A microRNA-transcription factor module regulates lateral organ size and patterning in Arabidopsis

Plant Journal

Volumn 58, Issue 3, 2009, Pages 450-463

  Larue, Clayton T ^a,b   Wen, Jiangqi ^a,c   Walker, John C ^a  

^a UNIVERSITY OF MISSOURI   (United States)

^b UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^c PLANT BIOLOGY DIVISION   (United States)

Author keywords

Arabidopsis; CUC2; Lateral organ growth; Lateral organ patterning; MicroRNAs; MiRNA164

Indexed keywords

ARABIDOPSIS;

ARABIDOPSIS PROTEIN; CUC2 PROTEIN, ARABIDOPSIS; MICRORNA; MICRORNA 164, ARABIDOPSIS; MICRORNA-164, ARABIDOPSIS; PLANT RNA; TRANSCRIPTION FACTOR;

ARABIDOPSIS; ARTICLE; CELL PROLIFERATION; FLOWER; FRUIT; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; ORGAN SIZE; POINT MUTATION; SCANNING ELECTRON MICROSCOPY; TRANSGENIC PLANT;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CELL PROLIFERATION; FLOWERS; FRUIT; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; MICRORNAS; MICROSCOPY, ELECTRON, SCANNING; ORGAN SIZE; PLANTS, GENETICALLY MODIFIED; POINT MUTATION; RNA, PLANT; TRANSCRIPTION FACTORS;

EID: 66149162003     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2009.03796.x     Document Type: Article

References (50)

1. Aida, M., Ishida, T., Fukaki, H., Fujisawa, H. Tasaka, M. (1997) Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant. Plant Cell, 9, 841 857. (Pubitemid 28173836)
2. Aida, M., Ishida, T. Tasaka, M. (1999) Shoot apical meristem and cotyledon formation during Arabidopsis embryogenesis: interaction among the CUP-SHAPED COTYLEDON and SHOOT MERISTEMLESS genes. Development, 126, 1563 1570. (Pubitemid 29204321)
3. Alvarez, J. Smyth, D. (1999) CRABS CLAW and SPATULA, two Arabidopsis genes that control carpel development in parallel with AGAMOUS. Development, 126, 2377 2386. (Pubitemid 29299007)
4. Anastasiou, E., Kenz, S., Gerstung, M., MacLean, D., Timmer, J., Fleck, C. Lenhard, M. (2007) Control of plant organ size by KLUH-CYP78A5-dependent intercellular signaling. Dev. Cell, 13, 843 856. (Pubitemid 350163035)
5. Baker, C., Sieber, P., Wellmer, F. Meyerowitz, E. (2005) The early extra petals1 mutant uncovers a role for microRNA miR164c in regulating petal number in Arabidopsis. Curr. Biol. 15, 303 315. (Pubitemid 40263362)
6. Bartel, D. (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell, 116, 281 297. (Pubitemid 38167318)
7. Bennett, S.R.M., Alvarez, J., Bossinger, G. Smyth, D.R. (1995) Morphogenesis in pinoid mutants of Arabidopsis thaliana. Plant J. 8, 505 520.
8. Bowman, J. (1994) Arabidopsis: An Atlas of Morphology and Development. New York : Springer-Verlag.
9. Bowman, J. Smyth, D. (1999) CRABS CLAW, a gene that regulates carpel and nectary development in Arabidopsis, encodes a novel protein with zinc finger and helix-loop-helix domains. Development, 126, 2387 2396. (Pubitemid 29299008)
10. Breuil-Broyer, S., Morel, P., de Almeida-Engler, J., Coustham, V., Negrutiu, I. Trehin, C. (2004) High-resolution boundary analysis during Arabidopsis thaliana flower development. Plant J. 38, 182 192. (Pubitemid 38448455)
11. Clough, S. Bent, A. (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735 743.
12. Clouse, S.D., Langford, M. McMorris, T.C. (1996) A brassinosteroid- insensitive mutant in Arabidopsis thaliana exhibits multiple defects in growth and development. Plant Physiol. 111, 671 678. (Pubitemid 126450540)
13. Colon-Carmona, A., You, R., Haimovitch-Gal, T. Doerner, P. (1999) Spatio-temporal analysis of mitotic activity with a labile cyclin-GUS fusion protein. Plant J. 20, 503 508.
14. Disch, S., Anastasiou, E., Sharma, V., Laux, T., Fletcher, J. Lenhard, M. (2006) The E3 ubiquitin ligase BIG BROTHER controls Arabidopsis organ size in a dosage-dependent manner. Curr. Biol. 16, 272 279. (Pubitemid 43190226)
15. Elliott, R.C., Betzner, A.S., Huttner, E., Oakes, M.P., Tucker, W.Q.J., Gerentes, D., Perez, P. Smyth, D.R. (1996) AINTEGUMENTA, an APETALA2-like gene of Arabidopsis with pleiotropic roles in ovule development and floral organ growth. Plant Cell, 8, 155 168.
16. Grant-Downton, R.T. Dickinson, H.G. (2005) Epigenetics and its implications for plant biology. 1. The epigenetic network in plants. Ann. Bot. 96, 1143 1164. (Pubitemid 41668795)
17. Hibara, K.-i., Karim, M.R., Takada, S., Taoka, K.-i., Furutani, M., Aida, M. Tasaka, M. (2006) Arabidopsis CUP-SHAPED COTYLEDON3 regulates postembryonic shoot meristem and organ boundary formation. Plant Cell, 18, 2946 2957. (Pubitemid 46013268)
18. Hu, Y., Xie, Q. Chua, N.-H. (2003) The Arabidopsis auxin-inducible gene ARGOS controls lateral organ size. Plant Cell, 15, 1951 1961. (Pubitemid 37144053)
19. Hu, Y., Poh, H. Chua, N. (2006) The Arabidopsis ARGOS-LIKE gene regulates cell expansion during organ growth. Plant J. 47, 1 9. (Pubitemid 43883009)
20. Ishida, T., Aida, M., Takada, S. Tasaka, M. (2000) Involvement of CUP-SHAPED COTYLEDON genes in gynoecium and ovule development in Arabidopsis thaliana. Plant Cell Physiol. 41, 60 67. (Pubitemid 30097494)
21. Jones-Rhoades, M., Bartel, D. Bartel, B. (2006) MicroRNAs and their regulatory roles in plants. Annu. Rev. Plant Biol. 57, 19 53. (Pubitemid 44061017)
22. Kasschau, K.D., Xie, Z., Allen, E., Llave, C., Chapman, E.J., Krizan, K.A. Carrington, J.C. (2003) P1-HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA function. Dev. Cell, 4, 205 217. (Pubitemid 36221797)
23. Kauschmann, A., Jessop, A., Koncz, C., Szekeres, M., Willmitzer, L. Altmann, T. (1996) Genetic evidence for an essential role of brassinosteroids in plant development. Plant J. 9, 701 713. (Pubitemid 126661051)
24. Kidner, C.A. Martienssen, R.A. (2003) Macro effects of microRNAs in plants. Trends Genet. 19, 13 16. (Pubitemid 35472173)
25. Krizek, B.A. (1999) Ectopic expression of AINTEGUMENTA in Arabidopsis plants results in increased growth of floral organs. Dev. Genet. 25, 224 236. (Pubitemid 29508586)
26. Laufs, P., Peaucelle, A., Morin, H. Traas, J. (2004) MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems. Development, 131, 4311 4322. (Pubitemid 39276198)
27. Laux, T., Mayer, K., Berger, J. Jurgens, G. (1996) The WUSCHEL gene is required for shoot and floral meristem integrity in Arabidopsis. Development, 122, 87 96. (Pubitemid 26038421)
28. Li, Y., Zheng, L., Corke, F., Smith, C. Bevan, M.W. (2008) Control of final seed and organ size by the DA1 gene family in Arabidopsis thaliana. Genes Dev. 22, 1331 1336. (Pubitemid 351717523)
29. Lincoln, C., Long, J., Yamaguchi, J., Serikawa, K. Hake, S. (1994) A knotted1-like homeobox gene in Arabidopsis is expressed in the vegetative meristem and dramatically alters leaf morphology when overexpressed in transgenic plants. Plant Cell, 6, 1859 1876. (Pubitemid 24986959)
30. Mallory, A., Dugas, D., Bartel, D. Bartel, B. (2004a) MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs. Curr. Biol. 14, 1035 1046. (Pubitemid 38791565)
31. Mallory, A., Reinhart, B., Jones-Rhoades, M., Tang, G., Zamore, P., Barton, M. Bartel, D. (2004b) MicroRNA control of PHABULOSA in leaf development: importance of pairing to the microRNA 5′ region. EMBO J. 23, 3356 3364. (Pubitemid 39209159)
32. Mizukami, Y. Fischer, R.L. (2000) Plant organ size control: AINTEGUMENTA regulates growth and cell numbers during organogenesis. Proc. Natl Acad. Sci. USA, 97, 942 947. (Pubitemid 30070414)
33. Nemhauser, J., Feldman, L. Zambryski, P. (2000) Auxin and ETTIN in Arabidopsis gynoecium morphogenesis. Development, 127, 3877 3888. (Pubitemid 30793767)
34. Nikovics, K., Blein, T., Peaucelle, A., Ishida, T., Morin, H., Aida, M. Laufs, P. (2006) The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis. Plant Cell, 18, 2929 2945. (Pubitemid 46013267)
35. Peaucelle, A., Morin, H., Traas, J. Laufs, P. (2007) Plants expressing a miR164-resistant CUC2 gene reveal the importance of post-meristematic maintenance of phyllotaxy in Arabidopsis. Development, 134, 1045 1050. (Pubitemid 46630072)
36. Reinhart, B.J., Weinstein, E.G., Rhoades, M.W., Bartel, B. Bartel, D.P. (2002) MicroRNAs in plants. Genes Dev. 16, 1616 1626. (Pubitemid 34743323)
37. Roe, J., Rivin, C., Sessions, R., Feldmann, K. Zambryski, P. (1993) The Tousled gene in A. thaliana encodes a protein kinase homolog that is required for leaf and flower development. Cell, 75, 939 950.
38. Roe, J.L., Nemhauser, J.L. Zambryski, P.C. (1997) TOUSLED participates in apical tissue formation during gynoecium development in Arabidopsis. Plant Cell, 9, 335 353. (Pubitemid 27176823)
39. Schruff, M.C., Spielman, M., Tiwari, S., Adams, S., Fenby, N. Scott, R.J. (2006) The AUXIN RESPONSE FACTOR 2 gene of Arabidopsis links auxin signalling, cell division, and the size of seeds and other organs. Development, 133, 251 261. (Pubitemid 43210714)
40. Sessions, R. Zambryski, P. (1995) Arabidopsis gynoecium structure in the wild and in ettin mutants. Development, 121, 1519 1532.
41. Shpak, E.D., Lakeman, M.B. Torii, K.U. (2003) Dominant-negative receptor uncovers redundancy in the Arabidopsis ERECTA leucine-rich repeat receptor-like kinase signaling pathway that regulates organ shape. Plant Cell, 15, 1095 1110. (Pubitemid 36579970)
42. Shpak, E.D., Berthiaume, C.T., Hill, E.J. Torii, K.U. (2004) Synergistic interaction of three ERECTA-family receptor-like kinases controls Arabidopsis organ growth and flower development by promoting cell proliferation. Development, 131, 1491 1501. (Pubitemid 38559277)
43. Sieber, P., Wellmer, F., Gheyselinck, J., Riechmann, J.L. Meyerowitz, E.M. (2007) Redundancy and specialization among plant microRNAs: role of the MIR164 family in developmental robustness. Development, 134, 1051 1060. (Pubitemid 46630073)
44. Smyth, D.R., Bowman, J.L. Meyerowitz, E.M. (1990) Early flower development in Arabidopsis. Plant Cell, 2, 755 767. (Pubitemid 120015483)
45. Takada, S., Hibara, K., Ishida, T. Tasaka, M. (2001) The CUP-SHAPED COTYLEDON1 gene of Arabidopsis regulates shoot apical meristem formation. Development, 128, 1127 1135. (Pubitemid 32401428)
46. Talbert, P., Adler, H., Parks, D. Comai, L. (1995) The REVOLUTA gene is necessary for apical meristem development and for limiting cell divisions in the leaves and stems of Arabidopsis thaliana. Development, 121, 2723 2735.
47. Torii, K.U., Mitsukawa, N., Oosumi, T., Matsuura, Y., Yokoyama, R., Whittier, R.F. Komeda, Y. (1996) The Arabidopsis ERECTA gene encodes a putative receptor protein kinase with extracellular leucine-rich repeats. Plant Cell, 8, 735 746. (Pubitemid 126632554)
48. Vielle-Calzada, J.-P., Thomas, J., Spillane, C., Coluccio, A., Hoeppner, M.A. Grossniklaus, U. (1999) Maintenance of genomic imprinting at the Arabidopsis medea locus requires zygotic DDM1 activity. Genes Dev. 13, 2971 2982.
49. Vroemen, C.W., Mordhorst, A.P., Albrecht, C., Kwaaitaal, M.A. de Vries, S.C. (2003) The CUP-SHAPED COTYLEDON3 gene is required for boundary and shoot meristem formation in Arabidopsis. Plant Cell, 15, 1563 1577. (Pubitemid 36872597)
50. Wang, H., Zhou, Y., Gilmer, S., Whitwill, S. Fowke, L. (2000) Expression of the plant cyclin-dependent kinase inhibitor ICK1 affects cell division, plant growth and morphology. Plant J. 24, 613 623. (Pubitemid 32040061)