Fourier transform infrared spectroscopy of 2′-deoxycytidine aggregates in CDCl3 solutions

Journal of Chemical Physics

Volumn 134, Issue 11, 2011, Pages

  Biemann, Lars ^a   Hber, Thomas ^a   Maydt, Daniela ^a   Schaper, Klaus ^a   Kleinermanns, Karl ^a  

^a HEINRICH HEINE UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AB INITIO CALCULATIONS; CONDUCTOR LIKE SCREENING MODELS; CYTIDINE; DECONVOLUTION METHOD; EXTINCTION COEFFICIENTS; FOURIER TRANSFORM INFRARED; HYDROGEN-BONDING PATTERNS; IR SPECTRUM; SELF AGGREGATION; SOLVENT EFFECTS; SUPER-STRUCTURES; TERT-BUTYLDIMETHYLSILYL;

CALCULATIONS; FOURIER TRANSFORM INFRARED SPECTROSCOPY; HYDROGEN BONDS;

DIMERS;

CHLOROFORM; DEOXYCYTIDINE; DNA;

ALGORITHM; ARTICLE; CHEMICAL MODEL; CHEMISTRY; DIMERIZATION; HYDROGEN BOND; INFRARED SPECTROSCOPY; METHODOLOGY; SOLUTION AND SOLUBILITY;

ALGORITHMS; CHLOROFORM; DEOXYCYTIDINE; DIMERIZATION; DNA; HYDROGEN BONDING; MODELS, CHEMICAL; SOLUTIONS; SPECTROSCOPY, FOURIER TRANSFORM INFRARED;

EID: 79953171903     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3557821     Document Type: Article

References (47)

1. J. D. Watson and F. H. C. Crick, Nature (london) 171, 964, (1953). 10.1038/171964b0
2. K. Gehring, J.-L. Leroy, and M. Gueron, Lett. Nature 363, 561 (1993). 10.1038/363561a0 (Pubitemid 23186646)
3. P. Carmona, M. Molina, A. Lasagabaster, and R. Escobar, Biospectroscopy 1, 235 (1995). 10.1002/bspy.350010402
4. M. Duca, P. Vekhoff, K. Oussedik, L. Halby, and P. B. Arimondo, Nucleic Acids Res. 36, 5123 (2008). 10.1093/nar/gkn493
5. J. T. Davis, Angew. Chem. 43, 668 (2004). 10.1002/anie.200300589 (Pubitemid 38197045)
6. J. L. Sessler, C. M. Lawrence, and J. Jayawickramarajah, Chem. Soc. Rev. 36, 314 (2007). 10.1039/b604119c
7. E. Nir, I. Hnig, K. Kleinermanns, and M. S. de Vries, Phys. Chem. Chem. Phys. 5, 4780 (2003). 10.1039/b310396j
8. M. Dey, F. Moritz, J. Grotemeyer, and E. W. Schlag, J. Am. Chem. Soc. 116, 9211 (1994). 10.1021/ja00099a042
9. E. Nir, Ch. Pltzer, K. Kleinermanns, and M. de Vries, Eur. Phys. J. D 20, 317 (2002). 10.1140/epjd/e2002-00167-2 (Pubitemid 36185330)
10. M. Tsuboi, Y. Kyogoku, and T. Shimanouchi, Biochim. Biophys. Acta 55, 1 (1962). 10.1016/0006-3002(62)90925-3
11. A. A. Maevsky and B. I. Sukhorukov, Nucleic Acids Res. 8, 3029 (1980). 10.1093/nar/8.13.3029
12. K. Kulinska, J. Sarzynska, and M. Wiewiorowski, Vib. Spectrosc. 1, 277 (1991). 10.1016/0924-2031(91)85005-8
13. W. Krzyzosiak, M. Jaskolski, H. Sierzputowska-Gracz, and M. Wiewiorowski, Nucleic Acids Res. 10, 2741 (1982). 10.1093/nar/10.8.2741
14. M. Mathouthi, A. M. Seuvre, and J. L. Koenig, Carbohydr. Res. 146, 1 (1986). 10.1016/0008-6215(86)85019-4
15. N. Leulliot, M. Ghomi, H. Jobic, O. Bouloussa, V. Baumruk, and C. Coulombeau, J. Phys. Chem. B 103, 10934 (1999). 10.1021/jp9921147
16. S. A. Lee, J. Li, A. Anderson, W. Smith, R. H. Griffey, and V. Mohan, J. Raman Spectrosc. 32, 795 (2001). 10.1002/jrs.749 (Pubitemid 32911912)
17. J. Li, S. A. Lee, A. Anderson, L. Lettress, R. H. Griffey, and V. Mohan, J. Raman Spectrosc. 34, 183 (2003). 10.1002/jrs.973
18. M. Rozenberg, C. Jung, and G. Shoham, Phys. Chem. Chem. Phys. 5, 1533 (2003). 10.1039/b300210c
19. M. Rozenberg, C. Jung, and G. Shoham, Spectrochim. Acta Part A 60, 2369 (2004). 10.1016/j.saa.2003.12.013
20. P. K. Sahu, R. K. Mishra, and S.-L. Lee, J. Phys. Chem. A 109, 2887 (2005). 10.1021/jp0459965 (Pubitemid 40519538)
21. D. W. Young and H. R. Wilson, Acta Crystallogr., Sect. B: Struct. Crystallogr. Cryst. Chem. B31 (4), 961 (1975). 10.1107/S0567740875004281
22. Y. Kyogoku, R. C. Lord, and A. Rich, Science 154, 518 (1966).
23. M. Eigen, Naturwiss. 58, 465 (1971). 10.1007/BF00623322
24. P. Carmona, M. Molina, and A. Lasagabaster, J. Phys. Chem. 97, 9519 (1993). 10.1021/j100139a042
25. N. K. Schwalb, T. Michalak, and F. Temps, J. Phys. Chem. B 113, 16365 (2009). 10.1021/jp904883n
26. N. K. Schwalb and F. Temps, J. Photochem. Photobiol. A 208, 164 (2009). 10.1016/j.jphotochem.2009.09.011
27. D. Maydt, K. Schaper, L. Biemann, T. Hber, and K. Kleinermanns, J. Chem. Phys. 128, 195103 (2008). 10.1063/1.2912064 (Pubitemid 351734008)
28. L. Biemann, T. Hber, and K. Kleinermanns, J. Chem. Phys. 130, 125102 (2009). 10.1063/1.3098352
29. K. K. Ogilvie, Can. J. Chem. 51, 3799 (1973). 10.1139/v73-569
30. R. Ahlrichs, M. Br, M. Hser, H. Horn, and C. Klmel, Chem. Phys. Lett. 162, 165 (1989). 10.1016/0009-2614(89)85118-8
31. C. Huber, R. Ahlrichs, and A. Schfer, J. Chem. Phys. 100, 5829 (1994). 10.1063/1.466841
32. O. Treutler and R. Ahlrichs, J. Chem. Phys. 102 (1), 346 (1995). 10.1063/1.469408
33. M. von Arnim and R. Ahlrichs, J. Comput. Chem. 19 (15), 1746 (1998). 10.1002/(SICI)1096-987X(19981130)19:151746::AID-JCC73.0.CO;2-N
34. H. Oehm, M. Hser, K. Eichkorn, O. Treutler, and R. Ahlrichs, Chem. Phys. Lett. 240, 283 (1995). 10.1016/0009-2614(95)00621-A
35. H. Oehm, M. Hser, K. Eichkorn, O. Treutler, and R. Ahlrichs, Chem. Phys. Lett. 242, 652 (1995). 10.1016/0009-2614(95)00838-U
36. O. Treutler, K. Eichkorn, F. Weigend, and R. Ahlrichs, Theo. Chem. Acc. 97, 119 (1997). 10.1007/s002140050244 (Pubitemid 127136391)
37. A. Klamt and G. Schrmann, J. Chem. Soc. Perkin Trans. 2, 799 (1993). 10.1039/p29930000799
38. D. R. Lide, editor, Handbook of Chemistry and Physics, edited by, D. R. Lide, 78th ed. (CRC, Boca Raton, FL, 1997).
39. A. Klamt, J. Phys. Chem. 100, 3349 (1996). 10.1021/jp950607f
40. G. M. Nagel and S. Hanlon, Biochemistry 11 (5), 816 (1972). 10.1021/bi00755a021
41. I. M. Klotz and J. S. Franzen, J. Am. Chem. Soc. 84, 3461 (1962). 10.1021/ja00877a009
42. 13C-NMR spectrum, and the IR-spectrum; for a table of calculated vibrational frequencies and intensities.
43. S. T. Shipman, P. C. Douglas, H. S. Yoo, C. E. Hinkle, E. L. Mierzejewski, and B. H. Pate, Phys. Chem. Chem. Phys. 9, 4572 (2007). 10.1039/b704900e
44. C. Emmeluth, M. A. Suhm, and D. Luckhaus, J. Phys. Chem. 118, 2242 (2003). 10.1063/1.1532339
45. J. Dreyer, J. Phys. Chem. 122, 184306 (2005). 10.1063/1.1891727 (Pubitemid 40682806)
46. P. Blaise, M. J. Wojcik, and O. Henri-Rousseau, J. Phys. Chem. 122, 064306 (2005). 10.1063/1.1847491 (Pubitemid 41042260)
47. G. M. Florio, T. S. Zwier, E. M. Myshakin, K. D. Jordan, and E. L. Sibert III, J. Phys. Chem. 118, 1735 (2003). 10.1063/1.1530573