Comparative Functional Analysis of ZFP36 Genes during Xenopus Development

PLoS ONE

Volumn 8, Issue 1, 2013, Pages

  Tréguer, Karine ^a,b,c   Faucheux, Corinne ^a,b   Veschambre, Philippe ^a,b   Fédou, Sandrine ^a,b   Thézé, Nadine ^a,b   Thiébaud, Pierre ^a,b  

^a UNIVERSITÉ DE BORDEAUX   (France)

^b CNRS Bordeaux Segalen University   (France)

^c University Hospital of Toulouse   (France)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; NOTCH RECEPTOR; OLIGONUCLEOTIDE; TRISTETRAPROLIN;

AMPHIBIA; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; DOWN REGULATION; EMBRYO; EMBRYO DEVELOPMENT; GAIN OF FUNCTION MUTATION; GENE FUNCTION; GENE OVEREXPRESSION; GENE STRUCTURE; GENETIC ANALYSIS; GENETIC CONSERVATION; HUMAN; HUMAN TISSUE; KIDNEY DEVELOPMENT; KIDNEY TUBULE; LOSS OF FUNCTION MUTATION; MAMMAL; NONHUMAN; PHENOTYPE; PRONEPHROS; PROTEIN FUNCTION; PROTEIN TARGETING; SIGNAL TRANSDUCTION; SOMITE; XENOPUS; ZFP36 GENE;

ANIMALS; EMBRYO, NONMAMMALIAN; GENE EXPRESSION REGULATION, DEVELOPMENTAL; XENOPUS; XENOPUS PROTEINS;

AMPHIBIA; MAMMALIA; VERTEBRATA;

EID: 84872438097     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0054550     Document Type: Article

References (64)

1. Krishna SS, Majumdar I, Grishin NV, (2003) Structural classification of zinc fingers: survey and summary. Nucleic Acids Res 31: 532-550.
2. Liang J, Song W, Tromp G, Kolattukudy PE, Fu M, (2008) Genome-wide survey and expression profiling of CCCH-zinc finger family reveals a functional module in macrophage activation. PLoS One 3: e2880.
3. DuBois RN, McLane MW, Ryder K, Lau LF, Nathans D, (1990) A growth factor-inducible nuclear protein with a novel cysteine/histidine repetitive sequence. J Biol Chem 265: 19185-19191.
4. Heximer SP, Forsdyke DR, (1993) A human putative lymphocyte G0/G1 switch gene homologous to a rodent gene encoding a zinc-binding potential transcription factor. DNA Cell Biol 12: 73-88.
5. Lai WS, Stumpo DJ, Blackshear PJ, (1990) Rapid insulin-stimulated accumulation of an mRNA encoding a proline-rich protein. J Biol Chem 265: 16556-16563.
6. Varnum BC, Lim RW, Sukhatme VP, Herschman HR, (1989) Nucleotide sequence of a cDNA encoding TIS11, a message induced in Swiss 3T3 cells by the tumor promoter tetradecanoyl phorbol acetate. Oncogene 4: 119-120.
7. Blackshear PJ, (2002) Tristetraprolin and other CCCH tandem zinc-finger proteins in the regulation of mRNA turnover. Biochem Soc Trans 30: 945-952.
8. Blackshear PJ, Phillips RS, Ghosh S, Ramos SB, Richfield EK, et al. (2005) Zfp36l3, a rodent X chromosome gene encoding a placenta-specific member of the Tristetraprolin family of CCCH tandem zinc finger proteins. Biol Reprod 73: 297-307.
9. Lai WS, Carballo E, Thorn JM, Kennington EA, Blackshear PJ, (2000) Interactions of CCCH zinc finger proteins with mRNA. Binding of tristetraprolin-related zinc finger proteins to Au-rich elements and destabilization of mRNA. J Biol Chem 275: 17827-17837.
10. Lai WS, Kennington EA, Blackshear PJ, (2002) Interactions of CCCH zinc finger proteins with mRNA: non-binding tristetraprolin mutants exert an inhibitory effect on degradation of AU-rich element-containing mRNAs. J Biol Chem 277: 9606-9613.
11. Hudson BP, Martinez-Yamout MA, Dyson HJ, Wright PE, (2004) Recognition of the mRNA AU-rich element by the zinc finger domain of TIS11d. Nat Struct Mol Biol 11: 257-264.
12. Michel SL, Guerrerio AL, Berg JM, (2003) Selective RNA binding by a single CCCH zinc-binding domain from Nup475 (Tristetraprolin). Biochemistry 42: 4626-4630.
13. Baou M, Jewell A, Murphy JJ, (2009) TIS11 family proteins and their roles in posttranscriptional gene regulation. J Biomed Biotechnol 2009: 634520.
14. Taylor GA, Carballo E, Lee DM, Lai WS, Thompson MJ, et al. (1996) A pathogenetic role for TNF alpha in the syndrome of cachexia, arthritis, and autoimmunity resulting from tristetraprolin (TTP) deficiency. Immunity 4: 445-454.
15. Bell SE, Sanchez MJ, Spasic-Boskovic O, Santalucia T, Gambardella L, et al. (2006) The RNA binding protein Zfp36l1 is required for normal vascularisation and post-transcriptionally regulates VEGF expression. Dev Dyn 235: 3144-3155.
16. Stumpo DJ, Byrd NA, Phillips RS, Ghosh S, Maronpot RR, et al. (2004) Chorioallantoic fusion defects and embryonic lethality resulting from disruption of Zfp36L1, a gene encoding a CCCH tandem zinc finger protein of the Tristetraprolin family. Mol Cell Biol 24: 6445-6455.
17. Ramos SB, Stumpo DJ, Kennington EA, Phillips RS, Bock CB, et al. (2004) The CCCH tandem zinc-finger protein Zfp36l2 is crucial for female fertility and early embryonic development. Development 131: 4883-4893.
18. Hodson DJ, Janas ML, Galloway A, Bell SE, Andrews S, et al. (2010) Deletion of the RNA-binding proteins ZFP36L1 and ZFP36L2 leads to perturbed thymic development and T lymphoblastic leukemia. Nat Immunol 11: 717-724.
19. Chan XY, Lambert JD, (2011) Patterning a spiralian embryo: a segregated RNA for a Tis11 ortholog is required in the 3a and 3b cells of the Ilyanassa embryo. Dev Biol 349: 102-112.
20. Ma Q, Wadleigh D, Chi T, Herschman H, (1994) The Drosophila TIS11 homologue encodes a developmentally controlled gene. Oncogene 9: 3329-3334.
21. Stevens CJ, Schipper H, Samallo J, Stroband HW, te Kronnie T, (1998) Blastomeres and cells with mesendodermal fates of carp embryos express cth1, a member of the TIS11 family of primary response genes. Int J Dev Biol 42: 181-188.
22. te Kronnie G, Stroband H, Schipper H, Samallo J, (1999) Zebrafish CTH1, a C3H zinc finger protein, is expressed in ovarian oocytes and embryos. Dev Genes Evol 209: 443-446.
23. Thompson MJ, Lai WS, Taylor GA, Blackshear PJ, (1996) Cloning and characterization of two yeast genes encoding members of the CCCH class of zinc finger proteins: zinc finger-mediated impairment of cell growth. Gene 174: 225-233.
24. De J, Lai WS, Thorn JM, Goldsworthy SM, Liu X, et al. (1999) Identification of four CCCH zinc finger proteins in Xenopus, including a novel vertebrate protein with four zinc fingers and severely restricted expression. Gene 228: 133-145.
25. Kaneko T, Chan T, Satow R, Fujita T, Asashima M, (2003) The isolation and characterization of XC3H-3b: a CCCH zinc-finger protein required for pronephros development. Biochem Biophys Res Commun 308: 566-572.
26. Belloc E, Mendez R, (2008) A deadenylation negative feedback mechanism governs meiotic metaphase arrest. Nature 452: 1017-1021.
27. Dudziak K, Mottalebi N, Senkel S, Edghill EL, Rosengarten S, et al. (2008) Transcription factor HNF1beta and novel partners affect nephrogenesis. Kidney Int 74: 210-217.
28. Blomme T, Vandepoele K, De Bodt S, Simillion C, Maere S, et al. (2006) The gain and loss of genes during 600 million years of vertebrate evolution. Genome Biol 7: R43.
29. Heasman J, (2006) Patterning the early Xenopus embryo. Development 133: 1205-1217.
30. Smith JC, Watt FM, (1985) Biochemical specificity of Xenopus notochord. Differentiation 29: 109-115.
31. Jen WC, Wettstein D, Turner D, Chitnis A, Kintner C, (1997) The Notch ligand, X-Delta-2, mediates segmentation of the paraxial mesoderm in Xenopus embryos. Development 124: 1169-1178.
32. Jen WC, Gawantka V, Pollet N, Niehrs C, Kintner C, (1999) Periodic repression of Notch pathway genes governs the segmentation of Xenopus embryos. Genes Dev 13: 1486-1499.
33. Vize PD, Jones EA, Pfister R, (1995) Development of the Xenopus pronephric system. Dev Biol 171: 531-540.
34. Carroll TJ, Vize PD, (1999) Synergism between Pax-8 and lim-1 in embryonic kidney development. Dev Biol 214: 46-59.
35. Chan TC, Takahashi S, Asashima M, (2000) A role for Xlim-1 in pronephros development in Xenopus laevis. Dev Biol 228: 256-269.
36. Haldin CE, Masse KL, Bhamra S, Simrick S, Kyuno J, et al. (2008) The lmx1b gene is pivotal in glomus development in Xenopus laevis. Dev Biol 322: 74-85.
37. Leclerc C, Webb SE, Miller AL, Moreau M, (2008) An increase in intracellular Ca2+ is involved in pronephric tubule differentiation in the amphibian Xenopus laevis. Dev Biol 321: 357-367.
38. Sato A, Asashima M, Yokota T, Nishinakamura R, (2000) Cloning and expression pattern of a Xenopus pronephros-specific gene, XSMP-30. Mech Dev 92: 273-275.
39. Tran U, Pickney LM, Ozpolat BD, Wessely O, (2007) Xenopus Bicaudal-C is required for the differentiation of the amphibian pronephros. Dev Biol 307: 152-164.
40. Naylor RW, Jones EA, (2009) Notch activates Wnt-4 signalling to control medio-lateral patterning of the pronephros. Development 136: 3585-3595.
41. Saulnier DM, Ghanbari H, Brandli AW, (2002) Essential function of Wnt-4 for tubulogenesis in the Xenopus pronephric kidney. Dev Biol 248: 13-28.
42. Tecza A, Bugner V, Kuhl M, Kuhl SJ, (2011) Pescadillo homologue 1 and Peter Pan function during Xenopus laevis pronephros development. Biol Cell 103: 483-498.
43. Wallingford JB, Carroll TJ, Vize PD, (1998) Precocious expression of the Wilms' tumor gene xWT1 inhibits embryonic kidney development in Xenopus laevis. Dev Biol 202: 103-112.
44. McLaughlin KA, Rones MS, Mercola M, (2000) Notch regulates cell fate in the developing pronephros. Dev Biol 227: 567-580.
45. Taelman V, Van Campenhout C, Solter M, Pieler T, Bellefroid EJ, (2006) The Notch-effector HRT1 gene plays a role in glomerular development and patterning of the Xenopus pronephros anlagen. Development 133: 2961-2971.
46. Rogozin IB, Wolf YI, Sorokin AV, Mirkin BG, Koonin EV, (2003) Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution. Curr Biol 13: 1512-1517.
47. Blackshear PJ, Lai WS, Kennington EA, Brewer G, Wilson GM, et al. (2003) Characteristics of the interaction of a synthetic human tristetraprolin tandem zinc finger peptide with AU-rich element-containing RNA substrates. J Biol Chem 278: 19947-19955.
48. Worthington MT, Pelo JW, Sachedina MA, Applegate JL, Arseneau KO, et al. (2002) RNA binding properties of the AU-rich element-binding recombinant Nup475/TIS11/tristetraprolin protein. J Biol Chem 277: 48558-48564.
49. Schedl A, (2007) Renal abnormalities and their developmental origin. Nat Rev Genet 8: 791-802.
50. Gautier-Courteille C, Le Clainche C, Barreau C, Audic Y, Graindorge A, et al. (2004) EDEN-BP-dependent post-transcriptional regulation of gene expression in Xenopus somitic segmentation. Development 131: 6107-6117.
51. Huot ME, Bisson N, Davidovic L, Mazroui R, Labelle Y, et al. (2005) The RNA-binding protein fragile X-related 1 regulates somite formation in Xenopus laevis. Mol Biol Cell 16: 4350-4361.
52. Dichmann DS, Fletcher RB, Harland RM, (2008) Expression cloning in Xenopus identifies RNA-binding proteins as regulators of embryogenesis and Rbmx as necessary for neural and muscle development. Dev Dyn 237: 1755-1766.
53. Cheng HT, Kopan R, (2005) The role of Notch signaling in specification of podocyte and proximal tubules within the developing mouse kidney. Kidney Int 68: 1951-1952.
54. McCright B, Gao X, Shen L, Lozier J, Lan Y, et al. (2001) Defects in development of the kidney, heart and eye vasculature in mice homozygous for a hypomorphic Notch2 mutation. Development 128: 491-502.
55. Van Campenhout C, Nichane M, Antoniou A, Pendeville H, Bronchain OJ, et al. (2006) Evi1 is specifically expressed in the distal tubule and duct of the Xenopus pronephros and plays a role in its formation. Dev Biol 294: 203-219.
56. Naye F, Tréguer K, Soulet F, Faucheux C, Fédou S, et al. (2007) Differential expression of two TEF-1 (TEAD) genes during Xenopus laevis development and in response to inducing factors. Int J Dev Biol 51: 745-752.
57. Nieuwkoop PD, Faber J (1967) Normal table of Xenopus laevis (Daudin). Amsterdam: Norh Holland publishing company.
58. Sive HL, Grainger RM, Harland RM (2000) Early development of Xenopus laevis: A laboratory manual: Cold Spring Harbor Laboratory Press.
59. Taelman V, Van Wayenbergh R, Solter M, Pichon B, Pieler T, et al. (2004) Sequences downstream of the bHLH domain of the Xenopus hairy-related transcription factor-1 act as an extended dimerization domain that contributes to the selection of the partners. Dev Biol 276: 47-63.
60. Della Gaspera B, Sequeira I, Charbonnier F, Becker C, Shi DL, et al. (2006) Spatio-temporal expression of MRF4 transcripts and protein during Xenopus laevis embryogenesis. Dev Dyn 235: 524-529.
61. Murugan S, Shan J, Kuhl SJ, Tata A, Pietila I, et al. (2012) WT1 and Sox11 regulate synergistically the promoter of the Wnt4 gene that encodes a critical signal for nephrogenesis. Exp Cell Res 318: 1134-1145.
62. Hensey C, Gautier J, (1997) A developmental timer that regulates apoptosis at the onset of gastrulation. Mech Dev 69: 183-195.
63. Saka Y, Smith JC, (2001) Spatial and temporal patterns of cell division during early Xenopus embryogenesis. Dev Biol 229: 307-318.
64. Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.