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Volumn 9, Issue 2, 2013, Pages 105-111

A cyclic form of N 6-threonylcarbamoyladenosine as a widely distributed tRNA hypermodification

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE; ADENOSINE TRIPHOSPHATE; N6 THREONYLCARBAMOYLADENOSINE; OXAZOLONE; TRANSFER RNA; UNCLASSIFIED DRUG; CSDL PROTEIN, E COLI; DRUG DERIVATIVE; ESCHERICHIA COLI PROTEIN; N(6) (N THREONYLCARBONYL)ADENOSINE; N(6)-(N-THREONYLCARBONYL)ADENOSINE; RECOMBINANT PROTEIN; UBIQUITIN PROTEIN LIGASE;

EID: 84872686832     PISSN: 15524450     EISSN: 15524469     Source Type: Journal    
DOI: 10.1038/nchembio.1137     Document Type: Article
Times cited : (142)

References (37)
  • 1
    • 19444374782 scopus 로고    scopus 로고
    • Biosynthesis and function of tRNA wobble modifications
    • (ed. Grosjean, H.) Springer-Verlag, New York
    • Suzuki, T. Biosynthesis and function of tRNA wobble modifications. in Fine-tuning of RNA Functions by Modification and Editing (ed. Grosjean, H.) 24-69 (Springer-Verlag, New York, 2005).
    • (2005) Fine-tuning of RNA Functions by Modification and Editing , pp. 24-69
    • Suzuki, T.1
  • 2
    • 0014561893 scopus 로고
    • Aminoacyl nucleosides. VII. N-(Purin-6-ylcarbamoyl)threonine. A new component of transfer ribonucleic acid
    • Schweizer, M.P., Chheda, G.B., Baczynskyj, L. & Hall, R.H. Aminoacyl nucleosides. VII. N-(Purin-6-ylcarbamoyl)threonine. A new component of transfer ribonucleic acid. Biochemistry 8, 3283-3289 (1969).
    • (1969) Biochemistry , vol.8 , pp. 3283-3289
    • Schweizer, M.P.1    Chheda, G.B.2    Baczynskyj, L.3    Hall, R.H.4
  • 3
    • 84870152928 scopus 로고    scopus 로고
    • Biosynthesis and function of posttranscriptional modifications of transfer RNAs
    • El Yacoubi, B., Bailly, M. & de Crecy-Lagard, V. Biosynthesis and function of posttranscriptional modifications of transfer RNAs. Annu. Rev. Genet. 46, 69-95 (2012).
    • (2012) Annu. Rev. Genet , vol.46 , pp. 1-95
    • El Yacoubi, B.1    Bailly, M.2    De Crecy-Lagard, V.3
  • 4
    • 80052375980 scopus 로고    scopus 로고
    • Deficit of tRNALys modification by Cdkal1 causes the development of type 2 diabetes in mice
    • Wei, F.Y. et al. Deficit of tRNALys modification by Cdkal1 causes the development of type 2 diabetes in mice. J. Clin. Invest. 121, 3598-3608 (2011).
    • (2011) J. Clin. Invest , vol.121 , pp. 1-3608
    • Wei, F.Y.1
  • 5
    • 0028362696 scopus 로고
    • Recognition of the anticodon loop of TrnaIle1 by isoleucyl-transfer-RNA synthetase from Escherichia coli
    • Niimi, T. et al. Recognition of the anticodon loop of TrnaIle1 by isoleucyl-transfer-RNA synthetase from Escherichia coli. Nucleosides Nucleotides 13, 1231-1237 (1994).
    • (1994) Nucleosides Nucleotides , vol.13 , pp. 1231-1237
    • Niimi, T.1
  • 6
    • 0037053384 scopus 로고    scopus 로고
    • Accurate translation of the genetic code depends on tRNA modified nucleosides
    • Yarian, C. et al. Accurate translation of the genetic code depends on tRNA modified nucleosides. J. Biol. Chem. 277, 16391-16395 (2002).
    • (2002) J. Biol. Chem , vol.277 , pp. 16391-16395
    • Yarian, C.1
  • 7
    • 1842686227 scopus 로고    scopus 로고
    • Modified nucleotides in tRNALys and tRNAVal are important for translocation
    • Phelps, S.S., Malkiewicz, A., Agris, P.F. & Joseph, S. Modified nucleotides in tRNALys and tRNAVal are important for translocation. J. Mol. Biol. 338, 439-444 (2004).
    • (2004) J. Mol. Biol , vol.338 , pp. 439-444
    • Phelps, S.S.1    Malkiewicz, A.2    Agris, P.F.3    Joseph, S.4
  • 8
    • 73549090572 scopus 로고    scopus 로고
    • The Sua5 protein is essential for normal translational regulation in yeast
    • Lin, C.A., Ellis, S.R. & True, H.L. The Sua5 protein is essential for normal translational regulation in yeast. Mol. Cell. Biol. 30, 354-363 (2010).
    • (2010) Mol. Cell. Biol , vol.30 , pp. 1-363
    • Lin, C.A.1    Ellis, S.R.2    True, H.L.3
  • 9
    • 0034619418 scopus 로고    scopus 로고
    • Functional anticodon architecture of human tRNALys3 includes disruption of intraloop hydrogen bonding by the naturally occurring amino acid modification, t6A
    • Stuart, J.W. et al. Functional anticodon architecture of human tRNALys3 includes disruption of intraloop hydrogen bonding by the naturally occurring amino acid modification, t6A. Biochemistry 39, 13396-13404 (2000).
    • (2000) Biochemistry , vol.39 , pp. 13396-13404
    • Stuart, J.W.1
  • 10
    • 79955128451 scopus 로고    scopus 로고
    • Hypermodified nucleosides in the anticodon of tRNALys stabilize a canonical U-turn structure
    • Sundaram, M., Durant, P.C. & Davis, D.R. Hypermodified nucleosides in the anticodon of tRNALys stabilize a canonical U-turn structure. Biochemistry 39, 15652 (2000).
    • (2000) Biochemistry , vol.39 , pp. 15652
    • Sundaram, M.1    Durant, P.C.2    Davis, D.R.3
  • 12
    • 0015278178 scopus 로고
    • Minor components in transfer RNA: Their characterization, location, and function
    • Nishimura, S. Minor components in transfer RNA: their characterization, location, and function. Prog. Nucleic Acid Res. Mol. Biol. 12, 49-85 (1972).
    • (1972) Prog. Nucleic Acid Res. Mol. Biol , vol.12 , pp. 49-85
    • Nishimura, S.1
  • 13
    • 0017094185 scopus 로고
    • Structure determination of a modified nucleoside isolated from Escherichia coli transfer ribonucleic-acid-N-[N-[(9-β-D-ribofuranosylpurin- 6-Yl)carbamoyl]threonyl]2-amido-2-hydroxymethylpropane-1,3-diol
    • Kasai, H. et al. Structure determination of a modified nucleoside isolated from Escherichia coli transfer ribonucleic-acid-N-[N-[(9-β-D- ribofuranosylpurin-6-Yl)carbamoyl]threonyl]2-amido-2-hydroxymethylpropane-1, 3-diol. Eur. J. Biochem. 69, 435-444 (1976).
    • (1976) Eur. J. Biochem , vol.69 , pp. 435-444
    • Kasai, H.1
  • 15
    • 0025683270 scopus 로고
    • Preparation and enzymatic hydrolysis of DNA and RNA for mass spectrometry
    • Crain, P.F. Preparation and enzymatic hydrolysis of DNA and RNA for mass spectrometry. Methods Enzymol. 193, 782-790 (1990).
    • (1990) Methods Enzymol , vol.193 , pp. 782-790
    • Crain, P.F.1
  • 16
    • 0039171441 scopus 로고
    • Preparation of ureidonucleosides of the threonine isomers
    • Martin, D. & Schlimme, E. Preparation of ureidonucleosides of the threonine isomers. Z. Naturforsch. C 49, 834-842 (1994).
    • (1994) Z. Naturforsch , vol.C49 , pp. 834-842
    • Martin, D.1    Schlimme, E.2
  • 17
    • 0343282836 scopus 로고
    • The modified nucleosides of tRNAs I. Synthesis and spectra of some natural ureidonucleosides
    • Adamiak, R.W. & Wiewiorowski, M. The modified nucleosides of tRNAs. I. Synthesis and spectra of some natural ureidonucleosides. Bull. Acad Pol. Sci., Ser. Sci. Chim. 23, 241-253 (1975).
    • (1975) Bull. Acad Pol. Sci., Ser. Sci. Chim , vol.23 , pp. 241-253
    • Adamiak, R.W.1    Wiewiorowski, M.2
  • 18
    • 82755184101 scopus 로고    scopus 로고
    • 3-(3-amino-3-carboxypropyl)-5,6-dihydrouridine is one of two novel post-transcriptional modifications in tRNALys(UUU) from Trypanosoma brucei
    • Krog, J.S. et al. 3-(3-amino-3-carboxypropyl)-5,6-dihydrouridine is one of two novel post-transcriptional modifications in tRNALys(UUU) from Trypanosoma brucei. FEBS J. 278, 4782-4796 (2011).
    • (2011) FEBS J , vol.278 , pp. 1-4796
    • Krog, J.S.1
  • 19
    • 84861898310 scopus 로고    scopus 로고
    • IMG: The Integrated Microbial Genomes database and comparative analysis system
    • Markowitz, V.M. et al. IMG: the Integrated Microbial Genomes database and comparative analysis system. Nucleic Acids Res. 40, D115-D122 (2012).
    • (2012) Nucleic Acids Res , vol.40
    • Markowitz, V.M.1
  • 20
    • 29544452864 scopus 로고    scopus 로고
    • Mechanistic insights into sulfur relay by multiple sulfur mediators involved in thiouridine biosynthesis at tRNA wobble positions
    • Ikeuchi, Y., Shigi, N., Kato, J., Nishimura, A. & Suzuki, T. Mechanistic insights into sulfur relay by multiple sulfur mediators involved in thiouridine biosynthesis at tRNA wobble positions. Mol. Cell 21, 97-108 (2006).
    • (2006) Mol. Cell , vol.21 , pp. 97-108
    • Ikeuchi, Y.1    Shigi, N.2    Kato, J.3    Nishimura, A.4    Suzuki, T.5
  • 21
    • 72049124821 scopus 로고    scopus 로고
    • The CsdA cysteine desulphurase promotes Fe/S biogenesis by recruiting Suf components and participates to a new sulphur transfer pathway by recruiting CsdL (ex-YgdL), a ubiquitin-modifying-like protein
    • Trotter, V. et al. The CsdA cysteine desulphurase promotes Fe/S biogenesis by recruiting Suf components and participates to a new sulphur transfer pathway by recruiting CsdL (ex-YgdL), a ubiquitin-modifying-like protein. Mol. Microbiol. 74, 1527-1542 (2009).
    • (2009) Mol. Microbiol , vol.74 , pp. 1527-1542
    • Trotter, V.1
  • 22
    • 77957342954 scopus 로고    scopus 로고
    • Proteomic analysis of protein-protein interactions within the cysteine sulfinate desulfinase Fe-S cluster biogenesis system
    • Bolstad, H.M., Botelho, D.J. & Wood, M.J. Proteomic analysis of protein-protein interactions within the cysteine sulfinate desulfinase Fe-S cluster biogenesis system. J. Proteome Res. 9, 5358-5369 (2010).
    • (2010) J. Proteome Res , vol.9 , pp. 1-5369
    • Bolstad, H.M.1    Botelho, D.J.2    Wood, M.J.3
  • 23
    • 33845895536 scopus 로고    scopus 로고
    • The frequency of translational misreading errors in E. coli is largely determined by tRNA competition
    • Kramer, E.B. & Farabaugh, P.J. The frequency of translational misreading errors in E. coli is largely determined by tRNA competition. RNA 13, 87-96 (2007).
    • (2007) RNA , vol.13 , pp. 87-96
    • Kramer, E.B.1    Farabaugh, P.J.2
  • 24
    • 0016261534 scopus 로고
    • Conformation and possible role of hypermodified nucleosides adjacent to 3′-end of anticodon in tRNA: N-(purin-6-ylcarbamoyl)-L-threonine riboside
    • Parthasarathy, R., Ohrt, J.M. & Chheda, G.B. Conformation and possible role of hypermodified nucleosides adjacent to 3′-end of anticodon in tRNA: N-(purin-6-ylcarbamoyl)-L-threonine riboside. Biochem. Biophys. Res. Commun. 60, 211-218 (1974).
    • (1974) Biochem. Biophys. Res. Commun , vol.60 , pp. 211-218
    • Parthasarathy, R.1    Ohrt, J.M.2    Chheda, G.B.3
  • 25
    • 0016174519 scopus 로고
    • The enzymatic synthesis of N-(purin-6-ylcarbamoyl)threonine, an anticodon-adjacent base in transfer ribonucleic acid
    • Elkins, B.N. & Keller, E.B. The enzymatic synthesis of N-(purin-6-ylcarbamoyl)threonine, an anticodon-adjacent base in transfer ribonucleic acid. Biochemistry 13, 4622-4628 (1974).
    • (1974) Biochemistry , vol.13 , pp. 4622-4628
    • Elkins, B.N.1    Keller, E.B.2
  • 26
    • 66249095330 scopus 로고    scopus 로고
    • The universal YrdC/Sua5 family is required for the formation of threonylcarbamoyladenosine in tRNA
    • El Yacoubi, B. et al. The universal YrdC/Sua5 family is required for the formation of threonylcarbamoyladenosine in tRNA. Nucleic Acids Res. 37, 2894-2909 (2009).
    • (2009) Nucleic Acids Res , vol.37 , pp. 2894-2909
    • El Yacoubi, B.1
  • 27
    • 79952281325 scopus 로고    scopus 로고
    • A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification
    • El Yacoubi, B. et al. A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification. EMBO J. 30, 882-893 (2011).
    • (2011) EMBO J , vol.30 , pp. 1-893
    • El Yacoubi, B.1
  • 28
    • 79952280840 scopus 로고    scopus 로고
    • The highly conserved KEOPS/EKC complex is essential for a universal tRNA modification, t6A
    • Srinivasan, M. et al. The highly conserved KEOPS/EKC complex is essential for a universal tRNA modification, t6A. EMBO J. 30, 873-881 (2011).
    • (2011) EMBO J , vol.30 , pp. 1-881
    • Srinivasan, M.1
  • 29
    • 80055044856 scopus 로고    scopus 로고
    • Effects on transcription of mutations in ygjD, yeaZ, and yjeE genes, which are involved in a universal tRNA modification in Escherichia coli
    • Hashimoto, C. et al. Effects on transcription of mutations in ygjD, yeaZ, and yjeE genes, which are involved in a universal tRNA modification in Escherichia coli. J. Bacteriol. 193, 6075-6079 (2011).
    • (2011) J. Bacteriol , vol.193 , pp. 1-6079
    • Hashimoto, C.1
  • 30
    • 34047143747 scopus 로고    scopus 로고
    • Automated parallel isolation of multiple species of non-coding RNAs by the reciprocal circulating chromatography method
    • Miyauchi, K., Ohara, T. & Suzuki, T. Automated parallel isolation of multiple species of non-coding RNAs by the reciprocal circulating chromatography method. Nucleic Acids Res. 35, e24 (2007).
    • (2007) Nucleic Acids Res , vol.35
    • Miyauchi, K.1    Ohara, T.2    Suzuki, T.3
  • 31
    • 34548789633 scopus 로고    scopus 로고
    • Mass spectrometric identification and characterization of RNA-modifying enzymes
    • Suzuki, T., Ikeuchi, Y., Noma, A., Suzuki, T. & Sakaguchi, Y. Mass spectrometric identification and characterization of RNA-modifying enzymes. Methods Enzymol. 425, 211-229 (2007).
    • (2007) Methods Enzymol , vol.425 , pp. 211-229
    • Suzuki, T.1    Ikeuchi, Y.2    Noma, A.3    Suzuki, T.4    Sakaguchi, Y.5
  • 32
    • 77949820848 scopus 로고    scopus 로고
    • Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea
    • Ikeuchi, Y. et al. Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea. Nat. Chem. Biol. 6, 277-282 (2010).
    • (2010) Nat. Chem. Biol , vol.6 , pp. 1-282
    • Ikeuchi, Y.1
  • 33
    • 0017875666 scopus 로고
    • The chemical synthesis of the anticodon loop of an eukaryotic initiator tRNA containing the hypermodified nucleoside N6-/N-threonylcarbonyl/-adenosine/ t6A/1
    • Adamiak, R.W. et al. The chemical synthesis of the anticodon loop of an eukaryotic initiator tRNA containing the hypermodified nucleoside N6-/N-threonylcarbonyl/-adenosine/t6A/1. Nucleic Acids Res. 5, 1889-1905 (1978).
    • (1978) Nucleic Acids Res , vol.5 , pp. 1889-1905
    • Adamiak, R.W.1
  • 34
    • 31544450286 scopus 로고    scopus 로고
    • Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection
    • Baba, T. et al. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2, 2006.0008 (2006).
    • (2006) Mol. Syst. Biol , vol.2 , Issue.2006 , pp. 0008
    • Baba, T.1
  • 35
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • USA
    • Datsenko, K.A. & Wanner, B.L. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. USA 97, 6640-6645 (2000).
    • (2000) Proc. Natl. Acad. Sci , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 36
    • 77950361036 scopus 로고    scopus 로고
    • Fine-tuning of the ribosomal decoding center by conserved methyl-modifications in the Escherichia coli 16S rRNA
    • Kimura, S. & Suzuki, T. Fine-tuning of the ribosomal decoding center by conserved methyl-modifications in the Escherichia coli 16S rRNA. Nucleic Acids Res. 38, 1341-1352 (2010).
    • (2010) Nucleic Acids Res , vol.38 , pp. 1-1352
    • Kimura, S.1    Suzuki, T.2
  • 37
    • 33845958586 scopus 로고    scopus 로고
    • The A-site finger in 23 S rRNA acts as a functional attenuator for translocation
    • Komoda, T. et al. The A-site finger in 23 S rRNA acts as a functional attenuator for translocation. J. Biol. Chem. 281, 32303-32309 (2006).
    • (2006) J. Biol. Chem , vol.281 , pp. 32303-32309
    • Komoda, T.1


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