Systems biology analyses of gene expression and genome wide association study data in obstructive sleep apnea

Pacific Symposium on Biocomputing 2011, PSB 2011

Volumn , Issue , 2011, Pages 14-25

  Liu, Yu ^a   Patel, Sanjay ^b   Nibbe, Rod ^a   Maxwell, Sean ^a   Chowdhury, Salim A ^b   Koyuturk, Mehmet ^b   Zhu, Xiaofeng ^b   Larkin, Emma K ^c   Buxbaum, Sarah G ^d   Punjabi, Naresh M ^e   Gharib, Sina A ^f   Redline, Susan ^b,g   Chance, Mark R ^a  

^a CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b CASE WESTERN RESERVE UNIVERSITY   (United States)

^c VANDERBILT UNIVERSITY MEDICAL CENTER   (United States)

^d JACKSON STATE UNIVERSITY   (United States)

^e JOHNS HOPKINS BLOOMBERG SCHOOL OF PUBLIC HEALTH   (United States)

^f UNIVERSITY OF WASHINGTON   (United States)

^g BETH ISRAEL DEACONESS MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMMERCIAL SOFTWARE; EXPRESSION DATA; GENE EXPRESSION PROFILES; GENOME-WIDE ASSOCIATION; HIGH DIMENSIONAL DATA; METABOLIC DISEASE; MOLECULAR ETIOLOGY; MUTUAL INFORMATIONS; OBSTRUCTIVE SLEEP APNEA; P-VALUES; PHOSPHOINOSITIDE 3-KINASE; PROTEIN-PROTEIN INTERACTIONS; RISK FACTORS; SLEEP DISORDERS; SUB-NETWORK; SUBNETWORKS; SYSTEMS BIOLOGY;

GENE EXPRESSION; INFORMATION THEORY; PROTEINS;

ASSOCIATION REACTIONS;

ADIPOSE TISSUE; ALGORITHM; ARTICLE; BIOLOGY; CASE CONTROL STUDY; DNA MICROARRAY; GENE EXPRESSION; GENETIC ASSOCIATION; GENETICS; HUMAN; METABOLISM; PROTEIN PROTEIN INTERACTION; SIGNAL TRANSDUCTION; SINGLE NUCLEOTIDE POLYMORPHISM; SLEEP DISORDERED BREATHING; STATISTICS; SYSTEMS BIOLOGY;

ADIPOSE TISSUE; ALGORITHMS; CASE-CONTROL STUDIES; COMPUTATIONAL BIOLOGY; GENE EXPRESSION; GENOME-WIDE ASSOCIATION STUDY; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMORPHISM, SINGLE NUCLEOTIDE; PROTEIN INTERACTION MAPS; SIGNAL TRANSDUCTION; SLEEP APNEA, OBSTRUCTIVE; SYSTEMS BIOLOGY;

EID: 84872928822     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (52)

1. Reite, M., Ruddy, J. & Nagel, K. Concise guide to evaluation and management of sleep disorders. (American Psychiatric Publishing, Inc., 2002).
2. Vgontzas, A. N. & Kales, A. Annu Rev Med 50, 387-400, (1999).
3. Young, T., Peppard, P. E. & Gottlieb, D. J. Am J Respir Crit Care Med 165, 1217-1239 (2002).
4. Arnardottir, E. S., et al. Sleep 32, 447-470 (2009).
5. Waradekar, et al. Am J Respir Crit Care Med 153, 1333-1338 (1996).
6. Donadio, V. et al. J Sleep Res 16, 327-332, (2007).
7. Bravo Mde, L. et al. Sleep Breath 11, 177-185 (2007).
8. Minoguchi, K. et al. Am J Respir Crit Care Med 172, 625-630, (2005).
9. Schulz, R. et al. Am J Respir Crit Care Med 162, 566-570 (2000).
10. Dyugovskaya, L., Lavie, P. & Lavie, L. Am J Respir Crit Care Med 165, 934-939 (2002).
11. Young, T. et al. N Engl J Med 328, 1230-1235 (1993).
12. Ip, M. S. et al. Am J Respir Crit Care Med 165, 670-676 (2002).
13. McNicholas, W. T. & Bonsigore, M. R. Eur Respir J 29, 156-178, (2007).
14. Logan, A. G. et al. Eur Respir J 21, 241-247 (2003).
15. Strohl, K. P., Saunders, N. A., Feldman, N. T. & Hallett, M. N Engl J Med 299, 969-973 (1978).
16. Redline, S. et al. Am J Respir Crit Care Med 151, 682-687 (1995).
17. Riha, R. L. Respiration 78, 5-17, (2009).
18. Larkin, E. K. et al. Ann Hum Genet 72, 762-773,(2008).
19. Larkin, E. K. et al. Am. J. Respir. Crit. Care Med. in press (2010).
20. Nibbe, R. K. et al. Mol Cell Proteomics 8, 827-845, (2009).
21. Musunuru, K. et al. Circ Cardiovasc Genet, in press (2010).
22. Bossi, A. & Lehner, B. Mol Syst Biol 5, 260, (2009).
23. Wang, E. T. et al. Nature 456, 470-476, (2008).
24. Szabo, P. M. et al. Oncogene 29, 3163-3172, (2010).
25. Su, A. I. et al. Proc Natl Acad Sci USA 99, 4465-4470, (2002).
26. Su, A. I. et al. Proc Natl Acad Sci USA 101, 6062-6067, (2004).
27. Assenov, Y. et al. Bioinformatics 24, 282-284, (2008).
28. Bengtsson, H., et al. (Dep. of Statistics, Univ. of California, Berkeley, February 2008).
29. Chuang, H. Y., Lee, E., Liu, Y. T., Lee, D. & Ideker, T. Mol Syst Biol 3, 140, (2007).
30. Wang, K., Li, M. & Bucan, M. Am J Hum Genet 81, (2007).
31. Baranzini, S. E. et al. Hum Mol Genet 18, 2078-2090, (2009).
32. Ideker, T., et al. Bioinformatics 18 Suppl 1, S233-240 (2002).
33. Cline, M. S. et al. Nat Protoc 2, 2366-2382, (2007).
34. Bader, G. D. & Hogue, C. W. BMC Bioinformatics 4, 2 (2003).
35. Maere, S., Heymans, K. & Kuiper, M. Bioinformatics 21, 3448-3449, (2005).
36. Kuwaki, T. et al. Am J Physiol 270, R1279-1286 (1996).
37. Foltenyi, K., Greenspan, R. J. & Newport, J. W. Nat Neurosci 10, 1160-1167, (2007).
38. Alea, O. A. et al. Am J Physiol Regul Integr Comp Physiol 279, R1625-1633 (2000).
39. Vlasic, V., Simakajornboon, N., Gozal, E. & Gozal, D. Pediatr Res 50, 236-241 (2001).
40. Gozal, D. et al. J Neurochem 74, 310-319 (2000).
41. Capatina, C., et al. Endocrine Abstracts 22, P631 (2010).
42. Ryan, S., et al. Biochem Biophys Res Commun 355, 728-733, (2007).
43. Hu, J. Y. et al. Cell Mol Life Sci 67, 321-333, (2010).
44. Kruszynska, Y. T. et al. J Clin Endocrinol Metab 87, 226-234 (2002).
45. Samavati, L. et al. Mol Immunol 46, 1867-1877, (2009).
46. Uetz, P. et al. Nature 403, 623-627, (2000).
47. Ito, T. et al. Proc Natl Acad Sci USA 97, 1143-1147 (2000).
48. Gozal, D. et al. J Neurochem 86, 1545-1552, (2003).
49. Taylor, C. T., et al. Proc Natl Acad Sci USA 97, 12091-12096, (2000).
50. Shaw, J. E., et al. Diabetes Res Clin Pract 81, 2-12, (2008).
51. Chowdhury S.A., Nibbe, R.K., Chance, M.R., Koyuturk, M. Proc. RECOMB, LNCS 6044, 80-95, (2010)
52. Yu, K, et al. Genet Epidemiol. 33(8):700-9, (2009