Systems biology in livestock health and disease

Systems Biology and Livestock Science

Volumn , Issue , 2011, Pages 83-108

  Kirby, Gordon M ^a  

^a UNIVERSITY OF GUELPH   (Canada)

Author keywords

Disease susceptibility; Genetic disease; Host pathogen interactions; Livestock diseases; Molecular diagnostics; Molecular epidemiology; Personalized medicine; Systems biology techniques

Indexed keywords

EID: 84872773391     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9780470963012.ch4     Document Type: Chapter

References (46)

1. Banerjee, P.&Bhunia, A.K. (2009) Mammalian cell-based biosensors for pathogens and toxins. Trends in Biotechnology, 27, 179-188.
2. Borden,E.C.&Raghavan,D. (2010) Personalizing medicine for cancer: the next decade. Nature Reviews Drug Discovery 9, 343-344.
3. Burton, J.L. & Erskine, R.J. (2003) Immunity and mastitis. Some new ideas for an old disease. Veterinary Clinics of North America: Food Animal Practice 19, 1-45.
4. Calvo, K.R., Liotta, L.A., & Petricoin, E.F. (2005) Clinical proteomics: from biomarker discovery and cell signaling profiles to individualized personal therapy. Bioscience Reports 25, 107-125.
5. Coussens, P.M. & Nobis, W. (2002) Bioinformatics and high throughput approach to create genomic resources for the study of bovine immunobiology. Veterinary Immunology and Immunopathology 86, 229-244.
6. Dettmer, K., Aronov, P.A., & Hammock, B.D. (2007) Mass spectrometry-based metabolomics. Mass Spectrometry Reviews 26, 51-78.
7. Downing, G.J. (2009) Policy perspectives on the emerging pathways of personalized medicine. Dialogues in Clinical Neuroscience 11, 377-387.
8. Elrick, M.M., Walgren, J.L., Mitchell, M.D., et al. (2006) Proteomics: recent applications and new technologies. Basic & Clinical Pharmacology & Toxicology 98, 432-441.
9. Feng, X., Du, W., Luo, Q., et al. (2009) Microfluidic chip: next-generation platform for systems biology. Analytica Chimica Acta 650, 83-97.
10. Forrest, H.L. & Webster, R.G. (2010) Perspectives on influenza evolution and the role of research. Animal Health Research Reviews 11, 3-18.
11. Fujii, J., Otsu, K., Zorzato, F., et al. (1991) Identification of a mutation in porcine ryanodine receptor associated with malignant hyperthermia. Science 253, 448-451.
12. Gill, R., Howard, W.H., Leslie, K.E., et al. (1990) Economics of mastitis control. Journal of Dairy Science 73, 3340-3348.
13. Ginsburg, G.S. & Willard, H.F. (2009) Genomic and personalized medicine: foundations and applications. Translational Research 154, 277-287.
14. Goff, J.P. (2006) Major advances in our understanding of nutritional influences on bovine health. Journal of Dairy Science 89, 1292-1301.
15. Green, R.D., Qureshi, M.A., Long, J.A., et al. (2007) Identifying the future needs for long-term USDA efforts in agricultural animal genomics. International Journal of Biological Science 3, 185-191.
16. Griffiths,W.J., Koal,T., Wang,Y., et al. (2010) Targeted metabolomics for biomarker discovery. Angewandte Chemie International Edition 49, 5426-5445.
17. Gronlund, U., Hallen Sandgren, C., & Persson Waller, K. (2005) Haptoglobin and serum amyloid A in milk from dairy cows with chronic sub-clinical mastitis. Veterinary Research 36, 191-198.
18. Guan, Y., Smith, G. J., Webby, R., et al. (2009) Molecular epidemiology of H5N1 avian influenza. Revue Scientific Technology 28, 39-47.
19. Harrill, A.H. & Rusyn, I. (2008) Systems biology and functional genomics approaches for the identification of cellular responses to drug toxicity. Expert Opinion on Drug Metabolism & Toxicology 4, 1379-1389.
20. Hocquette, J.F., Cassar-Malek, I., Scalbert, A., et al. (2009) Contribution of genomics to the understanding of physiological functions. Journal of Physiology & Pharmacology 60(Suppl 3), 5-16.
21. Hoffmann, B., Beer, M., Reid, S.M., et al. (2009) A review of RT-PCR technologies used in veterinary virology and disease control: sensitive and specific diagnosis of five livestock diseases notifiable to the World Organisation for Animal Health. Veterinary Microbiology 139, 1-23.
22. Joshi, V.A. & Kucherlapati, R. (2008) Genetics and genomics in the practice of medicine. Gastroenterology 134, 1284-1288.
23. Klein, J. (2009) Understanding the molecular epidemiology of foot-and-mouth-disease virus. Infection, Genetics and Evolution 9, 153-161.
24. Lescuyer, P., Farina, A., & Hochstrasser, D.F. (2010) Proteomics in clinical chemistry: will it be long? Trends in Biotechnology 28, 225-229.
25. Lescuyer P, Hochstrasser, D.,&Rabilloud, T. (2007) How shall we use the proteomics toolbox for biomarker discovery? Journal of Proteome Research 6, 3371-3376.
26. Mccarthy FM., Bridges, S.M., Wang, N., et al. (2007) AgBase: a unified resource for functional analysis in agriculture. Nucleic Acids Research 35, D599-D603.
27. Mccarthy, F.M., Mahony, T.J., Parcells, M.S., et al. (2009) Understanding animal viruses using the Gene Ontology. Trends in Microbiology 17, 328-335.
28. Nagahata, H. (2004) Bovine leukocyte adhesion deficiency (BLAD): a review. Journal of Veterinary Medical Science 66, 1475-1482.
29. Norouzy, A., Nassiry, M.R., Eftekhari Shahrody, F., et al. (2005) Identification of bovine leucocyte adhesion deficiency (BLAD) carriers in Holstein and Brown Swiss AI bulls in Iran. Genetika 41, 1697-1701.
30. Olde Riekerink, R.G., Barkema, H.W., Kelton, D.F., et al. (2008) Incidence rate of clinical mastitis on Canadian dairy farms. Journal of Dairy Science 91, 1366-1377.
31. Olden, K. (2006) Toxicogenomics-a new systems toxicology approach to understanding of gene-environment interactions. Annals of the New York Acadmy of Sciences 1076, 703-706.
32. Oresic, M. (2009) Metabolomics, a novel tool for studies of nutrition, metabolism and lipid dysfunction. Nutrition, Metabolism and Cardiovascular Diseases 19, 816-824.
33. Peng, X., Chan, E.Y., Li, Y., et al. (2009) Virus-host interactions: from systems biology to translational research. Current Opinion in Microbiology 12, 432-438.
34. Pengyan, W., Yan, R., Zhiru, G., et al. (2008) Inhibition of foot-and-mouth disease virus replication in vitro and in vivo by small interfering RNA. Virology Journal 5, 86.
35. Plummer, P.J. (2007) Molecular diagnostics for the food animal practitioner. Veterinary Clinics of North America: Food Animal Practice 23, 481-501.
36. Pushkarev, D., Neff, N.F., & Quake, S.R. (2009) Single-molecule sequencing of an individual human genome. Nature Biotechnology 27, 847-852.
37. Reeve, R., Blignaut, B., Esterhuysen, J.J., et al. (2010) Sequence-Based Prediction for Vaccine Strain Selection and Identification of Antigenic Variability inFoot-and-Mouth DiseaseVirus. PLoS Computational Biology 6, e1001027.
38. Schilsky, R.L. (2010) Personalized medicine in oncology: the future is now. Nature Reviews Drug Discovery 9, 363-366.
39. Seegers, H., Fourichon, C., & Beaudeau, F. (2003) Production effects related to mastitis and mastitis economics in dairy cattle herds. Veterinary Research 34, 475-491.
40. Sordillo, L.M., Contreras, G.A., & Aitken, S.L. (2009) Metabolic factors affecting the inflammatory response of periparturient dairy cows. Animal Health Research Reviews 10, 53-63.
41. Terregino, C., Toffan, A., Beato, M.S., et al. (2008) Pathogenicity of a QX strain of infectious bronchitis virus in specific pathogen free and commercial broiler chickens, and evaluation of protection induced by a vaccination programme based on the Ma5 and 4/91 serotypes. Avian Patholpgy 37, 487-493.
42. Viguier, C., Arora, S., Gilmartin, N., et al. (2009) Mastitis detection: current trends and future perspectives. Trends in Biotechnology 27, 486-493.
43. Weckwerth, W. (2010) Metabolomics: an integral technique in systems biology. Bioanalysis 2, 829-836.
44. Weston, A.D. & Hood, L. (2004) Systems biology, proteomics, and the future of health care: toward predictive, preventative, and personalized medicine. Journal of Proteome Research 3, 179-196.
45. Witkamp, R.F. (2005) Genomics and systems biology-how relevant are the developments to veterinary pharmacology, toxicology and therapeutics? Journal of Veterinary Pharmacology and Therapeutics 28, 235-245.
46. Zadoks RN. & Schukken, Y.H. (2006) Use of molecular epidemiology in veterinary practice. Veterinary Clinics of North America: Food Animal Practice 22, 229-261.