Genetic diversity and population structure in the rare Algodones sunflower (Helianthus niveus ssp. tephrodes)

Conservation Genetics

Volumn 14, Issue 1, 2013, Pages 31-40

  Mandel, Jennifer R ^a   Milton, Ethan F ^a   Donovan, Lisa A ^a   Knapp, Steven J ^b   Burke, John M ^a  

^a UNIVERSITY OF GEORGIA   (United States)

^b Monsanto Vegetable Seeds   (United States)

Author keywords

Conservation; Endangered species; Genetic diversity; Helianthus; Sunflower

Indexed keywords

ALLELE; COMPARATIVE STUDY; CONSERVATION PLANNING; DROUGHT; ENDANGERED SPECIES; FLOWER; GENETIC VARIATION; GENOTYPE; POPULATION STRUCTURE; RARE SPECIES; SPECIES DIVERSITY; TOLERANCE;

SONORAN DESERT;

HELIANTHUS; HELIANTHUS ANNUUS; HELIANTHUS NIVEUS; HELIANTHUS NIVEUS SUBSP. TEPHRODES;

EID: 84872873333     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-012-0421-3     Document Type: Article

References (63)

1. Arizona Game and Fish Department, AGFD (2005) Helianthusniveus ssp. tephrodes. Unpublished abstract compiled and edited by the Heritage Data Management System, Arizona Game and Fish Department, Phoenix.
2. Baskauf CJ, McCauley DE, Eickmeier WG (1994) Genetic analysis of a rare and a widespread species of Echinacea (Asteraceae). Evolution 48: 180-188.
3. Bouzidi MF, Badaoui S, Cambon F, Vear F, Tourvieille de Labrouhe D, Nicolas Mouzeyar S (2002) Molecular analysis of a major locus for resistance to downy mildew in sunflower with specific PCR-based markers. Theor Appl Genet 104: 592-600.
4. Bowers JE (1996) Seedling emergence on Sonoran Desert dunes. J Arid Environ 33: 63-72.
5. California Natural Discovery Database, CNDDB (2012). http://www. dfg. ca. gov/biogeodata/cnddb.
6. Center for Plant Conservation, CPC (1991) Genetic sampling guidelines for conservation collections of endangered plants. In: Falk DA, Holsinger KE (eds) Genetics and conservation of rare plants. Oxford University Press, New York.
7. Chaves MM, Maroco JP, Pereira JS (2003) Understanding plant responses to drought-from genes to the whole plant. Funct Plant Biol 30: 239-264.
8. Coulon A, Fitzpatrick JW, Bowman R, Stith BM, Makarewich CA, Stenzler LM, Lovette IJ (2008) Congruent population structure inferred from dispersal behaviour and intensive genetic surveys of the threatened Florida scrub-jay (Aphelocoma cœrulescens). Mol Ecol 17: 1685-1701.
9. Crute IA, Pink DAC (1996) Genetics and utilization of pathogen resistance in plants. Plant Cell 8: 1747-1755.
10. DeSalle R, Amato G (2004) The expansion of conservation genetics. Nat Rev Genet 5: 702-712.
11. Earl DA (2011) Structure harvester v0. 6. 1. http://taylor0. biology. ucla. edu/structureHarvester/. Accessed 7 Dec 2011.
12. Ellis JR, Burke JM (2007) EST-SSRs as a resource for population genetic analyses. Heredity 99: 125-132.
13. Ellis JR, Pashley CH, Burke JM, McCauley DE (2006) High genetic diversity in a rare and endangered sunflower as compared to a common congener. Mol Ecol 15: 2345-2355.
14. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14: 2611-2620.
15. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
16. Falk DA (1987) Integrated conservation strategies for endangered plants. Nat Areas J 7: 118-123.
17. Gevaert S (2011) Exploring the potential for adaptive differentiation in the granite outcrop plant, Helianthus porteri. Dissertation, University of Georgia.
18. Gitzendanner MA, Soltis PS (2000) Patterns of genetic variation in rare and widespread plant congeners. Am J Bot 87: 783-792.
19. Hajjar R, Hodgkin T (2007) The use of wild relatives in crop improvement: a survey of developments over the last 20 years. Euphytica 156: 1-13.
20. Hamrick JL, Godt MJW (1989) Allozyme diversity in plant species. In: Brown A, Clegg M, Kahler A, Weir B (eds) Plant population genetics, breeding and genetic resources. Sinauer, Sunderland.
21. Hamrick JL, Godt MJW (1996) Effects of life history traits on genetic diversity in plant species. Philos Trans R Soc Lond B Biol Sci 351: 1291-1298.
22. Hedrick PW (2000) Genetics of populations, 2nd edn. Jones and Bartlett, Boston.
23. Hijmans RJ, Cameron SE, Parra JL, Jones PG, Jarvis A (2005) Very high resolution interpolated climate surfaces for global land areas. Int J Climatol 25: 1965-1978.
24. Holm S (1979) A simple sequentially rejective multiple test procedure. Scand J Stat 6: 65-70.
25. Hurlbert SH (1971) The non-concept of species diversity: a critique and alternative parameters. Ecology 52: 577-586.
26. Jepson WL, Hickman JC (1993) The Jepson manual: higher plants of California. University of California Press, Berkeley.
27. Kalinowski ST (2004) Counting alleles with rarefaction: private alleles and hierarchical sampling designs. Conserv Genet 5: 539-543.
28. Kalinowski ST (2005) HP-Rare: a computer program for performing rarefaction on measures of allelic diversity. Mol Ecol Notes 5: 187-189.
29. Karron JD (1987) A comparison of levels of genetic polymorphism and self-compatibility in geographically restricted and widespread congeners. Evol Ecol 1: 47-58.
30. Karron JD (1991) Patterns of genetic variation and breeding systems in rare plant species. In: Falk DA, Holsinger KE (eds) Genetics and conservation of rare plants. Oxford University Press, New York.
31. Lukenbach RA, Bury RB (1983) Effects of off-road vehicles on the biota of the Algodones Dunes, Imperial County, California. J Appl Ecol 20: 265-286.
32. Mandel JR (2010) Clonal diversity, spatial dynamics, and small genetic population size in the rare sunflower, Helianthus verticillatus. Conserv Genet 11: 2055-2059.
33. Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27: 209-220.
34. McCouch S, Sweeney M, Li J, Jiang H, Thomson M, Septiningsih E, Edwards J, Moncada P, Xiao J, Garris A, Tai T, Martinez C, Tohme J, Sugiono M, McClung A, Yuan L, Ahn S (2007) Through the Genetic Bottleneck: O. rufipogon as a source of trait enhancing alleles for O. sativa. Euphytica 154: 317-339.
35. McGrann AM, McGrann MC, Dial R (2005) Off-highway vehicle impact on Astragalus magdalenae var. Peirsonii, and other critical plant species of the Algodones Dunes, California. Calif Fish Game 91: 61-82.
36. McKay JK, Latta RG (2002) Adaptive population divergence: markers, QTL, and traits. Trends Ecol Evol 17: 285-291.
37. Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583-590.
38. Nevo E, Chen G (2010) Drought and salt tolerances in wild relatives for wheat and barley improvement. Plant Cell Envrion 33: 670-685.
39. Norris RM, Norris KS (1961) Algodones Dunes of Southeastern California. Geol Soc Am Bull 72: 605-619.
40. Nybom H (2004) Comparison of different DNA markers for estimating intraspecific genetic variation in plants. Mol Ecol 13: 1143-1155.
41. Pashley CH, Ellis JR, McCauley DE, Burke JM (2006) EST databases as a source for molecular markers: lessons from Helianthus. J Hered 97: 381-388.
42. Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6: 288-295.
43. Petit RJ, El Mousadik A, Pons O (1998) Identifying populations for conservation on the basis of genetic markers. Conserv Biol 12: 844-855.
44. Primack RB (2002) Essentials of conservation biology, 3rd edn. Sinauer Associates, Sunderland.
45. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-956.
46. Ranker TA (1994) Evolution of high genetic variability in the rare Hawaiian fern Adenophorus periens and implications for conservation management. Biol Conserv 70: 19-24.
47. Reed DH, Frankham R (2001) How closely correlated are molecular and quantitative measures of genetic variation? A meta-analysis. Evolution 55: 1095-1103.
48. Richards CM, Antolin MF, Reilley A, Poole J, Walters C (2007) Capturing genetic diversity of wild populations for ex situ conservation: Texas wild rice (Zizania texana) as a model. Genet Resour Crop Evol 54: 837-848.
49. Rogers CE, Thompson TE, Seiler GJ (1982) Sunflower species of the United States. National Sunflower Association, Fargo.
50. Schuelke M (2000) An economic method for the fluorescent labeling of PCR fragments. Nat Biotechnol 18: 233-234.
51. Seiler GJR, Rieseberg LH (1997) Systematics, origins and germplasm resources of the wild and domesticated sunflower. Sunflower technology and production. American Society of Agronomy, Madison.
52. Smouse PE, Long JC (1992) Matrix correlation analysis in anthropology and genetics. Yearb Phys Anthropol 35: 187-213.
53. Smouse PE, Long JC, Sokal RR (1986) Multiple regression and correlation extensions of the Mantel test of matrix correspondence. Syst Zool 35: 627-632.
54. Sokal RR, Rohlf FJ (1995) Biometry: the principles and practice of statistics in biological research, 3rd edn. WH Freeman and Company, New York.
55. Tanksley SD, McCouch SR (1997) Seed banks and molecular maps: unlocking genetic potential from the wild. Science 277: 1063-1066.
56. Timme R, Simpson BB, Linder CR (2007) High-resolution phylogeny for Helianthus (Asteraceae) using the 18S-26S ribosomal DNA external transcribed spacer. Am J Bot 94: 1837-1852.
57. Turner NC, Begg JE (1981) Plant water relations and adaptation to drought. Plant Soil 58: 97-113.
58. Vogelmann JE, Gastony GJ (1987) Electrophoretic enzyme analysis of North American and eastern Asian populations of Agastache sect. Agastache (Labiatae). Am J Bot 74: 385-393.
59. Willoughby J (2005) Monitoring of special status plant in the Algodones Dune, Imperial County, California: results of 2003 pilot sampling. Bureau of Land Management California State Office, Sacramento.
60. Wills DM, Hester ML, Liu AZ, Burke JM (2005) Chloroplast SSR polymorphisms in the Compositae and the mode of organellar inheritance in Helianthusannuus. Theor Appl Genet 110: 941-947.
61. Wilson JP, Hess DE, Hanna WW (2000) Resistance to Striga hermonthica in wild accessions of the primary gene pool of Pennisetum glaucum. Phytopathol 90: 1169-1172.
62. Wright S (1951) The genetical structure of populations. Annu Eugen 15: 323-354.
63. Young AG, Brown AHD (1996) Comparative population genetic structure of the rare woodland shrub Daviesia suaveolens and its common congener D. mimosoides. Conserv Biol 10: 1220-1228.