-
1
-
-
4644280174
-
Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements
-
Doulatov S, Hodes A, Dai L, Mandhana N, Liu M, et al. (2004) Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements. Nature 431: 476-481.
-
(2004)
Nature
, vol.431
, pp. 476-481
-
-
Doulatov, S.1
Hodes, A.2
Dai, L.3
Mandhana, N.4
Liu, M.5
-
3
-
-
0037085991
-
Reverse transcriptase-mediated tropism switching in Bordetella bacteriophage
-
Liu M, Deora R, Doulatov SR, Gingery M, Eiserling FA, et al. (2002) Reverse transcriptase-mediated tropism switching in Bordetella bacteriophage. Science 295: 2091-2094.
-
(2002)
Science
, vol.295
, pp. 2091-2094
-
-
Liu, M.1
Deora, R.2
Doulatov, S.R.3
Gingery, M.4
Eiserling, F.A.5
-
4
-
-
52049112607
-
Diversity-generating retroelement homing regenerates target sequences for repeated rounds of codon rewriting and protein diversification
-
Guo H, Tse LV, Barbalat R, Sivaamnuaiphorn S, Xu M, et al. (2008) Diversity-generating retroelement homing regenerates target sequences for repeated rounds of codon rewriting and protein diversification. Mol Cell 31: 813-823.
-
(2008)
Mol Cell
, vol.31
, pp. 813-823
-
-
Guo, H.1
Tse, L.V.2
Barbalat, R.3
Sivaamnuaiphorn, S.4
Xu, M.5
-
5
-
-
0029162089
-
Group II intron mobility occurs by target DNA-primed reverse transcription
-
Zimmerly S, Guo H, Perlman PS, Lambowitz AM, (1995) Group II intron mobility occurs by target DNA-primed reverse transcription. Cell 82: 545-554.
-
(1995)
Cell
, vol.82
, pp. 545-554
-
-
Zimmerly, S.1
Guo, H.2
Perlman, P.S.3
Lambowitz, A.M.4
-
6
-
-
0027450385
-
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition
-
Luan DD, Korman MH, Jakubczak JL, Eickbush TH, (1993) Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72: 595-605.
-
(1993)
Cell
, vol.72
, pp. 595-605
-
-
Luan, D.D.1
Korman, M.H.2
Jakubczak, J.L.3
Eickbush, T.H.4
-
7
-
-
0036847319
-
Human L1 element target-primed reverse transcription in vitro
-
Cost GJ, Feng Q, Jacquier A, Boeke JD, (2002) Human L1 element target-primed reverse transcription in vitro. EMBO J 21: 5899-5910.
-
(2002)
EMBO J
, vol.21
, pp. 5899-5910
-
-
Cost, G.J.1
Feng, Q.2
Jacquier, A.3
Boeke, J.D.4
-
8
-
-
27144524301
-
The C-type lectin fold as an evolutionary solution for massive sequence variation
-
McMahon SA, Miller JL, Lawton JA, Kerkow DE, Hodes A, et al. (2005) The C-type lectin fold as an evolutionary solution for massive sequence variation. Nat Struct Mol Biol 12: 886-892.
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 886-892
-
-
McMahon, S.A.1
Miller, J.L.2
Lawton, J.A.3
Kerkow, D.E.4
Hodes, A.5
-
9
-
-
45849126155
-
Selective ligand recognition by a diversity-generating retroelement variable protein
-
doi: 10.1371/journal.pbio.0060131
-
Miller JL, Le Coq J, Hodes A, Barbalat R, Miller JF, et al. (2008) Selective ligand recognition by a diversity-generating retroelement variable protein. PLoS Biol 6: e131 doi:10.1371/journal.pbio.0060131.
-
(2008)
PLoS Biol
, vol.6
-
-
Miller, J.L.1
Le Coq, J.2
Hodes, A.3
Barbalat, R.4
Miller, J.F.5
-
10
-
-
0030992160
-
Supercoil-induced extrusion of a regulatory DNA hairpin
-
Dai X, Greizerstein MB, Nadas-Chinni K, Rothman-Denes LB, (1997) Supercoil-induced extrusion of a regulatory DNA hairpin. Proc Natl Acad Sci U S A 94: 2174-2179.
-
(1997)
Proc Natl Acad Sci U S A
, vol.94
, pp. 2174-2179
-
-
Dai, X.1
Greizerstein, M.B.2
Nadas-Chinni, K.3
Rothman-Denes, L.B.4
-
11
-
-
0029844179
-
Single-stranded DNA-binding proteins as transcriptional activators
-
Miller A, Dai X, Choi M, Glucksmann-Kuis MA, Rothman-Denes LB, (1996) Single-stranded DNA-binding proteins as transcriptional activators. Methods Enzymol 274: 9-20.
-
(1996)
Methods Enzymol
, vol.274
, pp. 9-20
-
-
Miller, A.1
Dai, X.2
Choi, M.3
Glucksmann-Kuis, M.A.4
Rothman-Denes, L.B.5
-
12
-
-
0025850530
-
Resolution of branched DNA substrates by T7 endonuclease I and its inhibition
-
Lu M, Guo Q, Studier FW, Kallenbach NR, (1991) Resolution of branched DNA substrates by T7 endonuclease I and its inhibition. J Biol Chem 266: 2531-2536.
-
(1991)
J Biol Chem
, vol.266
, pp. 2531-2536
-
-
Lu, M.1
Guo, Q.2
Studier, F.W.3
Kallenbach, N.R.4
-
13
-
-
0031023127
-
Increase in negative supercoiling of plasmid DNA in Escherichia coli exposed to cold shock
-
Mizushima T, Kataoka K, Ogata Y, Inoue R, Sekimizu K, (1997) Increase in negative supercoiling of plasmid DNA in Escherichia coli exposed to cold shock. Mol Microbiol 23: 381-386.
-
(1997)
Mol Microbiol
, vol.23
, pp. 381-386
-
-
Mizushima, T.1
Kataoka, K.2
Ogata, Y.3
Inoue, R.4
Sekimizu, K.5
-
14
-
-
77952301118
-
DNA supercoiling and its role in DNA decatenation and unknotting
-
Witz G, Stasiak A, (2010) DNA supercoiling and its role in DNA decatenation and unknotting. Nucleic Acids Res 38: 2119-2133.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 2119-2133
-
-
Witz, G.1
Stasiak, A.2
-
15
-
-
0028805074
-
Purification, characterization, and investigation of the mechanism of aminoglycoside 3′-phosphotransferase type Ia
-
Siregar JJ, Miroshnikov K, Mobashery S, (1995) Purification, characterization, and investigation of the mechanism of aminoglycoside 3′-phosphotransferase type Ia. Biochemistry 34: 12681-12688.
-
(1995)
Biochemistry
, vol.34
, pp. 12681-12688
-
-
Siregar, J.J.1
Miroshnikov, K.2
Mobashery, S.3
-
16
-
-
10744224321
-
Genomic and genetic analysis of Bordetella bacteriophages encoding reverse transcriptase-mediated tropism-switching cassettes
-
Liu M, Gingery M, Doulatov SR, Liu Y, Hodes A, et al. (2004) Genomic and genetic analysis of Bordetella bacteriophages encoding reverse transcriptase-mediated tropism-switching cassettes. J Bacteriol 186: 1503-1517.
-
(2004)
J Bacteriol
, vol.186
, pp. 1503-1517
-
-
Liu, M.1
Gingery, M.2
Doulatov, S.R.3
Liu, Y.4
Hodes, A.5
-
17
-
-
0001660217
-
Influence of loop residues on the relative stabilities of DNA hairpin structures
-
Senior MM, Jones RA, Breslauer KJ, (1988) Influence of loop residues on the relative stabilities of DNA hairpin structures. Proc Natl Acad Sci U S A 85: 6242-6246.
-
(1988)
Proc Natl Acad Sci U S A
, vol.85
, pp. 6242-6246
-
-
Senior, M.M.1
Jones, R.A.2
Breslauer, K.J.3
-
18
-
-
0036493198
-
Compilation and analysis of group II intron insertions in bacterial genomes: evidence for retroelement behavior
-
Dai L, Zimmerly S, (2002) Compilation and analysis of group II intron insertions in bacterial genomes: evidence for retroelement behavior. Nucleic Acids Res 30: 1091-1102.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 1091-1102
-
-
Dai, L.1
Zimmerly, S.2
-
19
-
-
34249857983
-
Insertion of group II intron retroelements after intrinsic transcriptional terminators
-
Robart AR, Seo W, Zimmerly S, (2007) Insertion of group II intron retroelements after intrinsic transcriptional terminators. Proc Natl Acad Sci U S A 104: 6620-6625.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 6620-6625
-
-
Robart, A.R.1
Seo, W.2
Zimmerly, S.3
-
20
-
-
0035094207
-
Mutually exclusive distribution of IS1548 and GBSi1, an active group II intron identified in human isolates of group B streptococci
-
Granlund M, Michel F, Norgren M, (2001) Mutually exclusive distribution of IS1548 and GBSi1, an active group II intron identified in human isolates of group B streptococci. J Bacteriol 183: 2560-2569.
-
(2001)
J Bacteriol
, vol.183
, pp. 2560-2569
-
-
Granlund, M.1
Michel, F.2
Norgren, M.3
-
21
-
-
32344447374
-
Structure-specific DNA nucleases: structural basis for 3D-scissors
-
Nishino T, Ishino Y, Morikawa K, (2006) Structure-specific DNA nucleases: structural basis for 3D-scissors. Curr Opin Struc Biol 16: 60-67.
-
(2006)
Curr Opin Struc Biol
, vol.16
, pp. 60-67
-
-
Nishino, T.1
Ishino, Y.2
Morikawa, K.3
-
22
-
-
39149145112
-
New insight into the recognition of branched DNA structure by junction-resolving enzymes
-
Declais AC, Lilley DM, (2008) New insight into the recognition of branched DNA structure by junction-resolving enzymes. Curr Opin Struc Biol 18: 86-95.
-
(2008)
Curr Opin Struc Biol
, vol.18
, pp. 86-95
-
-
Declais, A.C.1
Lilley, D.M.2
-
23
-
-
0036886327
-
Retrotransposition of the Ll.LtrB group II intron proceeds predominantly via reverse splicing into DNA targets
-
Ichiyanagi K, Beauregard A, Lawrence S, Smith D, Cousineau B, et al. (2002) Retrotransposition of the Ll.LtrB group II intron proceeds predominantly via reverse splicing into DNA targets. Mol Microbiol 46: 1259-1272.
-
(2002)
Mol Microbiol
, vol.46
, pp. 1259-1272
-
-
Ichiyanagi, K.1
Beauregard, A.2
Lawrence, S.3
Smith, D.4
Cousineau, B.5
-
24
-
-
0042236980
-
Group II intron mobility using nascent strands at DNA replication forks to prime reverse transcription
-
Zhong J, Lambowitz AM, (2003) Group II intron mobility using nascent strands at DNA replication forks to prime reverse transcription. EMBO J 22: 4555-4565.
-
(2003)
EMBO J
, vol.22
, pp. 4555-4565
-
-
Zhong, J.1
Lambowitz, A.M.2
-
26
-
-
0014862345
-
A simple chemically defined medium for the production of phase I Bordetella pertussis
-
Stainer DW, Scholte MJ, (1970) A simple chemically defined medium for the production of phase I Bordetella pertussis. J Gen Microbiol 63: 211-220.
-
(1970)
J Gen Microbiol
, vol.63
, pp. 211-220
-
-
Stainer, D.W.1
Scholte, M.J.2
|