메뉴 건너뛰기




Volumn 21, Issue 2, 2013, Pages 266-276

Structure of the essential diversity-generating retroelement protein bAvd and its functionally important interaction with reverse transcriptase

Author keywords

[No Author keywords available]

Indexed keywords

DNA; PROTEIN; RETROELEMENT PROTEIN BAVD; RNA; RNA DIRECTED DNA POLYMERASE; UNCLASSIFIED DRUG;

EID: 84873404169     PISSN: 09692126     EISSN: 18784186     Source Type: Journal    
DOI: 10.1016/j.str.2012.11.016     Document Type: Article
Times cited : (24)

References (30)
  • 2
    • 23444440610 scopus 로고    scopus 로고
    • Conferring substrate specificity to DNA helicases: Role of the RecQ HRDC domain
    • D.A. Bernstein, and J.L. Keck Conferring substrate specificity to DNA helicases: role of the RecQ HRDC domain Structure 13 2005 1173 1182
    • (2005) Structure , vol.13 , pp. 1173-1182
    • Bernstein, D.A.1    Keck, J.L.2
  • 4
    • 0031045585 scopus 로고    scopus 로고
    • Preparation of selenomethionyl proteins for phase determination
    • S. Doublié Preparation of selenomethionyl proteins for phase determination Methods Enzymol. 276 1997 523 530
    • (1997) Methods Enzymol. , vol.276 , pp. 523-530
    • Doublié, S.1
  • 7
    • 52049112607 scopus 로고    scopus 로고
    • Diversity-generating retroelement homing regenerates target sequences for repeated rounds of codon rewriting and protein diversification
    • H. Guo, L.V. Tse, R. Barbalat, S. Sivaamnuaiphorn, M. Xu, S. Doulatov, and J.F. Miller Diversity-generating retroelement homing regenerates target sequences for repeated rounds of codon rewriting and protein diversification Mol. Cell 31 2008 813 823
    • (2008) Mol. Cell , vol.31 , pp. 813-823
    • Guo, H.1    Tse, L.V.2    Barbalat, R.3    Sivaamnuaiphorn, S.4    Xu, M.5    Doulatov, S.6    Miller, J.F.7
  • 9
    • 0029351694 scopus 로고
    • Protein Motifs. 7. The four-helix bundle: What determines a fold?
    • S. Kamtekar, and M.H. Hecht Protein Motifs. 7. The four-helix bundle: what determines a fold? FASEB J. 9 1995 1013 1022
    • (1995) FASEB J. , vol.9 , pp. 1013-1022
    • Kamtekar, S.1    Hecht, M.H.2
  • 10
    • 79958732532 scopus 로고    scopus 로고
    • Nonspecific DNA binding and bending by HUαβ: Interfaces of the three binding modes characterized by salt-dependent thermodynamics
    • J. Koh, I. Shkel, R.M. Saecker, and M.T. Record Jr. Nonspecific DNA binding and bending by HUαβ: interfaces of the three binding modes characterized by salt-dependent thermodynamics J. Mol. Biol. 410 2011 241 267
    • (2011) J. Mol. Biol. , vol.410 , pp. 241-267
    • Koh, J.1    Shkel, I.2    Saecker, R.M.3    Record, Jr.M.T.4
  • 11
    • 0026717535 scopus 로고
    • Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: A sliding DNA clamp
    • X.P. Kong, R. Onrust, M. O'Donnell, and J. Kuriyan Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp Cell 69 1992 425 437
    • (1992) Cell , vol.69 , pp. 425-437
    • Kong, X.P.1    Onrust, R.2    O'Donnell, M.3    Kuriyan, J.4
  • 12
    • 0028618183 scopus 로고
    • Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA
    • T.S. Krishna, X.P. Kong, S. Gary, P.M. Burgers, and J. Kuriyan Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA Cell 79 1994 1233 1243
    • (1994) Cell , vol.79 , pp. 1233-1243
    • Krishna, T.S.1    Kong, X.P.2    Gary, S.3    Burgers, P.M.4    Kuriyan, J.5
  • 13
    • 80052302569 scopus 로고    scopus 로고
    • Conservation of the C-type lectin fold for massive sequence variation in a Treponema diversity-generating retroelement
    • J. Le Coq, and P. Ghosh Conservation of the C-type lectin fold for massive sequence variation in a Treponema diversity-generating retroelement Proc. Natl. Acad. Sci. USA 108 2011 14649 14653
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 14649-14653
    • Le Coq, J.1    Ghosh, P.2
  • 14
    • 33750172781 scopus 로고    scopus 로고
    • Crystal structure of the conserved hypothetical cytosolic protein Xcc0516 from Xanthomonas campestris reveals a novel quaternary structure assembled by five four-helix bundles
    • L.Y. Lin, C.L. Ching, K.H. Chin, S.H. Chou, and N.L. Chan Crystal structure of the conserved hypothetical cytosolic protein Xcc0516 from Xanthomonas campestris reveals a novel quaternary structure assembled by five four-helix bundles Proteins 65 2006 783 786
    • (2006) Proteins , vol.65 , pp. 783-786
    • Lin, L.Y.1    Ching, C.L.2    Chin, K.H.3    Chou, S.H.4    Chan, N.L.5
  • 16
  • 18
    • 45849126155 scopus 로고    scopus 로고
    • Selective ligand recognition by a diversity-generating retroelement variable protein
    • J.L. Miller, J. Le Coq, A. Hodes, R. Barbalat, J.F. Miller, and P. Ghosh Selective ligand recognition by a diversity-generating retroelement variable protein PLoS Biol. 6 2008 e131
    • (2008) PLoS Biol. , vol.6 , pp. 131
    • Miller, J.L.1    Le Coq, J.2    Hodes, A.3    Barbalat, R.4    Miller, J.F.5    Ghosh, P.6
  • 19
    • 0023651444 scopus 로고
    • Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates
    • J.F. Milligan, D.R. Groebe, G.W. Witherell, and O.C. Uhlenbeck Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates Nucleic Acids Res. 15 1987 8783 8798
    • (1987) Nucleic Acids Res. , vol.15 , pp. 8783-8798
    • Milligan, J.F.1    Groebe, D.R.2    Witherell, G.W.3    Uhlenbeck, O.C.4
  • 20
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray Diffraction Data Collected in Oscillation Mode
    • Z.O.W. Minor Processing of X-ray Diffraction Data Collected in Oscillation Mode Methods in Enzymology 276 1997 307 326
    • (1997) Methods in Enzymology , vol.276 , pp. 307-326
    • Minor, Z.O.W.1
  • 22
    • 0027216519 scopus 로고
    • The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures
    • T.T. Paull, M.J. Haykinson, and R.C. Johnson The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures Genes Dev. 7 1993 1521 1534
    • (1993) Genes Dev. , vol.7 , pp. 1521-1534
    • Paull, T.T.1    Haykinson, M.J.2    Johnson, R.C.3
  • 23
    • 0034801526 scopus 로고    scopus 로고
    • Intervening sequences in rrl genes and fragmentation of 23S rRNA in genera of the family Enterobacteriaceae
    • L.M. Pronk, and K.E. Sanderson Intervening sequences in rrl genes and fragmentation of 23S rRNA in genera of the family Enterobacteriaceae J. Bacteriol. 183 2001 5782 5787
    • (2001) J. Bacteriol. , vol.183 , pp. 5782-5787
    • Pronk, L.M.1    Sanderson, K.E.2
  • 24
    • 0027313448 scopus 로고
    • Intervening sequence with conserved open reading frame in eubacterial 23S rRNA genes
    • D. Ralph, and M. McClelland Intervening sequence with conserved open reading frame in eubacterial 23S rRNA genes Proc. Natl. Acad. Sci. USA 90 1993 6864 6868
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 6864-6868
    • Ralph, D.1    McClelland, M.2
  • 25
    • 84865344296 scopus 로고    scopus 로고
    • Analysis of a comprehensive dataset of diversity generating retroelements generated by the program DiGReF
    • T. Schillinger, M. Lisfi, J. Chi, J. Cullum, and N. Zingler Analysis of a comprehensive dataset of diversity generating retroelements generated by the program DiGReF BMC Genomics 13 2012 430
    • (2012) BMC Genomics , vol.13 , pp. 430
    • Schillinger, T.1    Lisfi, M.2    Chi, J.3    Cullum, J.4    Zingler, N.5
  • 26
    • 0014862345 scopus 로고
    • A simple chemically defined medium for the production of phase i Bordetella pertussis
    • D.W. Stainer, and M.J. Scholte A simple chemically defined medium for the production of phase I Bordetella pertussis J. Gen. Microbiol. 63 1970 211 220
    • (1970) J. Gen. Microbiol. , vol.63 , pp. 211-220
    • Stainer, D.W.1    Scholte, M.J.2
  • 28
    • 0037237545 scopus 로고    scopus 로고
    • Automated main-chain model building by template matching and iterative fragment extension
    • T.C. Terwilliger Automated main-chain model building by template matching and iterative fragment extension Acta Crystallogr. D Biol. Crystallogr. 59 2003 38 44
    • (2003) Acta Crystallogr. D Biol. Crystallogr. , vol.59 , pp. 38-44
    • Terwilliger, T.C.1
  • 30
    • 0029162089 scopus 로고
    • Group II intron mobility occurs by target DNA-primed reverse transcription
    • S. Zimmerly, H. Guo, P.S. Perlman, and A.M. Lambowitz Group II intron mobility occurs by target DNA-primed reverse transcription Cell 82 1995 545 554
    • (1995) Cell , vol.82 , pp. 545-554
    • Zimmerly, S.1    Guo, H.2    Perlman, P.S.3    Lambowitz, A.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.