Direct approach for qualitative and quantitative characterization of glycoproteins using tandem mass tags and an LTQ orbitrap XL electron transfer dissociation hybrid mass spectrometer

Analytical Chemistry

Volumn 85, Issue 3, 2013, Pages 1531-1539

  Ye, Hongping ^a   Boyne, Michael T ^a   Buhse, Lucinda F ^a   Hill, John ^a,b  

^a CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

^b ONDQA/DPAII ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COLLISION-INDUCED DISSOCIATION; COLLISIONAL DISSOCIATION; DIRECT APPROACH; DISSOCIATION METHODS; ELECTRON TRANSFER DISSOCIATION; FRAGMENT IONS; GLYCAN STRUCTURES; GLYCANS; GLYCOFORMS; GLYCOPEPTIDES; GLYCOSIDIC BOND; GLYCOSYLATED; HIGH RESOLUTION; LIQUID CHROMATOGRAPHY-MASS SPECTROMETRY; MASS ANALYZERS; ORBITRAP; PEPTIDE BACKBONES; PEPTIDE BONDS; QUANTITATIVE CHARACTERIZATION; QUANTITATIVE TECHNIQUES; SELECTIVE DETECTION; TANDEM MASS; TANDEM MASS SPECTROMETRY;

CARBOHYDRATES; CHARACTERIZATION; ELECTRON TRANSITIONS; GLYCOPROTEINS; MAMMALS; MASS SPECTROMETERS; MASS SPECTROMETRY; PEPTIDES;

DISSOCIATION;

GLYCOPROTEIN;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CATTLE; ELECTRON TRANSPORT; LIQUID CHROMATOGRAPHY; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; PHYSIOLOGY; TANDEM MASS SPECTROMETRY;

AMINO ACID SEQUENCE; ANIMALS; CATTLE; CHROMATOGRAPHY, LIQUID; ELECTRON TRANSPORT; GLYCOPROTEINS; MOLECULAR SEQUENCE DATA; TANDEM MASS SPECTROMETRY;

EID: 84873351558     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac3026465     Document Type: Article

References (47)

1. Brooks, S. A. Mol. Biotechnol. 2004, 28, 241-255
2. Warnock, J. N.; Al-Rubeai, M. Biotechnol. Appl. Biochem. 2006, 45, 1-12
3. Mukovozov, I.; Sabijicl, T.; Hortelano, G.; Ofosu, F. A. Thromb. Haemostasis 2008, 99, 874-882
4. Haller, C. A.; Cosenza, M. E.; Sullivan, J. T. Clin. Pharmacol. Ther. 2008, 84, 624-627
5. Kawasaki, N.; Itoh, S.; Hashii, N.; Takakura, D.; Qin, Y.; Huang, X.; Yamaguchi, T. Biol. Pharm. Bull. 2009, 32, 796-800
6. Rudd, P. M.; Elliott, T.; Cresswell, P.; Wilson, I. A.; Dwek, R. A. Science 2001, 291, 2370-2376
7. Senger, R. S.; Karim, M. N. Biotechnol. Prog. 2003, 19, 1199-1209
8. Cabrera, G.; Cremata, J. A.; Valdes, R.; Garcia, R.; Gonzalez, Y.; Montesino, R.; Gomez, H.; Gonzalez, M. Biotechnol. Appl. Biochem. 2005, 41, 67-76
9. Kunkel, J. P.; Jan, D. C.; Butler, M.; Jamieson, J. C. Biotechnol. Prog. 2000, 16, 462-470
10. Hossler, P.; Khattak, S. F.; Li, Z. J. Glycobiology 2009, 19, 936-949
11. Liszewski, K. Genet. Eng. News 2005, 25, 22-22
12. Dwek, R. A.; Butters, T. D.; Platt, F. M.; Zitzmann, N. Nat. Rev. Drug Discovery 2002, 1, 65-75
13. Helenius, A.; Aebi, M. Science 2001, 291, 2364-2369
14. Okuyama, N.; Ide, Y.; Nakano, M.; Nakagawa, T.; Yamanaka, K.; Moriwaki, K.; Murata, K.; Ohigashi, H.; Yokoyama, S.; Eguchi, H.; Ishikawa, O.; Ito, T.; Kato, M.; Kasahara, A.; Kawano, S.; Gu, J.; Taniguchi, N.; Miyoshi, E. Int. J. Cancer 2006, 118, 2803-2808
15. Kyselova, Z.; Mechref, Y.; Al Bataineh, M. M.; Dobrolecki, L. E.; Hickey, R. J.; Vinson, J.; Sweeney, C. J.; Novotny, M. V. J. Proteome Res. 2007, 6, 1822-1832
16. Reid, C. Q.; Tait, A.; Baldascini, H.; Mohindra, A.; Racher, A.; Bilsborough, S.; Smales, C. M.; Hoare, M. Biotechnol. Bioeng. 2010, 107, 85-95
17. Chow, S. C.; Endrenyi, L.; Lachenbruch, P. A.; Yang, L. Y.; Chi, E. Biosimilars 2011, 1, 13-26
18. Van den Steen, P.; Rudd, P. M.; Dwek, R. A.; Opdenakker, G. Crit. Rev. Biochem. Mol. Biol. 1998, 33, 151-208
19. Schiel, J. E. Anal. Bioanal. Chem. 2012, 404, 1141-1149
20. Lazar, I. M.; Lazar, A. C.; Cortes, D. F.; Kabulski, J. L. Electrophoresis 2011, 32, 3-13
21. Peterman, S. M.; Mulholland, J. J. J. Am. Soc. Mass Spectrom. 2006, 17, 168-179
22. Chalkley, R. J.; Thalhammer, A.; Schoepfer, R.; Burlingame, A. L. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 8894-8899
23. Alley, W. R., Jr.; Mechref, Y.; Novotny, M. V. Rapid Commun. Mass Spectrom. 2009, 23, 161-170
24. Wu, S. L.; Huhmer, A. F.; Hao, Z.; Karger, B. L. J. Proteome Res. 2007, 6, 4230-4244
25. Schiel, J. E.; Au, J.; He, H. J.; Phinney, K. W. Anal. Bioanal. Chem. 2012, 403, 2279-2289
26. Schiel, J. E.; Lowenthal, M. S.; Phinney, K. W. J. Mass Spectrom. 2011, 46, 649-657
27. Hua, S.; Nwosu, C. C.; Strum, J. S.; Seipert, R. R.; An, H. J.; Zivkovic, A. M.; German, J. B.; Lebrilla, C. B. Anal. Bioanal. Chem. 2012, 403, 1291-1302
28. Ritchie, M. A.; Gill, A. C.; Deery, M. J.; Lilley, K. J. Am. Soc. Mass Spectrom. 2002, 13, 1065-1077
29. Morelle, W.; Canis, K.; Chirat, F.; Faid, V.; Michalski, J. C. Proteomics 2006, 6, 3993-4015
30. Mikesh, L. M.; Ueberheide, B.; Chi, A.; Coon, J. J.; Syka, J. E.; Shabanowitz, J.; Hunt, D. F. Biochim. Biophys. Acta 2006, 1764, 1811-1822
31. Kjeldsen, F.; Giessing, A. M.; Ingrell, C. R.; Jensen, O. N. Anal. Chem. 2007, 79, 9243-9252
32. Housley, M. P.; Rodgers, J. T.; Udeshi, N. D.; Kelly, T. J.; Shabanowitz, J.; Hunt, D. F.; Puigserver, P.; Hart, G. W. J. Biol. Chem. 2008, 283, 16283-16292
33. Bantscheff, M.; Schirle, M.; Sweetman, G.; Rick, J.; Kuster, B. Anal. Bioanal. Chem. 2007, 389, 1017-1031
34. Ong, S. E.; Mann, M. Nat. Chem. Biol. 2005, 1, 252-262
35. Ye, H.; Hill, J.; Kauffman, J.; Han, X. Anal. Biochem. 2010, 400, 46-55
36. Viner, R. I.; Zhang, T.; Second, T.; Zabrouskov, V. J. Proteomics 2009, 72, 874-885
37. Dayon, L.; Hainard, A.; Licker, V.; Turck, N.; Kuhn, K.; Hochstrasser, D. F.; Burkhard, P. R.; Sanchez, J. C. Anal. Chem. 2008, 80, 2921-2931
38. Phanstiel, D.; Zhang, Y.; Marto, J. A.; Coon, J. J. J. Am. Soc. Mass. Spectrom. 2008, 19, 1255-1262
39. Bantscheff, M.; Boesche, M.; Eberhard, D.; Matthieson, T.; Sweetman, G.; Kuster, B. Mol. Cell. Proteomics 2008, 7, 1702-1713
40. Zhang, S.; Liu, X.; Kang, X.; Sun, C.; Lu, H.; Yang, P.; Liu, Y. Talanta 2012, 91, 122-127
41. Zhang, Y.; Yin, H.; Lu, H. Glycoconj J 2012, 29, 249-258
42. This work was first reported as a poster presented at AAPS Annual Meeting 2011, in Washington, DC.
43. http://www.piercenet.com/instructions/2162073.pdf.
44. http://ca.expasy.org/tools/glycomod (accessed October 5, 2012).
45. https://prosightptm2.northwestern.edu (accessed October 5, 2012).
46. www.matrixscience.com (accessed August 10, 2012).
47. Huang, Y.; Mechref, Y.; Novotny, M. V. Anal. Chem. 2001, 73, 6063-6069