메뉴 건너뛰기




Volumn 117, Issue 5, 2013, Pages 845-854

N-H stretching vibrations of guanosine-cytidine base pairs in solution: Ultrafast dynamics, couplings, and line shapes

Author keywords

[No Author keywords available]

Indexed keywords

2D SPECTRA; ANHARMONIC COUPLINGS; BASE PAIRS; CHEMICALLY MODIFIED; CYTIDINE; FERMI RESONANCES; GUANOSINES; H/D EXCHANGE; LIFETIME BROADENING; LINE SHAPE; LOW-FREQUENCY MODES; POPULATION TRANSFER; SIGNAL STRENGTHS; STRETCHING MODES; STRETCHING VIBRATIONS; TIME EVOLUTIONS; TWO-DIMENSIONAL INFRARED (2D IR); ULTRA-FAST; ULTRA-FAST DYNAMICS;

EID: 84873434949     PISSN: 10895639     EISSN: 15205215     Source Type: Journal    
DOI: 10.1021/jp309237u     Document Type: Article
Times cited : (27)

References (40)
  • 1
    • 0038497542 scopus 로고
    • Molecular Structure of Nucleic Acids - A Structure for Deoxyribose Nucleic Acid
    • Watson, J. D.; Crick, F. H. C. Molecular Structure of Nucleic Acids-A Structure for Deoxyribose Nucleic Acid Nature 1953, 171, 737-738
    • (1953) Nature , vol.171 , pp. 737-738
    • Watson, J.D.1    Crick, F.H.C.2
  • 3
    • 0017194965 scopus 로고
    • RNA Double-Helical Fragments at Atomic Resolution - Crystal-Structure of Sodium Guanylyl-3′,5′-Cytidine Nonahydrate
    • Rosenberg, J. M.; Seeman, N. C.; Day, R. O.; Rich, A. RNA Double-Helical Fragments at Atomic Resolution-Crystal-Structure of Sodium Guanylyl-3′, 5′-Cytidine Nonahydrate J. Mol. Biol. 1976, 104, 145-167
    • (1976) J. Mol. Biol , vol.104 , pp. 145-167
    • Rosenberg, J.M.1    Seeman, N.C.2    Day, R.O.3    Rich, A.4
  • 5
    • 79958234264 scopus 로고    scopus 로고
    • Dynamics and Couplings of N-H Stretching Excitations of Guanosine-Cytidine Base Pairs in Solution
    • Yang, M.; Szyc, Ł.; Röttger, K.; Fidder, H.; Nibbering, E. T. J.; Elsaesser, T.; Temps, F. Dynamics and Couplings of N-H Stretching Excitations of Guanosine-Cytidine Base Pairs in Solution J. Phys. Chem. B 2011, 115, 5484-5492
    • (2011) J. Phys. Chem. B , vol.115 , pp. 5484-5492
    • Yang, M.1    Szyc, Ł.2    Röttger, K.3    Fidder, H.4    Nibbering, E.T.J.5    Elsaesser, T.6    Temps, F.7
  • 6
    • 80053313398 scopus 로고    scopus 로고
    • Anharmonic Vibrational Modes of Nucleic Acid Bases Revealed by 2D IR Spectroscopy
    • Peng, C. S.; Jones, K. C.; Tokmakoff, A. Anharmonic Vibrational Modes of Nucleic Acid Bases Revealed by 2D IR Spectroscopy J. Am. Chem. Soc. 2011, 133, 15650-15660
    • (2011) J. Am. Chem. Soc , vol.133 , pp. 15650-15660
    • Peng, C.S.1    Jones, K.C.2    Tokmakoff, A.3
  • 7
    • 33746924035 scopus 로고    scopus 로고
    • DNA Vibrational Coupling Revealed with Two-Dimensional Infrared Spectroscopy: Insight into why Vibrational Spectroscopy is Sensitive to DNA Structure
    • Krummel, A. T.; Zanni, M. T. DNA Vibrational Coupling Revealed with Two-Dimensional Infrared Spectroscopy: Insight into why Vibrational Spectroscopy is Sensitive to DNA Structure J. Phys. Chem. B 2006, 110, 13991-14000
    • (2006) J. Phys. Chem. B , vol.110 , pp. 13991-14000
    • Krummel, A.T.1    Zanni, M.T.2
  • 8
    • 76849088415 scopus 로고    scopus 로고
    • Anharmonic Vibrational Signatures of DNA Bases and Watson-Crick Base Pairs
    • Wang, G. X.; Ma, X. Y.; Wang, J. P. Anharmonic Vibrational Signatures of DNA Bases and Watson-Crick Base Pairs Chin. J. Chem. Phys. 2009, 22, 563-570
    • (2009) Chin. J. Chem. Phys , vol.22 , pp. 563-570
    • Wang, G.X.1    Ma, X.Y.2    Wang, J.P.3
  • 9
    • 0141794723 scopus 로고    scopus 로고
    • Inter and Intrastrand Vibrational Coupling in DNA Studied with Heterodyned 2D-IR Spectroscopy
    • Krummel, A. T.; Mukherjee, P.; Zanni, M. T. Inter and Intrastrand Vibrational Coupling in DNA Studied with Heterodyned 2D-IR Spectroscopy J. Phys. Chem. B 2003, 107, 9165-9169
    • (2003) J. Phys. Chem. B , vol.107 , pp. 9165-9169
    • Krummel, A.T.1    Mukherjee, P.2    Zanni, M.T.3
  • 10
    • 34547681413 scopus 로고    scopus 로고
    • Ultrafast Electronic Relaxation in Guanosine is Promoted by Hydrogen Bonding with Cytidine
    • Schwalb, N. K.; Temps, F. Ultrafast Electronic Relaxation in Guanosine is Promoted by Hydrogen Bonding with Cytidine J. Am. Chem. Soc. 2007, 129, 9272-9273
    • (2007) J. Am. Chem. Soc , vol.129 , pp. 9272-9273
    • Schwalb, N.K.1    Temps, F.2
  • 11
    • 53749094033 scopus 로고    scopus 로고
    • Base Sequence and Higher-Order Structure Induce the Complex Excited-State Dynamics in DNA
    • Schwalb, N. K.; Temps, F. Base Sequence and Higher-Order Structure Induce the Complex Excited-State Dynamics in DNA Science 2008, 322, 243-245
    • (2008) Science , vol.322 , pp. 243-245
    • Schwalb, N.K.1    Temps, F.2
  • 12
    • 72949111859 scopus 로고    scopus 로고
    • Ultrashort Fluorescence Lifetimes of Hydrogen-Bonded Base Pairs of Guanosine and Cytidine in Solution
    • Schwalb, N. K.; Michalak, T.; Temps, F. Ultrashort Fluorescence Lifetimes of Hydrogen-Bonded Base Pairs of Guanosine and Cytidine in Solution J. Phys. Chem. B 2009, 113, 16365-16376
    • (2009) J. Phys. Chem. B , vol.113 , pp. 16365-16376
    • Schwalb, N.K.1    Michalak, T.2    Temps, F.3
  • 14
    • 52349096953 scopus 로고    scopus 로고
    • Ultrafast Vibrational Dynamics of Adenine-Thymine Base Pairs in DNA Oligomers
    • Dwyer, J. R.; Szyc, Ł.; Nibbering, E. T. J.; Elsaesser, T. Ultrafast Vibrational Dynamics of Adenine-Thymine Base Pairs in DNA Oligomers J. Phys. Chem. B 2008, 112, 11194-11197
    • (2008) J. Phys. Chem. B , vol.112 , pp. 11194-11197
    • Dwyer, J.R.1    Szyc, Ł.2    Nibbering, E.T.J.3    Elsaesser, T.4
  • 15
    • 77952416829 scopus 로고    scopus 로고
    • Ultrafast Vibrational Dynamics and Local Interactions of Hydrated DNA
    • Szyc, Ł.; Yang, M.; Nibbering, E. T. J.; Elsaesser, T. Ultrafast Vibrational Dynamics and Local Interactions of Hydrated DNA Angew. Chem., Int. Ed. 2010, 49, 3598-3610
    • (2010) Angew. Chem., Int. Ed , vol.49 , pp. 3598-3610
    • Szyc, Ł.1    Yang, M.2    Nibbering, E.T.J.3    Elsaesser, T.4
  • 16
    • 79952820128 scopus 로고    scopus 로고
    • Femtosecond Two-Dimensional Infrared Spectroscopy of Adenine-Thymine Base Pairs in DNA Oligomers
    • Yang, M.; Szyc, Ł.; Elsaesser, T. Femtosecond Two-Dimensional Infrared Spectroscopy of Adenine-Thymine Base Pairs in DNA Oligomers J. Phys. Chem. B 2011, 115, 1262-1267
    • (2011) J. Phys. Chem. B , vol.115 , pp. 1262-1267
    • Yang, M.1    Szyc, Ł.2    Elsaesser, T.3
  • 17
    • 0034700502 scopus 로고    scopus 로고
    • Pairing of Isolated Nucleic-Acid Bases in the Absence of the DNA Backbone
    • Nir, E.; Kleinermanns, K.; de Vries, M. S. Pairing of Isolated Nucleic-Acid Bases in the Absence of the DNA Backbone Nature 2000, 408, 949-951
    • (2000) Nature , vol.408 , pp. 949-951
    • Nir, E.1    Kleinermanns, K.2    De Vries, M.S.3
  • 18
    • 0036206634 scopus 로고    scopus 로고
    • Pairing of the Nucleobases Guanine and Cytosine in the Gas Phase Studied by IR-UV Double-Resonance Spectroscopy and Ab Initio Calculations
    • Nir, E.; Janzen, C.; Imhof, P.; Kleinermanns, K.; de Vries, M. S. Pairing of the Nucleobases Guanine and Cytosine in the Gas Phase Studied by IR-UV Double-Resonance Spectroscopy and Ab Initio Calculations Phys. Chem. Chem. Phys. 2002, 4, 732-739
    • (2002) Phys. Chem. Chem. Phys , vol.4 , pp. 732-739
    • Nir, E.1    Janzen, C.2    Imhof, P.3    Kleinermanns, K.4    De Vries, M.S.5
  • 21
    • 84855646415 scopus 로고    scopus 로고
    • Localization and Anharmonicity of the Vibrational Modes for GC Watson-Crick and Hoogsteen Base Pairs
    • Bende, A.; Bogdan, D.; Muntean, C. M.; Morari, C. Localization and Anharmonicity of the Vibrational Modes for GC Watson-Crick and Hoogsteen Base Pairs J. Mol. Model. 2011, 17, 3265-3274
    • (2011) J. Mol. Model , vol.17 , pp. 3265-3274
    • Bende, A.1    Bogdan, D.2    Muntean, C.M.3    Morari, C.4
  • 22
    • 84856848547 scopus 로고    scopus 로고
    • Modelling Vibrational Coupling in DNA Oligomers: A Computational Strategy Combining QM and Continuum Solvation Models
    • Biancardi, A.; Cammi, R.; Cappelli, C.; Mennucci, B.; Tomasi, J. Modelling Vibrational Coupling in DNA Oligomers: A Computational Strategy Combining QM and Continuum Solvation Models Theor. Chem. Acc. 2012, 131, 1157
    • (2012) Theor. Chem. Acc , vol.131 , pp. 1157
    • Biancardi, A.1    Cammi, R.2    Cappelli, C.3    Mennucci, B.4    Tomasi, J.5
  • 23
    • 12944288052 scopus 로고    scopus 로고
    • Multiple Tautomers of Cytosine Identified and Characterized by Infrared Laser Spectroscopy in Helium Nanodroplets: Probing Structure Using Vibrational Transition Moment Angles
    • Choi, M. Y.; Dong, F.; Miller, R. E. Multiple Tautomers of Cytosine Identified and Characterized by Infrared Laser Spectroscopy in Helium Nanodroplets: Probing Structure Using Vibrational Transition Moment Angles Philos. Trans. R. Soc. London A 2005, 363, 393-412
    • (2005) Philos. Trans. R. Soc. London A , vol.363 , pp. 393-412
    • Choi, M.Y.1    Dong, F.2    Miller, R.E.3
  • 24
    • 43449136205 scopus 로고    scopus 로고
    • Coherent Two-Dimensional Optical Spectroscopy
    • Cho, M. H. Coherent Two-Dimensional Optical Spectroscopy Chem. Rev. 2008, 108, 1331-1418
    • (2008) Chem. Rev , vol.108 , pp. 1331-1418
    • Cho, M.H.1
  • 25
    • 33746049822 scopus 로고    scopus 로고
    • Performance of Various Density Functionals for the Hydrogen Bonds in DNA Base Pairs
    • van der Wijst, T.; Fonseca Guerra, C.; Swart, M.; Bickelhaupt, F. M. Performance of Various Density Functionals for the Hydrogen Bonds in DNA Base Pairs Chem. Phys. Lett. 2006, 426, 415-421
    • (2006) Chem. Phys. Lett , vol.426 , pp. 415-421
    • Van Der Wijst, T.1    Fonseca Guerra, C.2    Swart, M.3    Bickelhaupt, F.M.4
  • 26
    • 33750934763 scopus 로고    scopus 로고
    • Ultrafast Dynamics of Vibrational N-H Stretching Excitations in the 7-Azaindole Dimer
    • Dwyer, J. R.; Dreyer, J.; Nibbering, E. T. J.; Elsaesser, T. Ultrafast Dynamics of Vibrational N-H Stretching Excitations in the 7-Azaindole Dimer Chem. Phys. Lett. 2006, 432, 146-151
    • (2006) Chem. Phys. Lett , vol.432 , pp. 146-151
    • Dwyer, J.R.1    Dreyer, J.2    Nibbering, E.T.J.3    Elsaesser, T.4
  • 27
    • 34547668635 scopus 로고    scopus 로고
    • Unraveling the Structure of Hydrogen Bond Stretching Mode Infrared Absorption Bands: An Anharmonic Density Functional Theory Study on 7-Azaindole Dimers
    • Dreyer, J. Unraveling the Structure of Hydrogen Bond Stretching Mode Infrared Absorption Bands: An Anharmonic Density Functional Theory Study on 7-Azaindole Dimers J. Chem. Phys. 2007, 127, 054309
    • (2007) J. Chem. Phys , vol.127 , pp. 054309
    • Dreyer, J.1
  • 28
    • 0000860264 scopus 로고
    • Tert-Butyldimethylsilyl Group as a Protecting Group in Deoxynucleosides
    • Ogilvie, K. K. Tert-Butyldimethylsilyl Group as a Protecting Group in Deoxynucleosides Can. J. Chem. 1973, 51, 3799-3807
    • (1973) Can. J. Chem , vol.51 , pp. 3799-3807
    • Ogilvie, K.K.1
  • 31
    • 1242293698 scopus 로고    scopus 로고
    • Two-Dimensional Spectroscopy Using Diffractive Optics Based Phased-Locked Photon Echoes
    • Cowan, M. L.; Ogilvie, J. P.; Miller, R. J. D. Two-Dimensional Spectroscopy Using Diffractive Optics Based Phased-Locked Photon Echoes Chem. Phys. Lett. 2004, 386, 184-189
    • (2004) Chem. Phys. Lett , vol.386 , pp. 184-189
    • Cowan, M.L.1    Ogilvie, J.P.2    Miller, R.J.D.3
  • 32
    • 84864257994 scopus 로고    scopus 로고
    • N-H Stretching Modes of Adenosine Monomer in Solution Studied by Ultrafast Nonlinear Infrared Spectroscopy and Ab Initio Calculations
    • Greve, C.; Preketes, N. K.; Costard, R.; Koeppe, B.; Fidder, H.; Nibbering, E. T. J.; Temps, F.; Mukamel, S.; Elsaesser, T. N-H Stretching Modes of Adenosine Monomer in Solution Studied by Ultrafast Nonlinear Infrared Spectroscopy and Ab Initio Calculations J. Phys. Chem. A 2012, 116, 7636-7644
    • (2012) J. Phys. Chem. A , vol.116 , pp. 7636-7644
    • Greve, C.1    Preketes, N.K.2    Costard, R.3    Koeppe, B.4    Fidder, H.5    Nibbering, E.T.J.6    Temps, F.7    Mukamel, S.8    Elsaesser, T.9
  • 33
    • 43949132110 scopus 로고    scopus 로고
    • Calculation of Vibrational Transition Frequencies and Intensities in Water Dimer: Comparison of Different Vibrational Approaches
    • Kjaergaard, H. G.; Garden, A. L.; Chaban, G. M.; Gerber, R. B.; Matthews, D. A.; Stanton, J. F. Calculation of Vibrational Transition Frequencies and Intensities in Water Dimer: Comparison of Different Vibrational Approaches J. Phys. Chem. A 2008, 112, 4324-4335
    • (2008) J. Phys. Chem. A , vol.112 , pp. 4324-4335
    • Kjaergaard, H.G.1    Garden, A.L.2    Chaban, G.M.3    Gerber, R.B.4    Matthews, D.A.5    Stanton, J.F.6
  • 34
    • 0036201714 scopus 로고    scopus 로고
    • Pairing of the Nucleobase Guanine Studied by IR-UV Double-Resonance Spectroscopy and Ab Initio Calculations
    • Nir, E.; Janzen, C.; Imhof, P.; Kleinermanns, K.; de Vries, M. S. Pairing of the Nucleobase Guanine Studied by IR-UV Double-Resonance Spectroscopy and Ab Initio Calculations Phys. Chem. Chem. Phys. 2002, 4, 740-750
    • (2002) Phys. Chem. Chem. Phys , vol.4 , pp. 740-750
    • Nir, E.1    Janzen, C.2    Imhof, P.3    Kleinermanns, K.4    De Vries, M.S.5
  • 36
    • 0038784714 scopus 로고    scopus 로고
    • Coherent 2D IR Spectroscopy: Molecular Structure and Dynamics in Solution
    • Khalil, M.; Demirdoven, N.; Tokmakoff, A. Coherent 2D IR Spectroscopy: Molecular Structure and Dynamics in Solution J. Phys. Chem. A 2003, 107, 5258-5279
    • (2003) J. Phys. Chem. A , vol.107 , pp. 5258-5279
    • Khalil, M.1    Demirdoven, N.2    Tokmakoff, A.3
  • 38
    • 2942674694 scopus 로고    scopus 로고
    • Femtosecond Infrared Coherent Excitation of Liquid Phase Vibrational Population Distributions (v > 5)
    • Witte, T.; Yeston, J. S.; Motzkus, M.; Heilweil, E. J.; Kompa, K. L. Femtosecond Infrared Coherent Excitation of Liquid Phase Vibrational Population Distributions (v > 5) Chem. Phys. Lett. 2004, 392, 156-161
    • (2004) Chem. Phys. Lett , vol.392 , pp. 156-161
    • Witte, T.1    Yeston, J.S.2    Motzkus, M.3    Heilweil, E.J.4    Kompa, K.L.5
  • 39
    • 4944233292 scopus 로고    scopus 로고
    • Strong Enhancement of Vibrational Relaxation by Watson-Crick Base Pairing
    • Woutersen, S.; Cristalli, G. Strong Enhancement of Vibrational Relaxation by Watson-Crick Base Pairing J. Chem. Phys. 2004, 121, 5381-5386
    • (2004) J. Chem. Phys , vol.121 , pp. 5381-5386
    • Woutersen, S.1    Cristalli, G.2
  • 40
    • 0041903788 scopus 로고    scopus 로고
    • Molecular Dynamics Simulation Study of N-Methylacetamide in Water. II. Two-Dimensional Infrared Pump-Probe Spectra
    • Kwac, K.; Cho, M. H. Molecular Dynamics Simulation Study of N-Methylacetamide in Water. II. Two-Dimensional Infrared Pump-Probe Spectra J. Chem. Phys. 2003, 119, 2256-2263
    • (2003) J. Chem. Phys , vol.119 , pp. 2256-2263
    • Kwac, K.1    Cho, M.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.