Conservation of the C-type lectin fold for massive sequence variation in a Treponema diversity-generating retroelement

Proceedings of the National Academy of Sciences of the United States of America

Volumn 108, Issue 35, 2011, Pages 14649-14653

  Le Coq, Johanne ^a,b   Ghosh, Partho ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b Centro Nacional de Investigations Oncológicas   (Spain)

Author keywords

Lipoprotein; Periodontal disease; X ray crystallography

Indexed keywords

LECTIN; LECTIN TYPE C; UNCLASSIFIED DRUG;

ARTICLE; CONSERVATION BIOLOGY; LIGAND BINDING; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FOLDING; PROTEIN STRUCTURE; RETROPOSON; SEQUENCE ANALYSIS; TREPONEMA DENTICOLA;

ADAPTIVE IMMUNITY; BACTERIAL PROTEINS; LECTINS, C-TYPE; PROTEIN FOLDING; RETROELEMENTS; TREPONEMA;

SPIROCHAETALES; TREPONEMA; TREPONEMA DENTICOLA; VERTEBRATA;

EID: 80052302569     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1105613108     Document Type: Article

References (29)

1. Davis M.M., Bjorkman P.J. (1988) T-cell antigen receptor genes and T-cell recognition. Nature 334:395-402.
2. Alder M.N., et al. (2005) Diversity and function of adaptive immune receptors in a jawless vertebrate. Science 310:1970-1973.
3. Pancer Z., Cooper M.D. (2006) The evolution of adaptive immunity. Annu Rev Immunol 24:497-518.
4. Liu M., et al. (2002) Reverse transcriptase-mediated tropism switching in Bordetella bacteriophage. Science 295:2091-2094.
5. McMahon S.A., et al. (2005) The C-type lectin fold as an evolutionary solution for massive sequence variation. Nat Struct Mol Biol 12:886-892.
6. Miller J.L., et al. (2008) Selective ligand recognition by a diversity-generating retroelement variable protein. PLoS Biol 6:e131.
7. Medhekar B., Miller J.F. (2007) Diversity-generating retroelements. Curr Opin Microbiol 10:388-395.
8. Doulatov S., et al. (2004) Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements. Nature 431:476-481.
9. Guo H., et al. (2008) Diversity-generating retroelement homing regenerates target sequences for repeated rounds of codon rewriting and protein diversification. Mol Cell 31:813-823.
10. Loesche W.J., Grossman N.S. (2001) Periodontal disease as a specific, albeit chronic, infection:Diagnosis and treatment. Clin Microbiol Rev 14:727-752.
11. Schulze R.J., Zückert W.R. (2006) Borrelia burgdorferi lipoproteins are secreted to the outer surface by default. Mol Microbiol 59:1473-1484.
12. Holm L., Rosenstrom P. (2010) Dali server: Conservation mapping in 3D. Nucleic Acids Res 38(web server issue):W545-W549.
13. Dierks T., et al. (2005) Molecular basis for multiple sulfatase deficiency and mechanism for formylglycine generation of the human formylglycine-generating enzyme. Cell 121:541-552.
14. Bojarová P., Williams S.J. (2008) Sulfotransferases, sulfatases and formylglycine-generating enzymes:A sulfation fascination. Curr Opin Chem Biol 12:573-581.
15. Murzin A.G., Brenner S.E., Hubbard T., Chothia C. (1995) SCOP:A structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 247: 536-540.
16. Roeser D., et al. (2006) A general binding mechanism for all human sulfatases by the formylglycine-generating enzyme. Proc Natl Acad Sci USA 103:81-86.
17. Tramontano A., Janda K.D., Lerner R.A. (1986) Catalytic antibodies. Science 234: 1566-1570.
18. Kuramitsu H.K., He X., Lux R., Anderson M.H., Shi W. (2007) Interspecies interactions within oral microbial communities. Microbiol Mol Biol Rev 71:653-670.
19. Kolenbrander P.E., et al. (2006) Bacterial interactions and successions during plaque development. Periodontol 2000 42:47-79.
20. Rickard A.H., Gilbert P., High N.J., Kolenbrander P.E., Handley P.S. (2003) Bacterial coaggregation:An integral process in the development of multi-species biofilms. Trends Microbiol 11:94-100.
21. Leslie A.G.W. (1992) Recent changes to the MOSFLM package for processing film and image plate data. Joint CCP4 + ESF-EAMCB Newsletter on Protein Crystallography, Vol 26.
22. Evans P. (2006) Scaling and assessment of data quality. Acta Crystallogr D Biol Crystallogr 62:72-82.
23. Adams P.D., et al. (2002) PHENIX:Building new software for automated crystallographic structure determination. Acta Crystallogr D Biol Crystallogr 58:1948-1954.
24. Emsley P., Cowtan K. (2004) Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60(Pt 12 Pt 1):2126-2132.
25. Murshudov G.N., Vagin A.A., Dodson E.J. (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D Biol Crystallogr 53:240-255.
26. McCoy A.J., et al. (2007) Phaser crystallographic software. J Appl Cryst 40:658-674.
27. Brunger A.T. (2007) Version 1.2 of the Crystallography and NMR system. Nat Protoc 2: 2728-2733.
28. Brünger A.T., et al. (1998) Crystallography & NMR system:A new software suite for macromolecular structure determination. Acta Crystallogr D Biol Crystallogr 54:905-921.
29. Schüttelkopf A.W., Van Aalten D.M. (2004) PRODRG:A tool for high-throughput crystallography of protein-ligand complexes. Acta Crystallogr D Biol Crystallogr 60:1355-1363.