메뉴 건너뛰기




Volumn 6044 LNBI, Issue , 2010, Pages 80-95

Subnetwork state functions define dysregulated subnetworks in cancer

Author keywords

[No Author keywords available]

Indexed keywords

COLORECTAL CANCER; EFFICIENT ALGORITHM; EXISTING METHOD; EXPRESSION PROFILE; GREEDY ALGORITHMS; GREEDY HEURISTICS; MULTIPLE GENES; OBJECTIVE FUNCTIONS; PROTEIN-PROTEIN INTERACTION NETWORKS; STATE FUNCTIONS; SUB-NETWORK; SUBNETWORKS;

EID: 78650285704     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-12683-3_6     Document Type: Conference Paper
Times cited : (7)

References (36)
  • 3
    • 41649119247 scopus 로고    scopus 로고
    • Protein networks in disease
    • Ideker, T., Sharan, R.: Protein networks in disease. Genome Res. 18(4), 644-652 (2008).
    • (2008) Genome Res. , vol.18 , Issue.4 , pp. 644-652
    • Ideker, T.1    Sharan, R.2
  • 7
    • 20044396570 scopus 로고    scopus 로고
    • Integrative analysis of the cancer transcriptome
    • June
    • Rhodes, D.R., Chinnaiyan, A.M.: Integrative analysis of the cancer transcriptome. Nat. Genet. 37(suppl.) (June 2005).
    • (2005) Nat. Genet. , vol.37 , Issue.SUPPL.
    • Rhodes, D.R.1    Chinnaiyan, A.M.2
  • 8
    • 33646884801 scopus 로고    scopus 로고
    • Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes
    • Franke, L., Bakel, H., Fokkens, L., de Jong, E.D., Egmont-Petersen, M., Wijmenga, C.: Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes. Am. J. Hum. Genet. 78(6), 1011-1025 (2006).
    • (2006) Am. J. Hum. Genet. , vol.78 , Issue.6 , pp. 1011-1025
    • Franke, L.1    Bakel, H.2    Fokkens, L.3    De Jong, E.D.4    Egmont-Petersen, M.5    Wijmenga, C.6
  • 9
    • 59649125020 scopus 로고    scopus 로고
    • A network-based method for predicting diseasecausing genes
    • Karni, S., Soreq, H., Sharan, R.: A network-based method for predicting diseasecausing genes. Journal of Computational Biology 16(2), 181-189 (2009).
    • (2009) Journal of Computational Biology , vol.16 , Issue.2 , pp. 181-189
    • Karni, S.1    Soreq, H.2    Sharan, R.3
  • 11
    • 0000801240 scopus 로고    scopus 로고
    • Discovering regulatory and signalling circuits in molecular interaction networks
    • Ideker, T., Ozier, O., Schwikowski, B., Siegel, A.F.: Discovering regulatory and signalling circuits in molecular interaction networks. In: ISMB, pp. 233-240 (2002).
    • (2002) ISMB , pp. 233-240
    • Ideker, T.1    Ozier, O.2    Schwikowski, B.3    Siegel, A.F.4
  • 12
    • 34548583420 scopus 로고    scopus 로고
    • Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network
    • Guo, Z., Li, Y., Gong, X., Yao, C., Ma, W., Wang, D., Li, Y., Zhu, J., Zhang, M., Yang, D., Wang, J.: Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network. Bioinformatics 23(16), 2121-2128 (2007).
    • (2007) Bioinformatics , vol.23 , Issue.16 , pp. 2121-2128
    • Guo, Z.1    Li, Y.2    Gong, X.3    Yao, C.4    Ma, W.5    Wang, D.6    Li, Y.7    Zhu, J.8    Zhang, M.9    Yang, D.10    Wang, J.11
  • 13
    • 34248593385 scopus 로고    scopus 로고
    • Gene expression network analysis and applications to immunology
    • Nacu, Ş., Critchley-Thorne, R., Lee, P., Holmes, S.: Gene expression network analysis and applications to immunology. Bioinformatics 23(7), 850-858 (2007).
    • (2007) Bioinformatics , vol.23 , Issue.7 , pp. 850-858
    • Nacu, Ş.1    Critchley-Thorne, R.2    Lee, P.3    Holmes, S.4
  • 15
    • 20844450402 scopus 로고    scopus 로고
    • Differential network expression during drug and stress response
    • Cabusora, L., Sutton, E., Fulmer, A., Forst, C.V.: Differential network expression during drug and stress response. Bioinformatics 21(12), 2898-2905 (2005).
    • (2005) Bioinformatics , vol.21 , Issue.12 , pp. 2898-2905
    • Cabusora, L.1    Sutton, E.2    Fulmer, A.3    Forst, C.V.4
  • 16
    • 14544268137 scopus 로고    scopus 로고
    • Uncovering transcriptional regulation of metabolism by using metabolic network topology
    • Patil, K.R., Nielsen, J.: Uncovering transcriptional regulation of metabolism by using metabolic network topology. PNAS 102(8), 2685-2689 (2005).
    • (2005) PNAS , vol.102 , Issue.8 , pp. 2685-2689
    • Patil, K.R.1    Nielsen, J.2
  • 18
    • 84873051678 scopus 로고    scopus 로고
    • Identification of coordinately dysregulated subnetworks in complex phenotypes
    • Chowdhury, S.A., Koyutürk, M.: Identification of coordinately dysregulated subnetworks in complex phenotypes. In: PSB, pp. 133-144 (2010).
    • (2010) PSB , pp. 133-144
    • Chowdhury, S.A.1    Koyutürk, M.2
  • 19
    • 47249120912 scopus 로고    scopus 로고
    • Detecting disease-specific dysregulated pathways via analysis of clinical expression profiles
    • Vingron, M. Wong, L. (eds.), LNCS (LNBI), Springer, Heidelberg
    • Ulitsky, I., Karp, R.M., Shamir, R.: Detecting disease-specific dysregulated pathways via analysis of clinical expression profiles. In: Vingron, M., Wong, L. (eds.) RECOMB 2008. LNCS (LNBI), vol. 4955, pp. 347-359. Springer, Heidelberg (2008).
    • (2008) RECOMB 2008 , vol.4955 , pp. 347-359
    • Ulitsky, I.1    Karp, R.M.2    Shamir, R.3
  • 20
  • 21
    • 66149156998 scopus 로고    scopus 로고
    • Discovery and scoring of protein interaction sub-networks discriminative of late stage human colon cancer
    • Nibbe, R.K., Ewing, R., Myeroff, L., Markowitz, M., Chance, M.: Discovery and scoring of protein interaction sub-networks discriminative of late stage human colon cancer. Mol. Cell Prot. 9(4), 827-845 (2009).
    • (2009) Mol. Cell Prot. , vol.9 , Issue.4 , pp. 827-845
    • Nibbe, R.K.1    Ewing, R.2    Myeroff, L.3    Markowitz, M.4    Chance, M.5
  • 22
    • 76749148657 scopus 로고    scopus 로고
    • An integrative -omics approach to identify functional sub-networks in human colorectal cancer
    • Nibbe, R.K., Koyutürk, M., Chance, M.R.: An integrative -omics approach to identify functional sub-networks in human colorectal cancer. PLoS Comput. Biol. 6(1), e1000639 (2010).
    • (2010) PLoS Comput. Biol. , vol.6 , Issue.1
    • Nibbe, R.K.1    Koyutürk, M.2    Chance, M.R.3
  • 23
    • 33847015674 scopus 로고    scopus 로고
    • Computational analysis of the synergy among multiple interacting genes
    • Anastassiou, D.: Computational analysis of the synergy among multiple interacting genes. Mol. Syst. Biol. 3(83) (2007).
    • (2007) Mol. Syst. Biol. , vol.3 , Issue.83
    • Anastassiou, D.1
  • 24
    • 40149090339 scopus 로고    scopus 로고
    • Identification of gene interactions associated with disease from gene expression data using synergy networks
    • Watkinson, J., Wang, X., Zheng, T., Anastassiou, D.: Identification of gene interactions associated with disease from gene expression data using synergy networks. BMC Systems Biology 2(1) (2008).
    • (2008) BMC Systems Biology , vol.2 , Issue.1
    • Watkinson, J.1    Wang, X.2    Zheng, T.3    Anastassiou, D.4
  • 25
    • 0036898577 scopus 로고    scopus 로고
    • Microarray data normalization and transformation
    • Quackenbush, J.: Microarray data normalization and transformation. Nat. Genet. 32(suppl.), 496-501 (2002).
    • (2002) Nat. Genet. , vol.32 , Issue.SUPPL. , pp. 496-501
    • Quackenbush, J.1
  • 26
    • 0032616683 scopus 로고    scopus 로고
    • Identification of genetic networks from a small number of gene expression patterns under the boolean network model
    • Akutsu, T., Miyano, S., Kuhara, S.: Identification of genetic networks from a small number of gene expression patterns under the boolean network model. In: Pacific Symposium on Biocomputing, pp. 17-28 (1999).
    • (1999) Pacific Symposium on Biocomputing , pp. 17-28
    • Akutsu, T.1    Miyano, S.2    Kuhara, S.3
  • 29
    • 0035999984 scopus 로고    scopus 로고
    • Binary analysis and optimization-based normalization of gene expression data
    • Shmulevich, I., Zhang, W.: Binary analysis and optimization-based normalization of gene expression data. Bioinformatics 18(4), 555-565 (2002).
    • (2002) Bioinformatics , vol.18 , Issue.4 , pp. 555-565
    • Shmulevich, I.1    Zhang, W.2
  • 31
    • 0026902042 scopus 로고
    • An information theoretic approach to rule induction from databases
    • Smyth, P., Goodman, R.M.: An information theoretic approach to rule induction from databases. IEEE Trans. on Knowl. and Data Eng. 4(4), 301-316 (1992).
    • (1992) IEEE Trans. on Knowl. and Data Eng. , vol.4 , Issue.4 , pp. 301-316
    • Smyth, P.1    Goodman, R.M.2
  • 32
    • 60849107267 scopus 로고    scopus 로고
    • The role of cell adhesion molecules in the progression of colorectal cancer and the development of liver metastasis
    • Paschos, K., Canovas, D., Bird, N.: The role of cell adhesion molecules in the progression of colorectal cancer and the development of liver metastasis. Cell Signal 21(5), 665-674 (2009).
    • (2009) Cell Signal , vol.21 , Issue.5 , pp. 665-674
    • Paschos, K.1    Canovas, D.2    Bird, N.3
  • 33
    • 1242292412 scopus 로고    scopus 로고
    • Role of matrix metalloproteinases (mmps) in colorectal cancer
    • Zucker, S., Vacirca, J.: Role of matrix metalloproteinases (mmps) in colorectal cancer. Cancer Metastasis Rev. 23(1-2), 101-117 (2004).
    • (2004) Cancer Metastasis Rev. , vol.23 , Issue.1-2 , pp. 101-117
    • Zucker, S.1    Vacirca, J.2
  • 34
    • 77951254355 scopus 로고    scopus 로고
    • The role of inflammation in the pathogenesis of colorectal cancer
    • McConnell, B., Yang, V.: The role of inflammation in the pathogenesis of colorectal cancer. Curr. Colorectal Cancer Rep. 5(2), 69-74 (2009).
    • (2009) Curr. Colorectal Cancer Rep. , vol.5 , Issue.2 , pp. 69-74
    • McConnell, B.1    Yang, V.2
  • 35
    • 72449176846 scopus 로고    scopus 로고
    • Molecular origins of cancer: Molecular basis of colorectal cancer
    • Markowitz, S., Bertagnolli, M.: Molecular origins of cancer: Molecular basis of colorectal cancer. N. Engl. J. Med. 361(25), 2449-2460 (2009).
    • (2009) N. Engl. J. Med. , vol.361 , Issue.25 , pp. 2449-2460
    • Markowitz, S.1    Bertagnolli, M.2
  • 36
    • 35348997467 scopus 로고    scopus 로고
    • Rock-ii mediates colon cancer invasion via regulation of mmp-2 and mmp-13 at the site of invadopodia as revealed by multiphoton imaging
    • Vishnubhotla, R., Sun, S., Huq, J., Bulic, M., Ramesh, A.: Rock-ii mediates colon cancer invasion via regulation of mmp-2 and mmp-13 at the site of invadopodia as revealed by multiphoton imaging. Laboratory Investigation 87, 1149-1158 (2007).
    • (2007) Laboratory Investigation , vol.87 , pp. 1149-1158
    • Vishnubhotla, R.1    Sun, S.2    Huq, J.3    Bulic, M.4    Ramesh, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.