Distinct tissue expression profiles of chicken Lpin1-α/β isoforms and the effect of the variation on muscle fiber traits

Gene

Volumn 515, Issue 2, 2013, Pages 281-290

  Li, Suya ^a   Chen, Wen ^a   Kang, Xiangtao ^a   Han, Ruili ^a   Sun, Guirong ^a   Huang, Yanqun ^a  

^a HENAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

5' Flanking region; Chicken; Gene expression; Genetic variation; Lpin1 ; Muscle development

Indexed keywords

LPIN1 ALPHA; LPIN1 BETA; MESSENGER RNA; MYOD PROTEIN; PROTEIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BINDING SITE; CHICKEN; CONTROLLED STUDY; ENERGY; FEMALE; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE STRUCTURE; GENETIC TRAIT; GENETIC VARIABILITY; MUSCLE CELL; NONHUMAN; POSTNATAL DEVELOPMENT; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; SINGLE NUCLEOTIDE POLYMORPHISM; TISSUE LEVEL;

5' FLANKING REGION; AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CALORIC RESTRICTION; CHICKENS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, ENZYMOLOGIC; HAPLOTYPES; LIPID METABOLISM; LIVER; MOLECULAR SEQUENCE DATA; MUSCLE FIBERS, SKELETAL; MUSCLE, SKELETAL; ORGAN SPECIFICITY; PHENOTYPE; PHOSPHATIDATE PHOSPHATASE; POLYMORPHISM, GENETIC; PROTEIN ISOFORMS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EID: 84872486636     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2012.11.075     Document Type: Article

References (46)

1. Bou Khalil M., et al. The level and compartmentalization of phosphatidate phosphatase-1 (lipin-1) control the assembly and secretion of hepatic VLDL. J. Lipid Res. 2009, 50:47-58.
2. Bustin S. Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems. J. Mol. Endocrinol. 2002, 29:23-29.
3. Chen W., Guo Y.M., Huang Y.Q., Shi Y.H., Zhang C.X., Wang J.W. Effect of energy restriction on growth, slaughter performance, serum biochemical parameters and Lpin2/WDTC1 mRNA expression of broilers in the later phase. J. Poult. Sci. 2012, 49:12-19.
4. Croce M.A., Eagon J.C., LaRiviere L.L., Korenblat K.M., Klein S., Finck B.N. Hepatic lipin 1beta expression is diminished in insulin-resistant obese subjects and is reactivated by marked weight loss. Diabetes 2007, 56:2395-2399.
5. Donkor J., Sariahmetoglu M., Dewald J., Brindley D.N., Reue K. Three mammalian lipins act as phosphatidate phosphatases with distinct tissue expression patterns. J. Biol. Chem. 2007, 282:3450-3457.
6. Douglas D.S., et al. Concurrent Lpin1 and Nrcam mouse mutations result in severe peripheral neuropathy with transitory hindlimb paralysis. J. Neurosci. 2009, 29:12089-12100.
7. Finck B.N., et al. Lipin 1 is an inducible amplifier of the hepatic PGC-1alpha/PPARalpha regulatory pathway. Cell Metab. 2006, 4:199-210.
8. Gangisetty O., Reddy D.S. The optimization of TaqMan real-time RT-PCR assay for transcriptional profiling of GABA-A receptor subunit plasticity. J. Neurosci. Methods 2009, 181:58-66.
9. Gowri P.M., Sengupta S., Bertera S., Katzenellenbogen B.S. Lipin1 regulation by estrogen in uterus and liver: implications for diabetes and fertility. Endocrinology 2007, 148:3685-3693.
10. Han G.S., Carman G.M. Characterization of the human LPIN1-encoded phosphatidate phosphatase isoforms. J. Biol. Chem. 2010, 285:14628-14638.
11. Han R.L., et al. A novel single-nucleotide polymorphism of the visfatin gene and its associations with performance traits in the chicken. J. Appl. Genet. 2010, 51:59-65.
12. Han R.L., et al. Novel 9-bp indel in visfatin gene and its associations with chicken growth. Br. Poult. Sci. 2011, 52:52-57.
13. Han R., et al. Novel SNPs in the PRDM16 gene and their associations with performance traits in chickens. Mol. Biol. Rep. 2012, 39:3153-3160.
14. Jiang Z., et al. A novel type of sequence variation: multiple-nucleotide length polymorphisms discovered in the bovine genome. Genetics 2007, 176:403-407.
15. Katewa S.D., Kapahi P. Dietary restriction and aging, 2009. Aging Cell 2010, 9:105-112.
16. Khalil M.B., Blais A., Figeys D., Yao Z. Lipin-the bridge between hepatic glycerolipid biosynthesis and lipoprotein metabolism. Biochimica et Biophysica Acta (BBA)-Molecular and Cell Biology of. Lipids 2010, 1801:1249-1259.
17. Langner C., Birkenmeier E., Roth K., Bronson R., Gordon J. Characterization of the peripheral neuropathy in neonatal and adult mice that are homozygous for the fatty liver dystrophy (fld) mutation. J. Biol. Chem. 1991, 266:11955-11964.
18. Lindegaard B., Larsen L.F., Hansen A.B., Gerstoft J., Pedersen B.K., Reue K. Adipose tissue lipin expression levels distinguish HIV patients with and without lipodystrophy. Int. J. Obes. (Lond.) 2007, 31:449-456.
19. Liu B.H. Statistical Genomics: Linkage, Mapping, and QTL Analysis 1998, CRC Press, Boca Raton.
20. Liu G.H., Gerace L. Sumoylation regulates nuclear localization of lipin-1alpha in neuronal cells. PLoS One 2009, 4:e7031.
21. Liu G.H., et al. Lipin proteins form homo- and hetero-oligomers. Biochem. J. 2010, 432:65-76.
22. Lkhagvadorj S., et al. Gene expression profiling of the short-term adaptive response to acute caloric restriction in liver and adipose tissues of pigs differing in feed efficiency. Am. J. Physiol. Regul. Integr. Comp. Physiol. 2010, 298:R494-R507.
23. Loos R.J., Rankinen T., Perusse L., Tremblay A., Despres J.P., Bouchard C. Association of lipin 1 gene polymorphisms with measures of energy and glucose metabolism. Obesity (Silver Spring) 2007, 15:2723-2732.
24. Martin P.G.P., et al. Novel aspects of PPARα-mediated regulation of lipid and xenobiotic metabolism revealed through a nutrigenomic study. Hepatology 2007, 45:767-777.
25. Micheli L., et al. PC4/Tis7/IFRD1 stimulates skeletal muscle regeneration and is involved in myoblast differentiation as a regulator of MyoD and NF-kappaB. J. Biol. Chem. 2011, 286:5691-5707.
26. Michot C., et al. LPIN1 gene mutations: a major cause of severe rhabdomyolysis in early childhood. Hum. Mutat. 2010, 31:E1564-E1573.
27. Miranda M., et al. Lpin1 in human visceral and subcutaneous adipose tissue: similar levels but different associations with lipogenic and lipolytic genes. Am. J. Physiol. Endocrinol. Metab. 2010, 299:E308-E317.
28. Peterfy M., Phan J., Oswell G.M., Xu P., Reue K. Genetic, physical, and transcript map of the fld region on mouse chromosome 12. Genomics 1999, 62:436-444.
29. Peterfy M., Phan J., Xu P., Reue K. Lipodystrophy in the fld mouse results from mutation of a new gene encoding a nuclear protein, lipin. Nat. Genet. 2001, 27:121-124.
30. Peterfy M., Phan J., Reue K. Alternatively spliced lipin isoforms exhibit distinct expression pattern, subcellular localization, and role in adipogenesis. J. Biol. Chem. 2005, 280:32883-32889.
31. Phan J., Reue K. Lipin, a lipodystrophy and obesity gene. Cell Metab. 2005, 1:73-83.
32. Phan J., Peterfy M., Reue K. Lipin expression preceding peroxisome proliferator-activated receptor-gamma is critical for adipogenesis in vivo and in vitro. J. Biol. Chem. 2004, 279:29558-29564.
33. Pihlajamäki J., et al. Expression of the splicing factor gene SFRS10 is reduced in human obesity and contributes to enhanced lipogenesis. Cell Metab. 2011, 14:208-218.
34. Reitman M.L. The fat and thin of lipin. Cell Metab. 2005, 1:5-6.
35. Reue K., Doolittle M. Naturally occurring mutations in mice affecting lipid transport and metabolism. J. Lipid Res. 1996, 37:1387-1405.
36. Reue K., Dwyer J.R. Lipin proteins and metabolic homeostasis. J. Lipid Res. 2009, 50:S109-S114. (Suppl.).
37. Reue K., Xu P., Wang X.P., Slavin B.G. Adipose tissue deficiency, glucose intolerance, and increased atherosclerosis result from mutation in the mouse fatty liver dystrophy (fld) gene. J. Lipid Res. 2000, 41:1067-1076.
38. Reue K., Zhang P. The lipin protein family: dual roles in lipid biosynthesis and gene expression. FEBS Lett. 2008, 582:90-96.
39. Stephens M., Donnelly P. A comparison of bayesian methods for haplotype reconstruction from population genotype data. Am. J. Hum. Genet. 2003, 73:1162-1169.
40. Suviolahti E., et al. Cross-species analyses implicate lipin 1 involvement in human glucose metabolism. Hum. Mol. Genet. 2006, 15:377-386.
41. van Harmelen V., Rydén M., Sjölin E., Hoffstedt J. A role of lipin in human obesity and insulin resistance: relation to adipocyte glucose transport and GLUT4 expression. J. Lipid Res. 2007, 48:201-206.
42. Wang E.T., et al. Alternative isoform regulation in human tissue transcriptomes. Nature 2008, 456:470-476.
43. Wang J.W., Chen W., Kang X.T., Huang Y.Q., Tian Y.D., Wang Y.B. Identification of differentially expressed genes induced by energy restriction using annealing control primer system from the liver and adipose tissues of broilers. Poult. Sci. 2012, 91:972-978.
44. Wang X.K., Chen W., Huang Y.Q., Kang X.T., Wang J.P. Identification of the transcript isoforms and expression characteristics for chicken Lpin1. Animal 2012, 10.1017/S1751731112001358.
45. Yao-Borengasser A., et al. Lipin expression is attenuated in adipose tissue of insulin-resistant human subjects and increases with peroxisome proliferator-activated receptor gamma activation. Diabetes 2006, 55:2811-2818.
46. Zeharia A., et al. Mutations in LPIN1 cause recurrent acute myoglobinuria in childhood. Am. J. Hum. Genet. 2008, 83:489-494.