메뉴 건너뛰기




Volumn 434, Issue 1, 2013, Pages 1-3

Simple and inexpensive three-step rapid amplification of cDNA 5′ ends using 5′ phosphorylated primers

Author keywords

Linker cloning; Rapid amplification of cDNA ends (RACE); RNA cloning; Tobacco acid pyrophosphatase; Transcriptional initiation site mapping

Indexed keywords

CLONE CELLS; CLONING; MAMMALS; MAPPING; VIRUSES;

EID: 84872863915     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2012.10.031     Document Type: Article
Times cited : (15)

References (20)
  • 1
    • 0037977732 scopus 로고    scopus 로고
    • Amplification of cDNA ends using PCR suppression effect and step-out PCR
    • M.V. Matz, N.O. Alieva, A. Chenchik, and S. Lukyanov Amplification of cDNA ends using PCR suppression effect and step-out PCR Methods Mol. Biol. 221 2003 41 49
    • (2003) Methods Mol. Biol. , vol.221 , pp. 41-49
    • Matz, M.V.1    Alieva, N.O.2    Chenchik, A.3    Lukyanov, S.4
  • 2
    • 0024212067 scopus 로고
    • Rapid production of full-length cDNAs from rare transcripts: Amplification using a single gene-specific oligonucleotide primer
    • M.A. Frohman, M.K. Dush, and G.R. Martin Rapid production of full-length cDNAs from rare transcripts: amplification using a single gene-specific oligonucleotide primer Proc. Natl. Acad. Sci. USA 85 1988 8998 9002
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 8998-9002
    • Frohman, M.A.1    Dush, M.K.2    Martin, G.R.3
  • 4
    • 0028287575 scopus 로고
    • Ligation-mediated amplification of RNA from murine erythroid cells reveals a novel class of beta-globin mRNA with an extended 5′-untranslated region
    • V. Volloch, B. Schweitzer, and S. Rits Ligation-mediated amplification of RNA from murine erythroid cells reveals a novel class of beta-globin mRNA with an extended 5′-untranslated region Nucleic Acids Res. 22 1994 2507 2511
    • (1994) Nucleic Acids Res. , vol.22 , pp. 2507-2511
    • Volloch, V.1    Schweitzer, B.2    Rits, S.3
  • 5
    • 0028213438 scopus 로고
    • Oligo-capping: A simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides
    • K. Maruyama, and S. Sugano Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides Gene 138 1994 171 174
    • (1994) Gene , vol.138 , pp. 171-174
    • Maruyama, K.1    Sugano, S.2
  • 6
    • 0025823481 scopus 로고
    • Sequencing the termini of capped viral RNA by 5′-3′ ligation and PCR
    • C.W. Mandl, F.X. Heinz, E. Puchhammer-Stöckl, and C. Kunz Sequencing the termini of capped viral RNA by 5′-3′ ligation and PCR BioTechniques 10 1991 484 486
    • (1991) BioTechniques , vol.10 , pp. 484-486
    • Mandl, C.W.1    Heinz, F.X.2    Puchhammer-Stöckl, E.3    Kunz, C.4
  • 7
    • 0019519795 scopus 로고
    • Identification of a promoter component involved in positioning the 5′ termini of Simian virus 40 early mRNAs
    • P.K. Ghosh, P. Lebowitz, R.J. Frisque, and Y. Gluzman Identification of a promoter component involved in positioning the 5′ termini of Simian virus 40 early mRNAs Proc. Natl. Acad. Sci. USA 78 1981 100 104
    • (1981) Proc. Natl. Acad. Sci. USA , vol.78 , pp. 100-104
    • Ghosh, P.K.1    Lebowitz, P.2    Frisque, R.J.3    Gluzman, Y.4
  • 8
    • 0019829142 scopus 로고
    • The SV40 early region TATA box is required for accurate in vitro initiation of transcription
    • D.J. Mathis, and P. Chambon The SV40 early region TATA box is required for accurate in vitro initiation of transcription Nature 290 1981 310 315
    • (1981) Nature , vol.290 , pp. 310-315
    • Mathis, D.J.1    Chambon, P.2
  • 9
    • 79954474930 scopus 로고    scopus 로고
    • Dynamic RNA structures in the dengue virus genome
    • N.G. Iglesias, and A.V. Gamarnik Dynamic RNA structures in the dengue virus genome RNA Biol. 8 2011 249 257
    • (2011) RNA Biol. , vol.8 , pp. 249-257
    • Iglesias, N.G.1    Gamarnik, A.V.2
  • 10
    • 33747616695 scopus 로고    scopus 로고
    • Rolling circle amplification-RACE: A method for simultaneous isolation of 5′ and 3′ cDNA ends from amplified cDNA templates
    • A.N. Polidoros, K. Pasentsis, and A.S. Tsaftaris Rolling circle amplification-RACE: a method for simultaneous isolation of 5′ and 3′ cDNA ends from amplified cDNA templates BioTechniques 41 2006 35 40
    • (2006) BioTechniques , vol.41 , pp. 35-40
    • Polidoros, A.N.1    Pasentsis, K.2    Tsaftaris, A.S.3
  • 11
    • 79952362044 scopus 로고    scopus 로고
    • Structural and biochemical studies of the 5′ → 3′ exoribonuclease Xrn1
    • J.H. Chang, S. Xiang, K. Xiang, J.L. Manley, and L. Tong Structural and biochemical studies of the 5′ → 3′ exoribonuclease Xrn1 Nat. Struct. Mol. Biol. 18 2011 270 276
    • (2011) Nat. Struct. Mol. Biol. , vol.18 , pp. 270-276
    • Chang, J.H.1    Xiang, S.2    Xiang, K.3    Manley, J.L.4    Tong, L.5
  • 12
    • 0038325607 scopus 로고    scopus 로고
    • A stable full-length yellow fever virus cDNA clone and the role of conserved RNA elements in flavivirus replication
    • P.J. Bredenbeek, E.A. Kooi, B. Lindenbach, N. Huijkman, C.M. Rice, and W.J. Spaan A stable full-length yellow fever virus cDNA clone and the role of conserved RNA elements in flavivirus replication J. Gen. Virol. 84 2003 1261 1268
    • (2003) J. Gen. Virol. , vol.84 , pp. 1261-1268
    • Bredenbeek, P.J.1    Kooi, E.A.2    Lindenbach, B.3    Huijkman, N.4    Rice, C.M.5    Spaan, W.J.6
  • 13
    • 0028088986 scopus 로고
    • Marked infidelity of human immunodeficiency virus type 1 reverse transcriptase at RNA and DNA template ends
    • P.H. Patel, and B.D. Preston Marked infidelity of human immunodeficiency virus type 1 reverse transcriptase at RNA and DNA template ends Proc. Natl. Acad. Sci. USA 91 1994 549 553
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 549-553
    • Patel, P.H.1    Preston, B.D.2
  • 14
    • 0031039590 scopus 로고    scopus 로고
    • Determination of the site of first strand transfer during Moloney murine leukemia virus reverse transcription and identification of strand transfer-associated reverse transcriptase errors
    • D. Kulpa, R. Topping, and A. Telesnitsky Determination of the site of first strand transfer during Moloney murine leukemia virus reverse transcription and identification of strand transfer-associated reverse transcriptase errors EMBO J. 16 1997 856 865
    • (1997) EMBO J. , vol.16 , pp. 856-865
    • Kulpa, D.1    Topping, R.2    Telesnitsky, A.3
  • 15
    • 0035092560 scopus 로고    scopus 로고
    • Reverse transcriptase adds nontemplated nucleotides to cDNAs during 5′-RACE and primer extension
    • D. Chen, and J.T. Patton Reverse transcriptase adds nontemplated nucleotides to cDNAs during 5′-RACE and primer extension BioTechniques 30 2001 574 582
    • (2001) BioTechniques , vol.30 , pp. 574-582
    • Chen, D.1    Patton, J.T.2
  • 16
    • 11144326722 scopus 로고    scopus 로고
    • Determination of the capped site sequence of mRNA based on the detection of cap-dependent nucleotide addition using an anchor ligation method
    • H. Ohtake, K. Ohtoko, Y. Ishimaru, and S. Kato Determination of the capped site sequence of mRNA based on the detection of cap-dependent nucleotide addition using an anchor ligation method DNA Res. 11 2004 305 309
    • (2004) DNA Res. , vol.11 , pp. 305-309
    • Ohtake, H.1    Ohtoko, K.2    Ishimaru, Y.3    Kato, S.4
  • 17
    • 0029610409 scopus 로고
    • Transcription of the 5′-terminal cap nucleotide by RNA-dependent DNA polymerase: Possible involvement in retroviral reverse transcription
    • V.Z. Volloch, B. Schweitzer, and S. Rits Transcription of the 5′-terminal cap nucleotide by RNA-dependent DNA polymerase: possible involvement in retroviral reverse transcription DNA Cell Biol. 14 1995 991 996
    • (1995) DNA Cell Biol. , vol.14 , pp. 991-996
    • Volloch, V.Z.1    Schweitzer, B.2    Rits, S.3
  • 18
    • 0029812093 scopus 로고    scopus 로고
    • Full-length cDNA cloning and determination of mRNA 5′ and 3′ ends by amplification of adaptor-ligated cDNA
    • A. Chenchik, L. Diachenko, F. Moqadam, V. Tarabykin, S. Lukyanov, and P.D. Siebert Full-length cDNA cloning and determination of mRNA 5′ and 3′ ends by amplification of adaptor-ligated cDNA BioTechniques 21 1996 526 534
    • (1996) BioTechniques , vol.21 , pp. 526-534
    • Chenchik, A.1    Diachenko, L.2    Moqadam, F.3    Tarabykin, V.4    Lukyanov, S.5    Siebert, P.D.6
  • 20
    • 84885838433 scopus 로고    scopus 로고
    • ARF-TSS: An alternative method for identification of transcription start site in bacteria
    • C. Wang, J. Lee, Y. Deng, F. Tao, and L.H. Zhang ARF-TSS: an alternative method for identification of transcription start site in bacteria BioTechniques 2012 1 3
    • (2012) BioTechniques , pp. 1-3
    • Wang, C.1    Lee, J.2    Deng, Y.3    Tao, F.4    Zhang, L.H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.