Polymerase chain reaction assay for rapid, sensitive detection, and identification of Colletotrichum gloeosporioides causing greater yam anthracnose

Molecular Biotechnology

Volumn 52, Issue 3, 2012, Pages 277-284

  Raj, Mithun ^a   Jeeva, M L ^a   Hegde, V ^a   Vidyadharan, Pravi ^a   Archana, P V ^a   Senthil Alias Sankar, M ^a   Vishnu Nath, S ^a  

^a CENTRAL TUBER CROPS RESEARCH INSTITUTE   (India)

Author keywords

Die back; Dioscorea alata; Glomerella cingulata; Molecular diagnosis; Nested PCR; Phytopathogen; RDNA

Indexed keywords

DIOSCOREA ALATA; GLOMERELLA; MOLECULAR DIAGNOSIS; NESTED PCR; PHYTOPATHOGENS; RDNA;

DIAGNOSIS; FUNGI; MOLECULAR BIOLOGY; PATHOGENS;

POLYMERASE CHAIN REACTION;

PLANT DNA;

ANTHRACNOSE; ARTICLE; CONTROLLED STUDY; DIAGNOSTIC ACCURACY; FUNGUS IDENTIFICATION; GLOMERELLA CINGULATA; NONHUMAN; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SOIL ANALYSIS; SPECIES DIFFERENCE;

COLLETOTRICHUM; DIOSCOREA; DNA PRIMERS; DNA, FUNGAL; PLANT DISEASES; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPECIES SPECIFICITY; SPORES, FUNGAL;

DIOSCOREA ALATA; GLOMERELLA CINGULATA;

EID: 84873414314     PISSN: 10736085     EISSN: 15590305     Source Type: Journal    
DOI: 10.1007/s12033-012-9496-9     Document Type: Article

References (31)

1. Hahn, S. K., Osiru, D. S. O., Akoroda, M. O., & Otoo, J. A. (1987). Yam production its future prospects. Outlook on Agriculture, 16(3), 105-110.
2. Ayodele, M.A., Hughes, J. d'A. & Asiedu, R. (2000). Yam anthracnose disease: Field symptoms and laboratory diagnostics. International Institute of Tropical Agriculture.
3. Bailey, J. A., & Jeger, M. J. (1992). Colletotrichum: Biology, pathology and control (p. 388). Wallingford: CAB International.
4. Guarro, J., Svidzinski, T. E., Zaror, L., Forjaz, M. H., Gene, J., & Fischman, O. (1998). Subcutaneous hyalohyphomycosis caused by Colletotrichum gloeosporioides. Journal of Clinical Microbiology, 36, 3060-3065.
5. Sweetmore, A., Simons, S. A., & Kenward, M. (1994). Comparison of disease progress curves for yam anthracnose (C. gloeosporioides). Plant Pathology, 43, 206-215.
6. Jackson, G.V.H., Newhook, F.J. & Winch, J. (2002). Pest advisory leaflet. New Caledonia: Plant Protection Service No. 12, Secretariat of the Pacific Community.
7. Smith, B. J., & Black, L. L. (1990). Morphological, cultural and pathogenic variation among Colletotrichum species isolated from strawberry. Plant Disease, 74, 69-76.
8. Choe, J. P., Hwang, U. W., & Kim, W. (1999). Putative secondary structures of unusually long 226 strepsipteran SSU rRNAs and its phylogenetics implications. Molecular Cells, 9, 191-199.
9. McCartney, H. A., Foster, S. J., Fraaije, B. A., & Ward, E. (2003). Molecular diagnostics for fungal plant pathogens. Pest Management Science, 59, 129-142.
10. Semagn, K. (2006). An overview of molecular methods for plants. African Journal of Biotechnology, 5(25), 2540-2568.
11. Wallenhammar, A., & Arwidsson, O. (2001). Detection of Plasmodiophora brassicae by PCR in naturally infested soils. European Journal of Plant Pathology, 107, 313-321.
12. Grote, D., Olmos, A., Kofoet, A., Tuser, J. J., Bertolini, E., & Cambra, M. (2002). Specific and sensitive detection of Phytophthora nicotianae by simple and nested-PCR. European Journal of Plant Pathology, 108, 197-207.
13. Azim, T., Jeeva, M. L., Pravi, V., Archana, P. V., & Mishra, A. K. (2010). Exploration of smaller subunit ribosomal DNA for detection of Colletotrichum gloeosporioides causing anthracnose in Dioscorea alata L. Journal of Root Crops, 36(1), 83-87.
14. Mills, P. R., Sreenivasaprasad, S., & Brown, A. E. (1992). Detection and differentiation of Colletotrichum gloeosporioides isolates using PCR. FEMS Microbiology Letters, 98(1-3), 137-143.
15. Jeeva, M. L., Sharma, K., Mishra, A. K., & Misra, R. S. (2008). Rapid extraction of genomic DNA from Sclerotium rolfsii causing collar rot of Amorphophallus. Genes, Genomes and Genomics, 2(1), 60-62.
16. White, T. J., Bruns, T., Lee, S., & Taylor, J. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In M. Innis, D. Gelfand, J. Sninsky, & T. White (Eds.), PCR Protocols: a Guide to Methods and Applications (pp. 315-322). Orlando, Florida: Academic Press.
17. Hall, T. A. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
18. Sharma, K., Mishra, A. K., & Misra, R. S. (2008). A simple and efficient method for extraction of genomic DNA from tropical tuber crops. African Journal of Biotechnology, 7(8), 1018-1022.
19. Ward, E., Foster, S. J., Fraaije, B. A., & McCartney, H. A. (2004). Plant pathogen diagnostics: Immunological and nucleic acid-based approaches. Annuals of Applied Biology, 145, 1-16.
20. Schubert, R., Bahnweg, G., & Nechwatal, J. (1999). Detection and quantification of Phytophthora species which are associated with root to rot diseases in European deciduous forests by species to specific polymerase chain reaction. European Journal for Pathology, 29, 169-188.
21. Cooke, D. E. L., Drenth, A., Duncan, J. M., Wagels, G., & Brasier, C. M. (2000). A molecular phylogeny of Phytophthora and related oomycetes. Fungal Genetics and Biology, 30, 17-32.
22. Lee, S. B., & Taylor, J. W. (1992). Phylogeny of five fungus-like protoctista Phytophthora species, inferred from the internal transcribed spacers of ribosomal DNA. Journal of Molecular Biology and Evolution, 9, 636-653.
23. Martin, F. N. (1990). Variation in the ribosomal DNA repeat unit within single oospore isolates of the genus Pythium. Genome, 33, 585-591.
24. Torres-Calzada, C., Tapia-Tussell, R., Quijano-Ramayo, A., Martin-Mex, R., Rojas-Herrera, R., Higuera-Ciapara, I. (2011). A species-specific polymerase chain reaction assay for rapid and sensitive detection of Colletotrichum capsici. Molecular Biotechnology, 49(1), 48-55.
25. Chen, L. S., Chu, C., Liu, C. D., Chen, R. S., & Tsay, J. G. (2006). PCR-based detection and differentiation of anthracnose pathogens, Colletotrichum gloeosporioides and C. truncatum, from vegetable soybean in Taiwan. Journal of Phytopathology, 154, 654-662.
26. Wang, W., Tang, J. H., & Wang, Y. C. (2008). Molecular detection of Colletotrichum lindemuthianum by duplex PCR. Journal of Phytopathology, 156, 431-437.
27. Sreenivasaprasad, S., Sharada, K., Brown, A. E., & Mills, P. R. (1996). PCR-based detection of C. acutatum on strawberry. Plant Pathology, 45, 650-655.
28. Cullen, D. W., Lees, A. K., Toth, I. K., & Duncan, J. M. (2002). Detection of Colletotrichum coccodes from soil and potato tubers by conventional and quantitative real-time PCR. Plant Pathology, 51, 281-292.
29. Ippolito, A., Schena, L., Nigro, F., Ligorio, V. S., & Yaseen, T. (2004). Real-time detection of Phytophthora nicotianae and P. citrophthora in citrus roots and soil. European Journal of Plant Pathology, 110, 833-843.
30. Jeeva, M. L., Mishra, A. K., Pravi, V., Misra, R. S., & Hegde, V. (2010). A species-specific polymerase chain reaction assay for rapid and sensitive detection of Sclerotium rolfsii. Australasian Plant Pathology, 39, 1-7.
31. Mishra, A. K., Jeeva, M. L., Pravi, V., Misra, R. S., & Hegde, V. (2010). Rapid and sensitive detection of Phytophthora colocasiae associated with leaf blight of taro by species-specific polymerase chain reaction assay. Annals of Microbiology, 60, 209-215.