A comparison and optimization of yeast two-hybrid systems

Methods

Volumn 58, Issue 4, 2012, Pages 317-324

  Caufield, J H ^a   Sakhawalkar, Neha ^a   Uetz, Peter ^a  

^a VIRGINIA COMMONWEALTH UNIVERSITY   (United States)

Author keywords

Interactome; PDEST; PGADCg; PGADT7g; PGBGT7g; PGBKCg; PGBKT7g; Protein interactions; Yeast two hybrid

Indexed keywords

ARTICLE; ASSAY; COMPARATIVE STUDY; FALSE POSITIVE RESULT; GOLD STANDARD; HUMAN; HYBRID; METHODOLOGY; NONHUMAN; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; VECTOR CONTROL; YEAST;

AMITROLE; CLUSTER ANALYSIS; CULTURE MEDIA; GENETIC VECTORS; HUMANS; PLASMIDS; PROTEIN BINDING; PROTEIN INTERACTION DOMAINS AND MOTIFS; PROTEIN INTERACTION MAPPING; RECOMBINANT FUSION PROTEINS; REFERENCE STANDARDS; REPRODUCIBILITY OF RESULTS; SIGNAL-TO-NOISE RATIO; TWO-HYBRID SYSTEM TECHNIQUES; YEASTS;

BACTERIA (MICROORGANISMS); MAMMALIA;

EID: 84872379791     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2012.12.001     Document Type: Article

References (17)

1. Fields S., Song O. Nature 1989, 340:245-246.
2. Kerrien S., Aranda B., Breuza L., Bridge A., Broackes-Carter F., Chen C., Duesbury M., Dumousseau M., Feuermann M., Hinz U., Jandrasits C., Jimenez R.C., Khadake J., Mahadevan U., Masson P., Pedruzzi I., Pfeiffenberger E., Porras P., Raghunath A., Roechert B., Orchard S., Hermjakob H. Nucl. Acids Res. 2012, 40:D841-D846.
3. Scott M.S., Barton G.J. BMC Bioinformatics 2007, 8:239.
4. Braun P., Tasan M., Dreze M., Barrios-Rodiles M., Lemmens I., Yu H., Sahalie J.M., Murray R.R., Roncari L., de Smet A.S., Venkatesan K., Rual J.F., Vandenhaute J., Cusick M.E., Pawson T., Hill D.E., Tavernier J., Wrana J.L., Roth F.P., Vidal M. Nat. Methods 2009, 6:91-97.
5. Chen Y.C., Rajagopala S.V., Stellberger T., Uetz P. Nat. Methods 2010, 7:667-668.
6. Bartel P.L., Chien C.-T., Sternglanz R., Fields S. Cellular Interactions in Development: A Practical Approach 1993, 153-179. Oxford University Press, Oxford. D.A. Hartley (Ed.).
7. Fu H. Protein-Protein Interactions. Methods and Applications 2004, Humana Press, Totowa, NJ.
8. Bouveret E., Brun C. Meth. Mol. Biol. 2012, 804:15.
9. Stellberger T., Häuser R., Baiker A., Pothineni V.R., Haas J., Uetz P. Proteome Sci. 2010, 8:8.
10. Rajagopala S.V., Casjens S., Uetz P. BMC Microbiol. 2011, 11:213.
11. Caraux G., Pinloche S. Bioinformatics 2005, 21:1280-1281.
12. Rajagopala S.V., Hughes K.T., Uetz P. Proteomics 2009, 9:5296-5302.
13. Fromont-Racine M., Mayes A.E., Brunet-Simon A., Rain J.C., Colley A., Dix I., Decourty L., Joly N., Ricard F., Beggs J.D., Legrain P. Yeast 2000, 17:95-110.
14. Vidal M., Brachmann R.L., Fattaey A., Harlow E., Boeke J.D. PNAS 1996, 93:10315-10320.
15. Hu P., Janga S.C., Babu M., Díaz-Mejía J.J., Butland G., Yang W., Pogoutse O., Guo X., Phanse S., Wong P., Chandran S., Christopoulos C., Nazarians-Armavil A., Nasseri N.K., Musso G., Ali M., Nazemof N., Eroukova V., Golshani A., Paccanaro A., Greenblatt J.F., Moreno-Hagelsieb G., Emili A. PLoS Biol. 2009, 7:e96.
16. Arifuzzaman M., Maeda M., Itoh A., Nishikata K., Takita C., Saito R., Ara T., Nakahigashi K., Huang H.C., Hirai A., Tsuzuki K., Nakamura S., Altaf-Ul-Amin M., Oshima T., Baba T., Yamamoto N., Kawamura T., Ioka-Nakamichi T., Kitagawa M., Tomita M., Kanaya S., Wada C., Mori H. Genome Res. 2006, 16:686-691.
17. Häuser R., Stellberger T., Rajagopala S.V., Uetz P. Meth. Mol. Biol. 2012, 812:1-20.