Investigation of genetic risk factors for chronic adult diseases for association with preterm birth

Human Genetics

Volumn 132, Issue 1, 2013, Pages 57-67

  Falah, Nadia ^a   McElroy, Jude ^a   Snegovskikh, Victoria ^b   Lockwood, Charles J ^b   Norwitz, Errol ^b   Murray, Jeffey C ^c   Kuczynski, Edward ^d   Menon, Ramkumar ^e   Teramo, Kari ^f   Muglia, Louis J ^a   Morgan, Thomas ^a  

^a VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c UNIVERSITY OF IOWA   (United States)

^d UNIVERSITY OF HOUSTON   (United States)

^e University of Texas Medical Branch School of Medicine   (United States)

^f HELSINKI UNIVERSITY CENTRAL HOSPITAL   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

HLA DQA1 ANTIGEN;

ARTICLE; CARDIOVASCULAR IMMUNE AND METABOLIC DISORDER; CHORIOAMNIONITIS; CONTROLLED STUDY; DISEASE ASSOCIATION; FEMALE; FETUS WASTAGE; GENETIC RISK; GENOTYPE; HUMAN; INSULIN DEPENDENT DIABETES MELLITUS; MAJOR CLINICAL STUDY; METABOLIC DISORDER; PREMATURE LABOR; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM;

ADULT; CARDIOVASCULAR DISEASES; CASE-CONTROL STUDIES; CHRONIC DISEASE; COHORT STUDIES; FEMALE; GENE FREQUENCY; GENETIC ASSOCIATION STUDIES; GENETIC PREDISPOSITION TO DISEASE; HUMANS; IMMUNE SYSTEM DISEASES; INFANT, NEWBORN; METABOLIC DISEASES; POLYMORPHISM, SINGLE NUCLEOTIDE; PREGNANCY; PREMATURE BIRTH; RISK FACTORS;

EID: 84872325292     PISSN: 03406717     EISSN: 14321203     Source Type: Journal    
DOI: 10.1007/s00439-012-1223-x     Document Type: Article

References (28)

1. Chaudhari BP, Plunkett J, Ratajczak CK, Shen TT, DeFranco EA, Muglia LJ (2008) The genetics of birth timing: insights into a fundamental component of human development. Clin Genet 74(6):493-501. doi: 10.1111/j.1399-0004.2008. 01124.x
2. de Boo HA, Harding JE (2006) The developmental origins of adult disease (Barker) hypothesis. Aust N Z J Obstet Gynaecol 46(1):4-14. doi: 10.1111/j.1479-828X.2006.00506.x
3. ®·DNA self collection kit (2008). http://www.dnagenotek. com/pdf-files/568446855.pdf. Accessed 2 Feb 2012
4. Ehn NL, Cooper ME, Orr K, Shi M, Johnson MK, Caprau D, Dagle J, Steffen K, Johnson K, Marazita ML, Merrill D, Murray JC (2007) Evaluation of fetal and maternal genetic variation in the progesterone receptor gene for contributions to preterm birth. Pediatr Res 62(5):630-635. doi: 10.1203/PDR.0b013e3181567bfc
5. Genome-Wide Association Studies of Prematurity and Its Complications (2010). http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study-id= phs000103.v1.p1. Accessed 14 Dec 2011
6. He H, Zhang X, Ding L, Baye TM, Kurowski BG, Martin LJ (2011) Effect of population stratification analysis on false-positive rates for common and rare variants. BMC Proc 5(Suppl 9):S116. doi: 10.1186/1753-6561-5-S9-S116
7. Huang J, Johnson AD, O'Donnell CJ (2011) PRIMe: a method for characterization and evaluation of pleiotropic regions from multiple genome-wide association studies. Bioinformatics 27(9):1201-1206. doi: 10.1093/ bioinformatics/btr116
8. Johnson AD, Handsaker RE, Pulit SL, Nizzari MM, O'Donnell CJ, de Bakker PI (2008) SNAP: a web-based tool for identification and annotation of proxy SNPs using HapMap. Bioinformatics 24(24):2938-2939. doi: 10.1093/bioinformatics/ btn564
9. Kochanek KD, Kirmeyer SE, Martin JA, Strobino DM, Guyer B (2012) Annual summary of vital statistics: 2009. Pediatrics 129(2):338-348. doi: 10.1542/peds.2011-3435
10. Kraft P (2008) Curses - winner's and otherwise - in genetic epidemiology. Epidemiology 19(5):649-651. doi: 10.1097/EDE.0b013e318181b865 (discussion 657-648)
11. Landry JS, Chan T, Lands L, Menzies D (2011) Long-term impact of bronchopulmonary dysplasia on pulmonary function. Can Respir J J Can Thorac Soc 18(5):265-270
12. Lee J, Romero R, Xu Y, Kim JS, Topping V, Yoo W, Kusanovic JP, Chaiworapongsa T, Hassan SS, Yoon BH, Kim CJ (2011) A signature of maternal anti-fetal rejection in spontaneous preterm birth: chronic chorioamnionitis, anti-human leukocyte antigen antibodies, and C4d. PLoS One 6(2):e16806. doi: 10.1371/journal.pone.0016806
13. Lesack K, Naugler C (2011) An open-source software program for performing Bonferroni and related corrections for multiple comparisons. J Pathol Inform 2:52. doi: 10.4103/2153-3539.91130
14. Li X, Howard TD, Zheng SL, Haselkorn T, Peters SP, Meyers DA, Bleecker ER (2010) Genome-wide association study of asthma identifies RAD50-IL13 and HLA-DR/DQ regions. J Allergy Clin Immunol 125(2):328-335 e311. doi: 10.1016/j.jaci.2009.11.018
15. Lusis AJ (2000) Atherosclerosis. Nature 407(6801):233-241. doi: 10.1038/35025203
16. Manolio TA, Collins FS, Cox NJ, Goldstein DB, Hindorff LA, Hunter DJ, McCarthy MI, Ramos EM, Cardon LR, Chakravarti A, Cho JH, Guttmacher AE, Kong A, Kruglyak L, Mardis E, Rotimi CN, Slatkin M, Valle D, Whittemore AS, Boehnke M, Clark AG, Eichler EE, Gibson G, Haines JL, Mackay TF, McCarroll SA, Visscher PM (2009) Finding the missing heritability of complex diseases. Nature 461(7265):747-753. doi: 10.1038/nature08494
17. Mathews TJ, MacDorman MF (2011) Infant mortality statistics from the 2007 period linked birth/infant death data set. Natl Vital Stat Rep 59 (6):1-30: from the Centers for Disease Control and Prevention, National Center for Health Statistics, National Vital Statistics System
18. Menon R, Fortunato SJ, Edwards DR, Williams SM (2010) Association of genetic variants, ethnicity and preterm birth with amniotic fluid cytokine concentrations. Ann Hum Genet 74(2):165-183
19. Menon R, Torloni MR, Voltolini C, Torricelli M, Merialdi M, Betran AP, Widmer M, Allen T, Davydova I, Khodjaeva Z, Thorsen P, Kacerovsky M, Tambor V, Massinen T, Nace J, Arora C (2011) Biomarkers of spontaneous preterm birth: an overview of the literature in the last four decades. Reprod Sci 18(11):1046-1070. doi: 10.1177/1933719111415548
20. Park JS, Park CW, Lockwood CJ, Norwitz ER (2005) Role of cytokines in preterm labor and birth. Minerva Ginecol 57(4):349-366
21. Plunkett J, Feitosa MF, Trusgnich M, Wangler MF, Palomar L, Kistka ZA, DeFranco EA, Shen TT, Stormo AE, Puttonen H, Hallman M, Haataja R, Luukkonen A, Fellman V, Peltonen L, Palotie A, Daw EW, An P, Teramo K, Borecki I, Muglia LJ (2009) Mother's genome or maternally-inherited genes acting in the fetus influence gestational age in familial preterm birth. Hum Hered 68(3):209-219. doi: 10.1159/000224641
22. Plunkett J, Doniger S, Orabona G, Morgan T, Haataja R, Hallman M, Puttonen H, Menon R, Kuczynski E, Norwitz E, Snegovskikh V, Palotie A, Peltonen L, Fellman V, DeFranco EA, Chaudhari BP, McGregor TL, McElroy JJ, Oetjens MT, Teramo K, Borecki I, Fay J, Muglia L (2011) An evolutionary genomic approach to identify genes involved in human birth timing. PLoS Genet 7(4):e1001365. doi: 10.1371/journal.pgen.1001365
23. Power and sample size calculation: a review and computer program (1998). http://biostat.mc.vanderbilt.edu/wiki/Main/PowerSampleSize. Accessed 27 Aug 2012
24. Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, Bender D, Maller J, Sklar P, de Bakker PI, Daly MJ, Sham PC (2007) PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 81(3):559-575. doi: 10.1086/519795
25. Schillert A, Ziegler A (2012) Genotype calling for the Affymetrix platform. Methods Mol Biol 850:513-523. doi: 10.1007/978-1-61779-555-8-28
26. Sharma PK, Sankar MJ, Sapra S, Saxena R, Karthikeyan CV, Deorari A, Agarwal R, Paul V (2011) Growth and neurosensory outcomes of preterm very low birth weight infants at 18 months of corrected age. Indian J Pediatr. doi: 10.1007/s12098-011-0442-9
27. Snegovskikh VV, Bhandari V, Wright JR, Tadesse S, Morgan T, Macneill C, Foyouzi N, Park JS, Wang Y, Norwitz ER (2011) Surfactant protein-A (SP-A) selectively inhibits prostaglandin F2alpha (PGF2alpha) production in term decidua: implications for the onset of labor. J Clin Endocrinol Metab 96(4):E624-E632. doi: 10.1210/jc.2010-1496
28. Uzun A, Laliberte A, Parker J, Andrew C, Winterrowd E, Sharma S, Istrail S, Padbury JF (2012) dbPTB: a database for preterm birth. Database J Biol Databases Curation. doi: 10.1093/database/bar069