.V.et al. Mass defect labeling for the determination of oligomer sequences. US20020172961 (Nov. 21, 2002).
    • Schneider, L.V.1
  • 49
    • 14644393160 scopus 로고    scopus 로고
    • Mass-defect tagging for proteomic analysis
    • Schneider L.V., et al. Mass-defect tagging for proteomic analysis. Genetic Eng. News. 24:2004;28-30
    • (2004) Genetic Eng. News , vol.24 , pp. 28-30
    • Schneider, L.V.1
  • 50
    • 14644392991 scopus 로고    scopus 로고
    • Isotope differentiated binding energy shift tags (IDBEST™) for improved targeted biomarker discovery and validation
    • Hall M.P., Schneider L.V. Isotope differentiated binding energy shift tags (IDBEST™) for improved targeted biomarker discovery and validation. Expert Rev. Proteomics. 1:2004;1-11
    • (2004) Expert Rev. Proteomics , vol.1 , pp. 1-11
    • Hall, M.P.1    Schneider, L.V.2
  • 51
    • 0041854168 scopus 로고    scopus 로고
    • 'Mass defect' tags for biomolecular mass spectrometry
    • Hall M.P., et al. 'Mass defect' tags for biomolecular mass spectrometry. J. Mass Spectrom. 38:2003;809-816
    • (2003) J. Mass Spectrom. , vol.38 , pp. 809-816
    • Hall, M.P.1
  • 52
    • 0842328433 scopus 로고    scopus 로고
    • Element-coded affinity tags for peptides and proteins
    • Whetstone P.A., et al. Element-coded affinity tags for peptides and proteins. Bioconjug. Chem. 15:2004;3-6
    • (2004) Bioconjug. Chem. , vol.15 , pp. 3-6
    • Whetstone, P.A.1
  • 53
    • 14644393810 scopus 로고    scopus 로고
    • Improvements in mass defect labeling for shotgun proteomic analysis. Poster presented Nashville, TN. (May 23-26)
    • nd Ann. Mtg.Am. Soc. Mass Spectrom., Nashville, TN. (May 23-26, 2004).
    • (2004) nd Ann. Mtg.Am. Soc. Mass Spectrom.
    • Hernandez, H.1
  • 54
    • 14644404484 scopus 로고    scopus 로고
    • Use of mass spectrometry fragmentation patterns of peptides to identify amino acid sequences in databases. US5538897 (July 23, 1996).
    • Yates, J.R., III and Eng, J.K. Use of mass spectrometry fragmentation patterns of peptides to identify amino acid sequences in databases. US5538897 (July 23, 1996).
    • Yates III, J.R.1    Eng, J.K.2
  • 55
    • 0028575316 scopus 로고
    • Error-tolerant identification of peptides in sequence databases by peptide sequence tags
    • Mann M., Wilm M. Error-tolerant identification of peptides in sequence databases by peptide sequence tags. Anal. Chem. 66:1994;4390-4399
    • (1994) Anal. Chem. , vol.66 , pp. 4390-4399
    • Mann, M.1    Wilm, M.2
  • 56
    • 2642520417 scopus 로고    scopus 로고
    • Top-down proteomics
    • Kelleher N.L. Top-down proteomics. Anal. Chem. 76:2004;197A-203A
    • (2004) Anal. Chem. , vol.76
    • Kelleher, N.L.1
  • 57
    • 0032176802 scopus 로고    scopus 로고
    • Two-dimensional mass spectrometry of biomolecules at the subfemtomole level
    • McLafferty F.W., et al. Two-dimensional mass spectrometry of biomolecules at the subfemtomole level. Curr. Opin. Chem. Biol. 2:1998;571-578
    • (1998) Curr. Opin. Chem. Biol. , vol.2 , pp. 571-578
    • McLafferty, F.W.1
  • 58
    • 14644422792 scopus 로고    scopus 로고
    • Methods for sequencing proteins. US6379971 (Apr. 30, 2002).
    • Schneider, L.V.et al. Methods for sequencing proteins. US6379971 (Apr. 30, 2002).
    • Schneider, L.V.1
  • 59
    • 14644431953 scopus 로고    scopus 로고
    • Method and reagent for specifically identifying and quantifying one or more proteins in a sample, WO04001420 (Dec. 31, 2003).
    • Krause, M. et al. Method and reagent for specifically identifying and quantifying one or more proteins in a sample, WO04001420 (Dec. 31, 2003).
    • Krause, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.