Identification of recent hybridization between gray wolves and domesticated dogs by SNP genotyping

Mammalian Genome

Volumn 24, Issue 1-2, 2013, Pages 80-88

  Van Holdt, Bridgett M ^a,b   Pollinger, John P ^a   Earl, Dent A ^c   Parker, Heidi G ^d   Ostrander, Elaine A ^d   Wayne, Robert K ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b PRINCETON UNIVERSITY   (United States)

^c University of California Santa Cruz   (United States)

^d NATIONAL HUMAN GENOME RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL TISSUE; ARTICLE; BACKCROSSING; DOG; DOMESTIC ANIMAL; GENEALOGY; GENOTYPE; HYBRID; HYBRIDIZATION; INHERITANCE; NONHUMAN; SINGLE NUCLEOTIDE POLYMORPHISM; WOLF;

ALLELES; ANIMALS; DOGS; GENE FREQUENCY; GENETIC LOCI; GENOTYPE; HYBRIDIZATION, GENETIC; MICROSATELLITE REPEATS; POLYMORPHISM, SINGLE NUCLEOTIDE; PRINCIPAL COMPONENT ANALYSIS; WOLVES;

EID: 84873308886     PISSN: 09388990     EISSN: 14321777     Source Type: Journal    
DOI: 10.1007/s00335-012-9432-0     Document Type: Article

References (31)

1. Adams JR, Kelly BT, Waits LP (2003) Using faecal DNA sampling and GIS to monitor hybridization between red wolves (Canis rufus) and coyotes (Canis latrans). Mol Ecol 12(8):2175-2186
2. Akey JM, Ruhe AL, Akey DT, Wong AK, Connelly CF et al (2010) Tracking footprints of artificial selection in the dog genome. Proc Natl Acad Sci USA 107(3):1160-1165
3. Andersone Z, Lucchini V, Randi E, Ozolins J (2002) Hybridisation between wolves and dogs in Latvia as documented using mitochondrial and microsatellite DNA markers. Mamm Biol 67:79-90
4. Barton NH (2000) Estimating multilocus linkage disequilibria. Heredity 84:373-389
5. Bohling J, Waits L (2011) Assessing the prevalence of hybridization between sympatric Canis species surrounding the red wolf (Canis rufus) recovery area in North Carolina. Mol Ecol 20(10):2142-2156
6. Boyko AR, Quignon P, Li L, Schoenebeck JJ, Degenhardt JD et al (2010) A simple genetic architecture underlies morphological variation in dogs. Plos biol 8(8):e1000451
7. Fain S, Straughan D, Taylor B (2010) Genetic outcomes of wolf recovery in the western Great Lakes states. Conserv Genet 11(5):1747-1765
8. Fredrickson R, Hedrick P (2006) Dynamics of hybridization and introgression in red wolves and coyotes. Conserv Biol 20(4):1272-1283
9. Germonpre M, Sablin M, Stevens R, Hedges R, Hofreiter M et al (2008) Fossil dogs and wolves from Palaeolithic sites in Belgium, the Ukraine and Russia: osteometry, ancient DNA and stable isotopes. J Archaeol Sci 36:473-490
10. Hedrick PW, Fredrickson RJ (2008) Captive breeding and the reintroduction of Mexican and red wolves. Mol Ecol 17(1):344-350
11. Jones P, Chase K, Martin A, Ostrander EA, Lark KG (2008) Singlenucleotide polymorphism-based association mapping of dog stereotypes. Genetics 179:1033-1044
12. Liew M, Pryor R, Palais R, Meadows C, Erali M et al (2004) Genotyping of single-nucleotide polymorphisms by high-resolution melting of small amplicons. Clin Chem 50(7):1156-1164
13. Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB et al (2005) Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 438(7069):803-819
14. Miller CR, Adams JR, Waits LP (2003) Pedigree-based assignment tests for reversing coyote (Canis latrans) introgression into the wild red wolf (Canis rufus) population. Mol Ecol 12:3287-3301
15. Parker HG, Kim LV, Sutter NB, Carlson S, Lorentzen TD et al (2004) Genetic structure of the purebred domestic dog. Science 304(5674):1160-1164
16. Parker HG, Kukekova AV, Akey DT, Goldstein O, Kirkness EF et al (2007) Breed relationships facilitate fine-mapping studies: a 7.8 kb deletion cosegregates with Collie eye anomaly across multiple dog breeds. Genome Res 17(11):1562-1571
17. Price A, Patterson N, Plenge R, Weinblatt M, Shadick N et al (2006) Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet 38(8):904-909
18. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945-959
19. Randi E (2008) Detecting hybridization between wild species and their domesticated relatives. Mol Ecol 17(1):285-293
20. Randi E, Lucchini V (2002) Detecting rare introgression of domestic dog genes into wild wolf (Canis lupus) populations by Bayesian admixture analyses of microsatellite variation. Conserv Genet 3:31-45
21. Randi E, Pierpaoli M, Beaumont M, Ragni B, Sforzi A (2001) Genetic identification of wild and domestic cats (Felis silvestris) and their hybrids using Bayesian clustering methods. Mol Biol Evol 18(9):1679-1693
22. Sablin M, Khlopachev G (2002) The earliest Ice Age dogs: evidence from Eliseevichi I. Curr Anthropol 45(5):795-819
23. Savolainen P, Zhang YP, Luo L, Lundeberg J, Leitner T (2002) Genetic evidence for an East Asian origin of domestic dogs. Science 298(5598):1610-1613
24. Tang H, Coram M, Wang P, Zhu X, Risch N (2006) Reconstructing genetic ancestry blocks in admixed individuals. Am J Hum Genet 79(1):1-12
25. Verardi A, Lucchini V, Randi E (2006) Detecting introgressive hybridization between free-ranging domestic dogs and wild wolves (Canis lupus) by admixture linkage disequilibrium analysis. Mol Ecol 15:2845-2855
26. Vilà C, Wayne RK (1999) Hybridization between wolves and dogs. Conserv Biol 13(1):195-198
27. Vilà C, Savolainen P, Maldonado JE, Amorim IR, Rice JE et al (1997) Multiple and ancient origins of the domestic dog. Science 276(5319):1687-1689
28. Vilà C, Walker C, Sundqvist A, Flagstad O, Andersone Z et al (2003) Combined use of maternal, paternal and bi-parental genetic markers for the identification of wolf-dog hybrids. Heredity 90(1):17-24
29. Vilà C, Seddon J, Ellegren H (2005) Genes of domestic mammals augmented by backcrossing with wild ancestors. Trends Genet 21(4):214-218
30. Von Holdt BM, Pollinger JP, Lohmueller KE, Han E, Parker HG et al (2010) Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication. Nature 464:898-903
31. Von Holdt BM, Pollinger JP, Earl DA, Knowles JC, Boyko AR et al (2011) A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids. Genome Res 21(8):1294-1305