-
1
-
-
3042815334
-
Trypsin cleaves exclusively C-terminal to arginine and lysine residues
-
Olsen, J. V.; Ong, S. E.; Mann, M. Trypsin cleaves exclusively C-terminal to arginine and lysine residues Mol. Cell. Proteomics 2004, 3 (6) 608-614
-
(2004)
Mol. Cell. Proteomics
, vol.3
, Issue.6
, pp. 608-614
-
-
Olsen, J.V.1
Ong, S.E.2
Mann, M.3
-
2
-
-
24044487850
-
Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer - I. How much of the data is theoretically interpretable by search engines?
-
Chalkley, R. J.; Baker, P. R.; Hansen, K. C.; Medzihradszky, K. F.; Allen, N. P.; Rexach, M.; Burlingame, A. L. Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer-I. How much of the data is theoretically interpretable by search engines? Mol. Cell. Proteomics 2005, 4 (8) 1189-1193
-
(2005)
Mol. Cell. Proteomics
, vol.4
, Issue.8
, pp. 1189-1193
-
-
Chalkley, R.J.1
Baker, P.R.2
Hansen, K.C.3
Medzihradszky, K.F.4
Allen, N.P.5
Rexach, M.6
Burlingame, A.L.7
-
3
-
-
34848903890
-
The implications of proteolytic background for shotgun proteomics
-
Picotti, P.; Aebersold, R.; Domon, B. The implications of proteolytic background for shotgun proteomics Mol. Cell. Proteomics 2007, 6 (9) 1589-1598
-
(2007)
Mol. Cell. Proteomics
, vol.6
, Issue.9
, pp. 1589-1598
-
-
Picotti, P.1
Aebersold, R.2
Domon, B.3
-
4
-
-
38649098134
-
Does trypsin cut before proline?
-
Rodriguez, J.; Gupta, N.; Smith, R. D.; Pevzner, P. A. Does trypsin cut before proline? J. Proteome Res. 2008, 7 (1) 300-305
-
(2008)
J. Proteome Res.
, vol.7
, Issue.1
, pp. 300-305
-
-
Rodriguez, J.1
Gupta, N.2
Smith, R.D.3
Pevzner, P.A.4
-
5
-
-
30044447894
-
Efficient and specific trypsin digestion of microgram to nanogram quantities of proteins in organic-aqueous solvent systems
-
Strader, M. B.; Tabb, D. L.; Hervey, W. J.; Pan, C.; Hurst, G. B. Efficient and specific trypsin digestion of microgram to nanogram quantities of proteins in organic-aqueous solvent systems Anal. Chem. 2006, 78 (1) 125-134
-
(2006)
Anal. Chem.
, vol.78
, Issue.1
, pp. 125-134
-
-
Strader, M.B.1
Tabb, D.L.2
Hervey, W.J.3
Pan, C.4
Hurst, G.B.5
-
6
-
-
67049155252
-
Taking advantage of nonspecific trypsin cleavages for the identification of seed storage proteins in cereals
-
Sergeant, K.; Pinheiro, C.; Hausman, J. F.; Ricardo, C. P.; Renaut, J. Taking advantage of nonspecific trypsin cleavages for the identification of seed storage proteins in cereals J. Proteome Res. 2009, 8 (6) 3182-3190
-
(2009)
J. Proteome Res.
, vol.8
, Issue.6
, pp. 3182-3190
-
-
Sergeant, K.1
Pinheiro, C.2
Hausman, J.F.3
Ricardo, C.P.4
Renaut, J.5
-
7
-
-
77955116090
-
Analyzing protease specificity and detecting in vivo proteolytic events using tandem mass spectrometry
-
Gupta, N.; Hixson, K. K.; Culley, D. E.; Smith, R. D.; Pevzner, P. A. Analyzing protease specificity and detecting in vivo proteolytic events using tandem mass spectrometry Proteomics 2010, 10 (15) 2833-2844
-
(2010)
Proteomics
, vol.10
, Issue.15
, pp. 2833-2844
-
-
Gupta, N.1
Hixson, K.K.2
Culley, D.E.3
Smith, R.D.4
Pevzner, P.A.5
-
8
-
-
84855877960
-
Systematic and quantitative comparison of digest efficiency and specificity reveals the impact of trypsin quality on MS-based proteomics
-
Burkhart, J. M.; Schumbrutzki, C.; Wortelkamp, S.; Sickmann, A.; Zahedi, R. P. Systematic and quantitative comparison of digest efficiency and specificity reveals the impact of trypsin quality on MS-based proteomics J. Proteomics 2012, 75 (4) 1454-1462
-
(2012)
J. Proteomics
, vol.75
, Issue.4
, pp. 1454-1462
-
-
Burkhart, J.M.1
Schumbrutzki, C.2
Wortelkamp, S.3
Sickmann, A.4
Zahedi, R.P.5
-
9
-
-
9444223130
-
Inhibition of Chymotrypsin Activity in Crystalline Trypsin Preparations
-
Kostka, V.; Carpenter, F. H. Inhibition of Chymotrypsin Activity in Crystalline Trypsin Preparations J. Biol. Chem. 1964, 239, 1799-1803
-
(1964)
J. Biol. Chem.
, vol.239
, pp. 1799-1803
-
-
Kostka, V.1
Carpenter, F.H.2
-
10
-
-
0017375309
-
Stabilization of bovine trypsin by reductive methylation
-
Rice, R. H.; Means, G. E.; Brown, W. D. Stabilization of bovine trypsin by reductive methylation Biochim. Biophys. Acta 1977, 492 (2) 316-321
-
(1977)
Biochim. Biophys. Acta
, vol.492
, Issue.2
, pp. 316-321
-
-
Rice, R.H.1
Means, G.E.2
Brown, W.D.3
-
11
-
-
0025217244
-
Primary sequence information from intact proteins by electrospray ionization tandem mass spectrometry
-
Loo, J. A.; Edmonds, C. G.; Smith, R. D. Primary sequence information from intact proteins by electrospray ionization tandem mass spectrometry Science 1990, 248 (4952) 201-204
-
(1990)
Science
, vol.248
, Issue.4952
, pp. 201-204
-
-
Loo, J.A.1
Edmonds, C.G.2
Smith, R.D.3
-
12
-
-
0002641659
-
Collisional Activation and Collision-Activated Dissociation of Large Multiply Charged Polypeptides and Proteins Produced by Electrospray Ionization
-
Smith, R. D.; Loo, J. A.; Barinaga, C. J.; Edmonds, C. G.; Udseth, H. R. Collisional Activation and Collision-Activated Dissociation of Large Multiply Charged Polypeptides and Proteins Produced by Electrospray Ionization J. Am. Soc. Mass Spectrom. 1990, 1 (1) 53-65
-
(1990)
J. Am. Soc. Mass Spectrom.
, vol.1
, Issue.1
, pp. 53-65
-
-
Smith, R.D.1
Loo, J.A.2
Barinaga, C.J.3
Edmonds, C.G.4
Udseth, H.R.5
-
13
-
-
0026424196
-
Use of a single-quadrupole mass spectrometer for collision-induced dissociation studies of multiply charged peptide ions produced by electrospray ionization
-
Katta, V.; Chowdhury, S. K.; Chait, B. T. Use of a single-quadrupole mass spectrometer for collision-induced dissociation studies of multiply charged peptide ions produced by electrospray ionization Anal. Chem. 1991, 63 (2) 174-178
-
(1991)
Anal. Chem.
, vol.63
, Issue.2
, pp. 174-178
-
-
Katta, V.1
Chowdhury, S.K.2
Chait, B.T.3
-
14
-
-
0038047154
-
Shotgun collision-induced dissociation of peptides using a time of flight mass analyzer
-
Purvine, S.; Eppel, J. T.; Yi, E. C.; Goodlett, D. R. Shotgun collision-induced dissociation of peptides using a time of flight mass analyzer Proteomics 2003, 3 (6) 847-850
-
(2003)
Proteomics
, vol.3
, Issue.6
, pp. 847-850
-
-
Purvine, S.1
Eppel, J.T.2
Yi, E.C.3
Goodlett, D.R.4
-
15
-
-
20444411182
-
Sonic spray as a dual polarity ion source for ion/ion reactions
-
Xia, Y.; Liang, X.; McLuckey, S. A. Sonic spray as a dual polarity ion source for ion/ion reactions Anal. Chem. 2005, 77 (11) 3683-3689
-
(2005)
Anal. Chem.
, vol.77
, Issue.11
, pp. 3683-3689
-
-
Xia, Y.1
Liang, X.2
McLuckey, S.A.3
-
16
-
-
33748765574
-
Tandem parallel fragmentation of peptides for mass spectrometry
-
Ramos, A. A.; Yang, H.; Rosen, L. E.; Yao, X. Tandem parallel fragmentation of peptides for mass spectrometry Anal. Chem. 2006, 78 (18) 6391-6397
-
(2006)
Anal. Chem.
, vol.78
, Issue.18
, pp. 6391-6397
-
-
Ramos, A.A.1
Yang, H.2
Rosen, L.E.3
Yao, X.4
-
17
-
-
33847352051
-
Use of an integrated MS-multiplexed MS/MS data acquisition strategy for high-coverage peptide mapping studies
-
Chakraborty, A. B.; Berger, S. J.; Gebler, J. C. Use of an integrated MS-multiplexed MS/MS data acquisition strategy for high-coverage peptide mapping studies Rapid Commun. Mass Spectrom. 2007, 21 (5) 730-744
-
(2007)
Rapid Commun. Mass Spectrom.
, vol.21
, Issue.5
, pp. 730-744
-
-
Chakraborty, A.B.1
Berger, S.J.2
Gebler, J.C.3
-
18
-
-
41149134523
-
Fully automated four-column capillary LC-MS system for maximizing throughput in proteomic analyses
-
Livesay, E. A.; Tang, K.; Taylor, B. K.; Buschbach, M. A.; Hopkins, D. F.; LaMarche, B. L.; Zhao, R.; Shen, Y.; Orton, D. J.; Moore, R. J.; Kelly, R. T.; Udseth, H. R.; Smith, R. D. Fully automated four-column capillary LC-MS system for maximizing throughput in proteomic analyses Anal. Chem. 2008, 80 (1) 294-302
-
(2008)
Anal. Chem.
, vol.80
, Issue.1
, pp. 294-302
-
-
Livesay, E.A.1
Tang, K.2
Taylor, B.K.3
Buschbach, M.A.4
Hopkins, D.F.5
Lamarche, B.L.6
Zhao, R.7
Shen, Y.8
Orton, D.J.9
Moore, R.J.10
Kelly, R.T.11
Udseth, H.R.12
Smith, R.D.13
-
19
-
-
50149117169
-
Spectral probabilities and generating functions of tandem mass spectra: A strike against decoy databases
-
Kim, S.; Gupta, N.; Pevzner, P. A. Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases J. Proteome Res. 2008, 7 (8) 3354-3363
-
(2008)
J. Proteome Res.
, vol.7
, Issue.8
, pp. 3354-3363
-
-
Kim, S.1
Gupta, N.2
Pevzner, P.A.3
-
20
-
-
78650147228
-
The Generating Function of CID, ETD, and CID/ETD Pairs of Tandem Mass Spectra: Applications to Database Search
-
Kim, S.; Mischerikow, N.; Bandeira, N.; Navarro, J. D.; Wich, L.; Mohammed, S.; Heck, A. J. R.; Pevzner, P. A. The Generating Function of CID, ETD, and CID/ETD Pairs of Tandem Mass Spectra: Applications to Database Search Mol. Cell. Proteomics 2010, 9 (12) 2840-2852
-
(2010)
Mol. Cell. Proteomics
, vol.9
, Issue.12
, pp. 2840-2852
-
-
Kim, S.1
Mischerikow, N.2
Bandeira, N.3
Navarro, J.D.4
Wich, L.5
Mohammed, S.6
Heck, A.J.R.7
Pevzner, P.A.8
-
21
-
-
12444272753
-
Use of artificial neural networks for the accurate prediction of peptide liquid chromatography elution times in proteome analyses
-
Petritis, K.; Kangas, L. J.; Ferguson, P. L.; Anderson, G. A.; Pasa-Tolic, L.; Lipton, M. S.; Auberry, K. J.; Strittmatter, E. F.; Shen, Y. F.; Zhao, R.; Smith, R. D. Use of artificial neural networks for the accurate prediction of peptide liquid chromatography elution times in proteome analyses Anal. Chem. 2003, 75 (5) 1039-1048
-
(2003)
Anal. Chem.
, vol.75
, Issue.5
, pp. 1039-1048
-
-
Petritis, K.1
Kangas, L.J.2
Ferguson, P.L.3
Anderson, G.A.4
Pasa-Tolic, L.5
Lipton, M.S.6
Auberry, K.J.7
Strittmatter, E.F.8
Shen, Y.F.9
Zhao, R.10
Smith, R.D.11
-
22
-
-
33746448330
-
Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information
-
Petritis, K.; Kangas, L. J.; Yan, B.; Monroe, M. E.; Strittmatter, E. F.; Qian, W. J.; Adkins, J. N.; Moore, R. J.; Xu, Y.; Lipton, M. S.; Ii, D. G. C.; Smith, R. D. Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information Anal. Chem. 2006, 78 (14) 5026-5039
-
(2006)
Anal. Chem.
, vol.78
, Issue.14
, pp. 5026-5039
-
-
Petritis, K.1
Kangas, L.J.2
Yan, B.3
Monroe, M.E.4
Strittmatter, E.F.5
Qian, W.J.6
Adkins, J.N.7
Moore, R.J.8
Xu, Y.9
Lipton, M.S.10
Ii, D.G.C.11
Smith, R.D.12
-
23
-
-
20444459841
-
Statistical characterization of the charge state and residue dependence of low-energy CID peptide dissociation patterns
-
Huang, Y.; Triscari, J. M.; Tseng, G. C.; Pasa-Tolic, L.; Lipton, M. S.; Smith, R. D.; Wysocki, V. H. Statistical characterization of the charge state and residue dependence of low-energy CID peptide dissociation patterns Anal. Chem. 2005, 77 (18) 5800-5813
-
(2005)
Anal. Chem.
, vol.77
, Issue.18
, pp. 5800-5813
-
-
Huang, Y.1
Triscari, J.M.2
Tseng, G.C.3
Pasa-Tolic, L.4
Lipton, M.S.5
Smith, R.D.6
Wysocki, V.H.7
-
24
-
-
38649129381
-
A data-mining scheme for identifying peptide structural motifs responsible for different MS/MS fragmentation intensity patterns
-
Huang, Y.; Tseng, G. C.; Yuan, S.; Pasa-Tolic, L.; Lipton, M. S.; Smith, R. D.; Wysocki, V. H. A data-mining scheme for identifying peptide structural motifs responsible for different MS/MS fragmentation intensity patterns J. Proteome Res. 2008, 7 (1) 70-79
-
(2008)
J. Proteome Res.
, vol.7
, Issue.1
, pp. 70-79
-
-
Huang, Y.1
Tseng, G.C.2
Yuan, S.3
Pasa-Tolic, L.4
Lipton, M.S.5
Smith, R.D.6
Wysocki, V.H.7
-
25
-
-
0014670506
-
Pseudotrypsin. A modified bovine trypsin produced by limited autodigestion
-
Smith, R. L.; Shaw, E. Pseudotrypsin. A modified bovine trypsin produced by limited autodigestion J. Biol. Chem. 1969, 244 (17) 4704-4712
-
(1969)
J. Biol. Chem.
, vol.244
, Issue.17
, pp. 4704-4712
-
-
Smith, R.L.1
Shaw, E.2
-
26
-
-
0000413586
-
Proteolytic activity of pseudotrypsin
-
Keil-Dlouha, V. V.; Zylber, N.; Imhoff, J.; Tong, N.; Keil, B. Proteolytic activity of pseudotrypsin FEBS Lett. 1971, 16 (4) 291-295
-
(1971)
FEBS Lett.
, vol.16
, Issue.4
, pp. 291-295
-
-
Keil-Dlouha, V.V.1
Zylber, N.2
Imhoff, J.3
Tong, N.4
Keil, B.5
-
27
-
-
43049168829
-
Enzymatic digestion of proteins in solution
-
Chapter 11, Unit 11.1.
-
Riviere, L. R.; Tempst, P. Enzymatic digestion of proteins in solution. Curr. Protoc. Protein Sci. 2001, Chapter 11, Unit 11.1.
-
(2001)
Curr. Protoc. Protein Sci.
-
-
Riviere, L.R.1
Tempst, P.2
|