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Volumn 3, Issue 1, 2012, Pages

Whole-body gene expression pattern registration in Platynereis larvae

Author keywords

[No Author keywords available]

Indexed keywords

ANNELIDA; PLATYNEREIS; PLATYNEREIS DUMERILII;

EID: 84873457557     PISSN: None     EISSN: 20419139     Source Type: Journal    
DOI: 10.1186/2041-9139-3-27     Document Type: Article
Times cited : (50)

References (37)
  • 1
    • 33846601869 scopus 로고    scopus 로고
    • The Virtual Insect Brain protocol: creating and comparing standardized neuroanatomy
    • Jenett A, Schindelin JE, Heisenberg M. The Virtual Insect Brain protocol: creating and comparing standardized neuroanatomy. BMC Bioinforma 2006, 7:544.
    • (2006) BMC Bioinforma , vol.7 , pp. 544
    • Jenett, A.1    Schindelin, J.E.2    Heisenberg, M.3
  • 2
    • 69549097485 scopus 로고    scopus 로고
    • A 3D digital atlas of C. elegans and its application to single-cell analyses
    • 10.1038/nmeth.1366, 2882208, 19684595
    • Long F, Peng H, Liu X, Kim SK, Myers E. A 3D digital atlas of C. elegans and its application to single-cell analyses. Nat Methods 2009, 6:667-672. 10.1038/nmeth.1366, 2882208, 19684595.
    • (2009) Nat Methods , vol.6 , pp. 667-672
    • Long, F.1    Peng, H.2    Liu, X.3    Kim, S.K.4    Myers, E.5
  • 3
    • 70349826181 scopus 로고    scopus 로고
    • Anisometric brain dimorphism revisited: Implementation of a volumetric 3D standard brain in Manduca sexta
    • Jundi El B, Huetteroth W, Kurylas AE, Schachtner J. Anisometric brain dimorphism revisited: Implementation of a volumetric 3D standard brain in Manduca sexta. J Comp Neuro 2009, 517:210-225.
    • (2009) J Comp Neuro , vol.517 , pp. 210-225
    • Jundi El, B.1    Huetteroth, W.2    Kurylas, A.E.3    Schachtner, J.4
  • 4
    • 78650382289 scopus 로고    scopus 로고
    • 3D Standard Brain of the Red Flour Beetle Tribolium Castaneum: A Tool to Study Metamorphic Development and Adult Plasticity
    • 2845059, 20339482
    • Dreyer D, Vitt H, Dippel S, Goetz B, Jundi El B, Kollmann M, Huetteroth W, Schachtner J. 3D Standard Brain of the Red Flour Beetle Tribolium Castaneum: A Tool to Study Metamorphic Development and Adult Plasticity. Front Syst Neurosci 2010, 4:3. 2845059, 20339482.
    • (2010) Front Syst Neurosci , vol.4 , pp. 3
    • Dreyer, D.1    Vitt, H.2    Dippel, S.3    Goetz, B.4    Jundi El, B.5    Kollmann, M.6    Huetteroth, W.7    Schachtner, J.8
  • 6
    • 45849138933 scopus 로고    scopus 로고
    • Standardized atlas of the brain of the desert locust, Schistocerca gregaria
    • 10.1007/s00441-008-0620-x, 18504618
    • Kurylas AE, Rohlfing T, Krofczik S, Jenett A, Homberg U. Standardized atlas of the brain of the desert locust, Schistocerca gregaria. Cell Tissue Res 2008, 333:125-145. 10.1007/s00441-008-0620-x, 18504618.
    • (2008) Cell Tissue Res , vol.333 , pp. 125-145
    • Kurylas, A.E.1    Rohlfing, T.2    Krofczik, S.3    Jenett, A.4    Homberg, U.5
  • 7
    • 77953512788 scopus 로고    scopus 로고
    • Digital, three-dimensional average shaped atlas of the heliothis virescens brain with integrated gustatory and olfactory neurons
    • 2784302, 19949481
    • Kvello P, Løfaldli BB, Rybak J, Menzel R, Mustaparta H. Digital, three-dimensional average shaped atlas of the heliothis virescens brain with integrated gustatory and olfactory neurons. Front Syst Neurosci 2009, 3:14. 2784302, 19949481.
    • (2009) Front Syst Neurosci , vol.3 , pp. 14
    • Kvello, P.1    Løfaldli, B.B.2    Rybak, J.3    Menzel, R.4    Mustaparta, H.5
  • 11
    • 77956157767 scopus 로고    scopus 로고
    • Profiling by Image Registration Reveals Common Origin of Annelid Mushroom Bodies and Vertebrate Pallium
    • 10.1016/j.cell.2010.07.043, 20813265
    • Tomer R, Denes AS, Tessmar-Raible K, Arendt D. Profiling by Image Registration Reveals Common Origin of Annelid Mushroom Bodies and Vertebrate Pallium. Cell 2010, 142:800-809. 10.1016/j.cell.2010.07.043, 20813265.
    • (2010) Cell , vol.142 , pp. 800-809
    • Tomer, R.1    Denes, A.S.2    Tessmar-Raible, K.3    Arendt, D.4
  • 12
    • 35948992641 scopus 로고    scopus 로고
    • Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system
    • 10.1038/nature06293, 17972876
    • Livet J, Weissman TA, Kang H, Draft RW, Lu J, Bennis RA, Sanes JR, Lichtman JW. Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system. Nature 2007, 450:56-62. 10.1038/nature06293, 17972876.
    • (2007) Nature , vol.450 , pp. 56-62
    • Livet, J.1    Weissman, T.A.2    Kang, H.3    Draft, R.W.4    Lu, J.5    Bennis, R.A.6    Sanes, J.R.7    Lichtman, J.W.8
  • 13
    • 42649125890 scopus 로고    scopus 로고
    • Integrating technologies for comparing 3D gene expression domains in the developing chick limb
    • 10.1016/j.ydbio.2008.01.031, 2529376, 18355805
    • Fisher ME, Clelland AK, Bain A, Baldock RA, Murphy P, Downie H, Tickle C, Davidson DR, Buckland RA. Integrating technologies for comparing 3D gene expression domains in the developing chick limb. Dev Biol 2008, 317:13-23. 10.1016/j.ydbio.2008.01.031, 2529376, 18355805.
    • (2008) Dev Biol , vol.317 , pp. 13-23
    • Fisher, M.E.1    Clelland, A.K.2    Bain, A.3    Baldock, R.A.4    Murphy, P.5    Downie, H.6    Tickle, C.7    Davidson, D.R.8    Buckland, R.A.9
  • 16
    • 0043028206 scopus 로고    scopus 로고
    • Mutual-information-based registration of medical images: a survey
    • 10.1109/TMI.2003.815867, 12906253
    • Pluim JPW, Maintz JBA, Viergever MA. Mutual-information-based registration of medical images: a survey. IEEE Trans Med Imaging 2003, 22:986-1004. 10.1109/TMI.2003.815867, 12906253.
    • (2003) IEEE Trans Med Imaging , vol.22 , pp. 986-1004
    • Pluim, J.P.W.1    Maintz, J.B.A.2    Viergever, M.A.3
  • 19
    • 33846108375 scopus 로고    scopus 로고
    • 2,2′-Thiodiethanol: A new water soluble mounting medium for high resolution optical microscopy
    • Staudt T, Lang MC, Medda R, Engelhardt J, Hell SW. 2,2′-Thiodiethanol: A new water soluble mounting medium for high resolution optical microscopy. Microsc Res Tech 2006, 70:1-9.
    • (2006) Microsc Res Tech , vol.70 , pp. 1-9
    • Staudt, T.1    Lang, M.C.2    Medda, R.3    Engelhardt, J.4    Hell, S.W.5
  • 20
    • 84863205849 scopus 로고    scopus 로고
    • NIH Image to ImageJ: 25 years of image analysis
    • 10.1038/nmeth.2089, 22930834
    • Schneider CA, Rasband WS, Eliceiri KW. NIH Image to ImageJ: 25 years of image analysis. Nat Methods 2012, 9:671-675. 10.1038/nmeth.2089, 22930834.
    • (2012) Nat Methods , vol.9 , pp. 671-675
    • Schneider, C.A.1    Rasband, W.S.2    Eliceiri, K.W.3
  • 21
    • 34247115210 scopus 로고    scopus 로고
    • Cellular resolution expression profiling using confocal detection of NBT/BCIP precipitate by reflection microscopy
    • 10.2144/000112462, 17612299
    • Jékely G, Arendt D. Cellular resolution expression profiling using confocal detection of NBT/BCIP precipitate by reflection microscopy. Biotechniques 2007, 42:751-755. 10.2144/000112462, 17612299.
    • (2007) Biotechniques , vol.42 , pp. 751-755
    • Jékely, G.1    Arendt, D.2
  • 22
    • 84873469022 scopus 로고    scopus 로고
    • Jékely Lab Resources Page
    • Jékely Lab Resources Page [http://jekely-lab.tuebingen.mpg.de/], Jékely Lab Resources Page.
  • 23
    • 0035384145 scopus 로고    scopus 로고
    • Quantitative evaluation of convolution-based methods for medical image interpolation
    • 10.1016/S1361-8415(00)00040-2, 11516706
    • Meijering EH, Niessen WJ, Viergever MA. Quantitative evaluation of convolution-based methods for medical image interpolation. Medical Image Analysis 2001, 5:111-126. 10.1016/S1361-8415(00)00040-2, 11516706.
    • (2001) Medical Image Analysis , vol.5 , pp. 111-126
    • Meijering, E.H.1    Niessen, W.J.2    Viergever, M.A.3
  • 24
    • 0034842816 scopus 로고    scopus 로고
    • Nonrigid multimodality image registration
    • SPIE, San Diego, Mun SK, Antonuk LE, Chen C-T, Sonka M, Krupinski EA, Insana MF, Siegel EL, Huang HK, Shung KK, Hanson KM, Chakraborty DP, Clough AV, Yaffe MJ
    • Mattes D, Haynor DR, Vesselle H, Lewellyn TK, Eubank W. Nonrigid multimodality image registration. SPIE Proceedings 2012, 1609-1620. SPIE, San Diego, Mun SK, Antonuk LE, Chen C-T, Sonka M, Krupinski EA, Insana MF, Siegel EL, Huang HK, Shung KK, Hanson KM, Chakraborty DP, Clough AV, Yaffe MJ.
    • (2012) SPIE Proceedings , pp. 1609-1620
    • Mattes, D.1    Haynor, D.R.2    Vesselle, H.3    Lewellyn, T.K.4    Eubank, W.5
  • 25
    • 84873478450 scopus 로고    scopus 로고
    • ChannelMerger plugin
    • ChannelMerger plugin [http://imagejdocu.tudor.lu/doku.php?id=plugin:color:channel_merger_:start], ChannelMerger plugin.
  • 26
    • 34447122579 scopus 로고    scopus 로고
    • Fluorescent in situ hybridization employing the conventional NBT/BCIP chromogenic stain
    • 10.2144/000112476, 17612300
    • Trinh LA, McCutchen MD, Bonner-Fraser M, Fraser SE, Bumm LA, McCauley DW. Fluorescent in situ hybridization employing the conventional NBT/BCIP chromogenic stain. Biotechniques 2007, 42:756-759. 10.2144/000112476, 17612300.
    • (2007) Biotechniques , vol.42 , pp. 756-759
    • Trinh, L.A.1    McCutchen, M.D.2    Bonner-Fraser, M.3    Fraser, S.E.4    Bumm, L.A.5    McCauley, D.W.6
  • 27
    • 84873453607 scopus 로고    scopus 로고
    • FeatureJ Edges
    • FeatureJ Edges [http://imagescience.org/meijering/software/featurej/edges.html], FeatureJ Edges.
  • 28
    • 84869789377 scopus 로고    scopus 로고
    • Antibodies against conserved amidated neuropeptide epitopes enrich the comparative neurobiology toolbox
    • 10.1186/2041-9139-3-23, 3503879, 23020891
    • Conzelmann M, Jékely G. Antibodies against conserved amidated neuropeptide epitopes enrich the comparative neurobiology toolbox. EvoDevo 2012, 3:23. 10.1186/2041-9139-3-23, 3503879, 23020891.
    • (2012) EvoDevo , vol.3 , pp. 23
    • Conzelmann, M.1    Jékely, G.2
  • 29
    • 0036339788 scopus 로고    scopus 로고
    • Development of pigment-cup eyes in the polychaete Platynereis dumerilii and evolutionary conservation of larval eyes in Bilateria
    • Arendt D, Tessmar K, de Campos-Baptista M-IM, Dorresteijn A, Wittbrodt J. Development of pigment-cup eyes in the polychaete Platynereis dumerilii and evolutionary conservation of larval eyes in Bilateria. Development 2002, 129:1143-1154.
    • (2002) Development , vol.129 , pp. 1143-1154
    • Arendt, D.1    Tessmar, K.2    de Campos-Baptista, M.-I.M.3    Dorresteijn, A.4    Wittbrodt, J.5
  • 30
    • 34250900443 scopus 로고    scopus 로고
    • Conserved sensory-neurosecretory cell types in annelid and fish forebrain: insights into hypothalamus evolution
    • 10.1016/j.cell.2007.04.041, 17604726
    • Tessmar-Raible K, Raible F, Christodoulou F, Guy K, Rembold M, Hausen H, Arendt D. Conserved sensory-neurosecretory cell types in annelid and fish forebrain: insights into hypothalamus evolution. Cell 2007, 129:1389-1400. 10.1016/j.cell.2007.04.041, 17604726.
    • (2007) Cell , vol.129 , pp. 1389-1400
    • Tessmar-Raible, K.1    Raible, F.2    Christodoulou, F.3    Guy, K.4    Rembold, M.5    Hausen, H.6    Arendt, D.7
  • 31
    • 84873468470 scopus 로고    scopus 로고
    • ImageJ
    • ImageJ [http://rsbweb.nih.gov/ij/], ImageJ.
  • 32
    • 84873463719 scopus 로고    scopus 로고
    • Fiji
    • Fiji [http://fiji.sc/], Fiji.
  • 34
    • 0029276962 scopus 로고
    • A new criterion for automatic multilevel thresholding
    • 10.1109/83.366472, 18289986
    • Yen JC, Chang FJ, Chang S. A new criterion for automatic multilevel thresholding. IEEE Trans Image Process 1995, 4:370-378. 10.1109/83.366472, 18289986.
    • (1995) IEEE Trans Image Process , vol.4 , pp. 370-378
    • Yen, J.C.1    Chang, F.J.2    Chang, S.3
  • 35
    • 84861667866 scopus 로고    scopus 로고
    • Drosophila visual transduction
    • 10.1016/j.tins.2012.03.004, 22498302
    • Montell C. Drosophila visual transduction. Trends Neurosci 2012, 35:356-363. 10.1016/j.tins.2012.03.004, 22498302.
    • (2012) Trends Neurosci , vol.35 , pp. 356-363
    • Montell, C.1
  • 36
    • 34250821195 scopus 로고    scopus 로고
    • Phototransduction in ganglion-cell photoreceptors
    • 10.1007/s00424-007-0242-2, 17351786
    • Berson DM. Phototransduction in ganglion-cell photoreceptors. Pflugers Arch 2007, 454:849-855. 10.1007/s00424-007-0242-2, 17351786.
    • (2007) Pflugers Arch , vol.454 , pp. 849-855
    • Berson, D.M.1
  • 37
    • 1642512344 scopus 로고    scopus 로고
    • Evolution of eyes and photoreceptor cell types
    • Arendt D. Evolution of eyes and photoreceptor cell types. Int J Dev Biol 2003, 47:563-571.
    • (2003) Int J Dev Biol , vol.47 , pp. 563-571
    • Arendt, D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.